Wall clock time and date at job start Mon Mar 30 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46489 * 126.49837 * 2 1 4 4 C 1.39628 * 134.03314 * 359.95307 * 3 2 1 5 5 C 1.36627 * 119.76439 * 180.02562 * 4 3 2 6 6 C 1.38833 * 120.52716 * 0.03844 * 5 4 3 7 7 C 1.37741 * 120.66701 * 359.97438 * 6 5 4 8 8 C 1.39125 * 119.78217 * 359.97438 * 7 6 5 9 9 N 1.37684 * 133.51123 * 179.97438 * 8 7 6 10 10 H 0.97001 * 125.06189 * 0.02898 * 9 8 7 11 11 C 1.34237 * 126.50243 * 180.02562 * 2 1 3 12 12 C 1.50698 * 125.03312 * 0.26119 * 11 2 1 13 13 H 1.08994 * 109.47271 * 39.72470 * 12 11 2 14 14 N 1.46907 * 109.46798 * 159.72317 * 12 11 2 15 15 C 1.50699 * 109.47318 * 279.72045 * 12 11 2 16 16 H 1.08003 * 120.00135 * 0.02562 * 15 12 11 17 17 C 1.37870 * 119.99903 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00316 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99960 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47533 * 89.99991 * 19 17 15 21 21 H 1.48510 * 109.47079 * 210.00043 * 19 17 15 22 22 H 1.48500 * 109.47073 * 329.99687 * 19 17 15 23 23 H 1.08997 * 109.47303 * 269.99919 * 1 2 3 24 24 H 1.09001 * 109.47223 * 30.00381 * 1 2 3 25 25 H 1.09005 * 109.46965 * 150.00050 * 1 2 3 26 26 H 1.07997 * 120.11619 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.73448 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.66559 * 180.02562 * 6 5 4 29 29 H 1.08000 * 120.10962 * 179.97438 * 7 6 5 30 30 H 1.00896 * 111.00100 * 296.04737 * 14 12 11 31 31 H 1.00902 * 110.99823 * 59.99826 * 14 12 11 32 32 H 0.97004 * 120.00219 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1486 2.5548 -0.0008 5 6 3.2069 3.4190 -0.0011 6 6 4.5095 2.9387 -0.0013 7 6 4.7588 1.5840 -0.0008 8 6 3.6963 0.6858 0.0005 9 7 3.6170 -0.6887 0.0009 10 1 4.3776 -1.2907 0.0006 11 6 2.3055 -1.0790 -0.0005 12 6 1.8282 -2.5084 -0.0067 13 1 0.9659 -2.6007 -0.6669 14 7 2.9073 -3.3828 -0.4856 15 6 1.4365 -2.9134 1.3909 16 1 1.5239 -2.2063 2.2026 17 6 0.9654 -4.1863 1.6334 18 7 0.8585 -5.0472 0.6450 19 14 0.4791 -4.6880 3.3658 20 1 -0.9576 -4.3828 3.5847 21 1 0.7081 -6.1447 3.5419 22 1 1.3003 -3.9356 4.3479 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.1380 2.9357 -0.0013 27 1 3.0287 4.4841 -0.0013 28 1 5.3357 3.6343 -0.0011 29 1 5.7757 1.2203 -0.0014 30 1 3.1440 -3.1736 -1.4438 31 1 3.7188 -3.3152 0.1103 32 1 0.5267 -5.9427 0.8155 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211776200.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:20 Heat of formation + Delta-G solvation = 29.799673 kcal Electronic energy + Delta-G solvation = -15533.523215 eV Core-core repulsion = 13071.984655 eV Total energy + Delta-G solvation = -2461.538560 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.16778 -38.19094 -35.90042 -33.87638 -33.41343 -30.91030 -29.82926 -28.27933 -27.09828 -24.58766 -22.96760 -21.74407 -19.98543 -18.59325 -18.51721 -17.15524 -16.59193 -16.24972 -15.80500 -15.39043 -15.06293 -14.67044 -14.36089 -14.07644 -13.69512 -13.48818 -13.19369 -12.94197 -12.75603 -12.70187 -12.38494 -12.26217 -11.92400 -11.59648 -11.31596 -10.59164 -10.33309 -9.14427 -8.94965 -8.38296 -7.99861 -6.23813 0.31718 0.80119 1.41679 1.43238 1.51866 1.88360 2.29406 2.46894 3.07410 3.21692 3.89501 4.05209 4.23714 4.26435 4.37347 4.50615 4.56581 4.72781 4.87923 4.97613 5.01987 5.10957 5.26518 5.29324 5.36710 5.66891 5.71736 5.78018 5.91823 6.02423 6.12434 6.35654 6.59848 6.76818 6.97977 7.11154 7.48622 9.00601 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.007144 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.146505 B = 3918.594047 C = 4102.874846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.213 4.213 3 C -0.126 4.126 4 C -0.090 4.090 5 C -0.150 4.150 6 C -0.106 4.106 7 C -0.139 4.139 8 C 0.069 3.931 9 N -0.589 5.589 10 H 0.414 0.586 11 C 0.073 3.927 12 C 0.289 3.711 13 H 0.031 0.969 14 N -0.820 5.820 15 C -0.538 4.538 16 H 0.041 0.959 17 C 0.041 3.959 18 N -0.876 5.876 19 Si 0.947 3.053 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.276 1.276 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.129 0.871 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.314 0.686 31 H 0.322 0.678 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 13.312 -1.762 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.220 4.220 3 C -0.131 4.131 4 C -0.108 4.108 5 C -0.169 4.169 6 C -0.125 4.125 7 C -0.160 4.160 8 C -0.038 4.038 9 N -0.193 5.193 10 H 0.252 0.748 11 C -0.038 4.038 12 C 0.178 3.822 13 H 0.049 0.951 14 N -0.347 5.347 15 C -0.577 4.577 16 H 0.059 0.941 17 C -0.163 4.163 18 N -0.511 5.511 19 Si 0.773 3.227 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.201 1.201 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.147 0.853 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.185 12.387 -1.699 13.536 hybrid contribution 0.512 -0.192 0.753 0.931 sum 5.697 12.195 -0.946 13.494 Atomic orbital electron populations 1.19905 0.89335 1.01329 1.01023 1.20309 0.96005 0.90594 1.15075 1.19494 0.92351 0.94123 1.07108 1.20497 1.00338 0.90272 0.99710 1.20937 0.92119 1.00397 1.03444 1.21144 0.97834 0.93903 0.99621 1.20335 0.96565 0.92632 1.06439 1.18688 0.96346 0.83470 1.05282 1.41628 1.07004 1.05057 1.65627 0.74824 1.22030 0.82954 0.99028 0.99793 1.17595 0.90258 0.78786 0.95581 0.95094 1.58867 1.11470 1.60311 1.04097 1.20938 1.45928 0.97786 0.93055 0.94110 1.25581 0.94556 0.96432 0.99736 1.70197 1.43570 1.05172 1.32202 0.85770 0.78649 0.77243 0.81087 1.20032 1.20793 1.20123 0.92887 0.91003 0.93232 0.85326 0.83333 0.82724 0.84653 0.87392 0.86538 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.23 10.17 71.24 0.72 -1.50 16 2 C -0.21 -8.91 6.31 -18.63 -0.12 -9.03 16 3 C -0.13 -4.70 6.35 -20.20 -0.13 -4.82 16 4 C -0.09 -2.71 10.05 22.23 0.22 -2.48 16 5 C -0.15 -3.64 9.97 22.04 0.22 -3.42 16 6 C -0.11 -2.47 10.01 22.29 0.22 -2.25 16 7 C -0.14 -3.85 10.08 22.37 0.23 -3.63 16 8 C 0.07 2.44 7.28 39.03 0.28 2.72 16 9 N -0.59 -21.88 5.89 -175.91 -1.04 -22.91 16 10 H 0.41 13.39 7.97 -92.71 -0.74 12.65 16 11 C 0.07 3.16 5.99 40.86 0.24 3.41 16 12 C 0.29 14.19 2.70 43.42 0.12 14.31 16 13 H 0.03 1.72 7.39 -2.39 -0.02 1.70 16 14 N -0.82 -37.03 8.32 -174.95 -1.46 -38.48 16 15 C -0.54 -29.35 8.71 25.60 0.22 -29.13 16 16 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 17 C 0.04 2.26 5.39 84.65 0.46 2.72 16 18 N -0.88 -50.15 12.77 21.44 0.27 -49.88 16 19 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.05 1.99 7.27 -2.38 -0.02 1.97 16 26 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 27 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.31 12.63 9.06 -89.70 -0.81 11.82 16 31 H 0.32 13.57 8.10 -89.69 -0.73 12.84 16 32 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -63.58 275.22 1.39 -62.19 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -1.12 Total: 36.56 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 2.70 Total: -33.09 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -2.22 Total: -111.27 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.58 1.39 -62.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211776200.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.994 kcal (2) G-P(sol) polarization free energy of solvation -63.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds