Wall clock time and date at job start Mon Mar 30 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47289 * 2 1 4 4 C 1.38005 * 120.12121 * 93.22211 * 3 2 1 5 5 C 1.38996 * 120.57463 * 180.02562 * 4 3 2 6 6 C 1.36391 * 120.76018 * 359.95477 * 5 4 3 7 7 C 1.40493 * 119.84882 * 0.02562 * 6 5 4 8 8 N 1.33975 * 133.19904 * 180.02562 * 7 6 5 9 9 C 1.32464 * 109.78426 * 179.97438 * 8 7 6 10 10 C 1.40185 * 125.30178 * 180.26769 * 9 8 7 11 11 H 1.07996 * 120.00271 * 179.69554 * 10 9 8 12 12 C 1.40356 * 119.99835 * 359.69441 * 10 9 8 13 13 N 1.30583 * 119.99874 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99814 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47201 * 90.00110 * 14 12 10 16 16 H 1.48498 * 109.46764 * 210.00042 * 14 12 10 17 17 H 1.48500 * 109.47172 * 329.99870 * 14 12 10 18 18 N 1.37856 * 109.39655 * 0.02562 * 9 8 7 19 19 C 1.46501 * 126.53551 * 179.97438 * 18 9 8 20 20 C 1.37967 * 106.92688 * 0.02562 * 18 9 8 21 21 H 1.08995 * 109.46780 * 299.99879 * 1 2 3 22 22 H 1.09006 * 109.47027 * 59.99952 * 1 2 3 23 23 H 1.08996 * 109.47014 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47323 * 240.00486 * 2 1 3 25 25 H 1.08999 * 109.47322 * 119.99813 * 2 1 3 26 26 H 1.08001 * 119.71013 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.61570 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.06947 * 179.97438 * 6 5 4 29 29 H 0.97004 * 119.99860 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.47373 * 95.51346 * 19 18 9 31 31 H 1.09003 * 109.47220 * 215.51800 * 19 18 9 32 32 H 1.09002 * 109.47252 * 335.51687 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3265 2.0514 1.1918 5 6 2.7900 3.3618 1.2028 6 6 2.9641 4.0499 0.0382 7 6 2.6727 3.4319 -1.1894 8 7 2.7430 3.8429 -2.4626 9 6 2.3510 2.8691 -3.2705 10 6 2.3019 2.9473 -4.6693 11 1 1.9717 2.0963 -5.2465 12 6 2.6817 4.1317 -5.3196 13 7 3.0813 5.1605 -4.6217 14 14 2.6155 4.2362 -7.1836 15 1 1.2787 4.7269 -7.6047 16 1 3.6613 5.1746 -7.6641 17 1 2.8539 2.8901 -7.7636 18 7 2.0042 1.7648 -2.5217 19 6 1.5192 0.4809 -3.0341 20 6 2.1997 2.0998 -1.1976 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.1947 1.5223 2.1241 27 1 3.0150 3.8404 2.1445 28 1 3.3244 5.0678 0.0598 29 1 3.3435 5.9792 -5.0712 30 1 2.3550 -0.2128 -3.1257 31 1 0.7802 0.0707 -2.3458 32 1 1.0616 0.6295 -4.0122 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213230275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:21 Heat of formation + Delta-G solvation = 53.988310 kcal Electronic energy + Delta-G solvation = -15793.178961 eV Core-core repulsion = 13332.689299 eV Total energy + Delta-G solvation = -2460.489662 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41772 -36.46813 -34.18949 -33.52059 -31.49282 -28.91783 -28.46250 -25.89846 -25.56945 -22.96245 -21.06182 -20.57603 -18.82390 -16.94442 -16.09149 -15.62403 -14.78656 -14.59030 -14.32524 -13.81946 -13.42733 -12.82835 -12.61779 -12.37943 -12.08018 -11.77842 -11.53932 -11.40760 -11.33555 -10.99669 -10.70728 -10.42306 -10.33779 -10.28828 -10.09707 -9.33468 -8.84856 -7.88605 -7.19925 -6.75659 -6.66566 -4.61477 2.23490 2.73965 2.99482 3.02243 3.05766 3.80165 4.13199 4.14884 4.92867 5.33689 5.39613 5.50411 5.60211 5.75560 5.81295 5.92783 5.93288 6.04216 6.06666 6.14822 6.21194 6.39068 6.54293 6.62838 6.80420 6.89729 7.00894 7.32215 7.49164 7.63718 7.75989 7.93007 8.00748 8.34200 8.64893 9.04000 9.96858 10.22747 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034278 B = 0.008576 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.648306 B = 3264.141972 C = 3981.294796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.070 4.070 4 C -0.179 4.179 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.109 3.891 8 N -0.536 5.536 9 C 0.418 3.582 10 C -0.442 4.442 11 H 0.087 0.913 12 C 0.077 3.923 13 N -0.716 5.716 14 Si 0.918 3.082 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.262 1.262 18 N -0.541 5.541 19 C 0.095 3.905 20 C 0.002 3.998 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.279 0.721 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -6.729 2.723 7.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.074 4.074 4 C -0.200 4.200 5 C -0.143 4.143 6 C -0.153 4.153 7 C -0.019 4.019 8 N -0.259 5.259 9 C 0.181 3.819 10 C -0.480 4.480 11 H 0.105 0.895 12 C -0.151 4.151 13 N -0.338 5.338 14 Si 0.742 3.258 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.185 1.185 18 N -0.237 5.237 19 C -0.049 4.049 20 C -0.106 4.106 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.566 -5.832 2.376 6.800 hybrid contribution -0.283 -0.767 -0.565 0.994 sum -2.850 -6.599 1.811 7.412 Atomic orbital electron populations 1.21787 0.95671 1.00533 1.02148 1.20495 0.95494 0.94299 1.01584 1.18449 1.03563 0.94728 0.90613 1.20166 1.08836 0.95794 0.95220 1.20184 1.02714 0.94791 0.96574 1.19754 1.06334 0.99434 0.89798 1.19568 0.97798 0.90457 0.94079 1.71389 1.31329 1.26371 0.96841 1.20462 0.89425 0.78930 0.93065 1.18488 1.42024 1.00081 0.87370 0.89531 1.25866 0.93596 0.94776 1.00814 1.69978 1.24799 1.01769 1.37299 0.86157 0.78930 0.79369 0.81366 1.19284 1.19892 1.18550 1.45354 1.60835 1.13173 1.04313 1.21654 0.98696 0.84485 1.00017 1.18682 1.09355 0.97773 0.84767 0.92599 0.92783 0.93251 0.92011 0.91911 0.87933 0.87841 0.87484 0.90979 0.93398 0.91440 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.31 37.16 0.35 -1.75 16 2 C -0.08 -1.33 5.38 -27.88 -0.15 -1.48 16 3 C -0.07 -1.44 5.14 -104.54 -0.54 -1.98 16 4 C -0.18 -3.49 9.68 -39.39 -0.38 -3.87 16 5 C -0.12 -2.45 9.96 -39.97 -0.40 -2.85 16 6 C -0.13 -3.09 10.07 -39.40 -0.40 -3.49 16 7 C 0.11 2.90 7.21 -84.89 -0.61 2.29 16 8 N -0.54 -15.69 9.33 -10.31 -0.10 -15.79 16 9 C 0.42 11.47 7.41 -155.68 -1.15 10.31 16 10 C -0.44 -11.45 8.99 -38.05 -0.34 -11.79 16 11 H 0.09 2.02 6.97 -52.49 -0.37 1.65 16 12 C 0.08 1.92 5.50 -17.29 -0.10 1.82 16 13 N -0.72 -19.23 11.85 55.57 0.66 -18.57 16 14 Si 0.92 18.03 29.56 -169.99 -5.03 13.01 16 15 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 16 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 N -0.54 -12.95 3.26 -120.85 -0.39 -13.34 16 19 C 0.10 1.74 9.56 59.85 0.57 2.32 16 20 C 0.00 0.05 6.78 -83.75 -0.57 -0.52 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.86 6.84 -51.93 -0.36 0.51 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.00 5.98 -51.93 -0.31 0.69 16 25 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 29 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 30 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 31 H 0.07 1.09 4.57 -51.93 -0.24 0.85 16 32 H 0.07 1.30 7.10 -51.93 -0.37 0.93 16 LS Contribution 266.72 15.07 4.02 4.02 Total: -1.00 -30.62 266.72 -8.28 -38.90 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -3.73 Total: 2.74 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.72 Total: -10.97 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.17 Total: -47.70 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.62 -8.28 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213230275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.892 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds