Wall clock time and date at job start Mon Mar 30 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47149 * 2 1 4 4 C 1.36392 * 120.07153 * 264.97183 * 3 2 1 5 5 C 1.38999 * 120.76260 * 180.02562 * 4 3 2 6 6 C 1.38011 * 120.56752 * 359.96980 * 5 4 3 7 7 C 1.38677 * 119.76731 * 0.02562 * 6 5 4 8 8 C 1.40497 * 120.07830 * 84.99256 * 3 2 1 9 9 N 1.33970 * 133.20252 * 359.94346 * 8 3 2 10 10 C 1.32465 * 109.78596 * 180.02562 * 9 8 3 11 11 C 1.40189 * 125.30184 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99720 * 180.02562 * 11 10 9 13 13 C 1.40347 * 119.99677 * 0.30650 * 11 10 9 14 14 N 1.30584 * 120.00218 * 359.71965 * 13 11 10 15 15 Si 1.86801 * 119.99687 * 179.72162 * 13 11 10 16 16 H 1.48504 * 109.47306 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47021 * 119.99642 * 15 13 11 18 18 H 1.48501 * 109.47039 * 240.00059 * 15 13 11 19 19 N 1.37852 * 109.39561 * 0.26639 * 10 9 8 20 20 C 1.46498 * 126.53624 * 179.73850 * 19 10 9 21 21 H 1.08991 * 109.47310 * 300.00294 * 1 2 3 22 22 H 1.08999 * 109.47173 * 60.00495 * 1 2 3 23 23 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47042 * 239.99459 * 2 1 3 25 25 H 1.09007 * 109.46885 * 119.99500 * 2 1 3 26 26 H 1.08002 * 119.62555 * 0.03006 * 4 3 2 27 27 H 1.07998 * 119.71802 * 179.97438 * 5 4 3 28 28 H 1.07999 * 120.11109 * 180.02562 * 6 5 4 29 29 H 0.97004 * 119.99597 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47674 * 90.02282 * 20 19 10 31 31 H 1.09000 * 109.46966 * 210.02588 * 20 19 10 32 32 H 1.09006 * 109.47301 * 330.01822 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3577 2.0306 -1.1758 5 6 2.8229 3.3404 -1.1924 6 6 2.9641 4.0501 -0.0172 7 6 2.6398 3.4522 1.1913 8 6 2.1670 2.1200 1.2111 9 7 1.9321 1.7943 2.4892 10 6 2.2221 2.8211 3.2742 11 6 2.0957 2.8346 4.6704 12 1 2.3572 3.7220 5.2277 13 6 1.6347 1.6930 5.3442 14 7 1.3185 0.6202 4.6703 15 14 1.4736 1.7084 7.2052 16 1 1.8927 3.0339 7.7274 17 1 0.0602 1.4519 7.5818 18 1 2.3404 0.6516 7.7858 19 7 2.6615 3.8765 2.5039 20 6 3.0755 5.1961 2.9872 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 2.2527 1.4898 -2.1047 27 1 3.0760 3.8067 -2.1331 28 1 3.3258 5.0674 -0.0388 29 1 0.9995 -0.1687 5.1361 30 1 4.1451 5.1871 3.1971 31 1 2.8610 5.9457 2.2255 32 1 2.5284 5.4374 3.8986 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213230353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:19 Heat of formation + Delta-G solvation = 51.357736 kcal Electronic energy + Delta-G solvation = -15738.103017 eV Core-core repulsion = 13277.499284 eV Total energy + Delta-G solvation = -2460.603732 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34795 -36.52393 -33.77167 -33.03492 -32.07031 -28.93814 -28.01502 -25.88195 -25.67665 -22.67217 -20.94571 -20.63114 -18.66624 -16.95014 -16.15520 -15.52040 -14.80854 -14.40986 -14.20794 -13.51404 -13.34036 -12.68035 -12.43139 -12.39761 -12.05954 -11.71853 -11.53162 -11.34882 -11.10478 -10.94206 -10.64735 -10.35798 -10.30223 -10.04036 -9.97208 -9.31499 -8.83466 -7.87990 -7.21460 -6.73935 -6.67053 -4.60392 2.24775 2.72634 2.98678 3.02303 3.06447 3.79974 4.14348 4.15700 4.94253 5.48436 5.58756 5.61129 5.77235 5.92944 5.95422 6.01249 6.07498 6.19669 6.27730 6.38433 6.56440 6.59194 6.72480 6.81838 6.99540 7.02881 7.05818 7.32481 7.50241 7.64777 7.77176 7.93879 8.01147 8.34660 8.64912 9.03981 9.96539 10.22121 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.009696 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.818854 B = 2887.117650 C = 3826.147775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.093 4.093 4 C -0.124 4.124 5 C -0.179 4.179 6 C -0.107 4.107 7 C -0.007 4.007 8 C 0.115 3.885 9 N -0.529 5.529 10 C 0.416 3.584 11 C -0.441 4.441 12 H 0.086 0.914 13 C 0.077 3.923 14 N -0.715 5.715 15 Si 0.917 3.083 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.545 5.545 20 C 0.104 3.896 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.278 0.722 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 2.912 -2.630 3.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C -0.096 4.096 4 C -0.144 4.144 5 C -0.199 4.199 6 C -0.129 4.129 7 C -0.114 4.114 8 C -0.013 4.013 9 N -0.252 5.252 10 C 0.179 3.821 11 C -0.479 4.479 12 H 0.105 0.895 13 C -0.150 4.150 14 N -0.337 5.337 15 Si 0.741 3.259 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.241 5.241 20 C -0.040 4.040 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.354 2.041 -2.264 3.069 hybrid contribution 0.331 1.029 0.542 1.209 sum 0.685 3.070 -1.722 3.586 Atomic orbital electron populations 1.21637 0.95974 1.00114 1.01644 1.20191 0.95347 0.93407 1.01131 1.18584 1.04813 0.95833 0.90337 1.20097 1.03105 0.95143 0.96097 1.20259 1.08397 0.95428 0.95858 1.19572 1.04847 0.98329 0.90177 1.18891 1.09521 0.97655 0.85379 1.19335 0.97848 0.90388 0.93762 1.71356 1.31636 1.25018 0.97202 1.20491 0.88999 0.79722 0.92850 1.18520 1.41539 1.00227 0.87601 0.89545 1.25845 0.93791 0.94584 1.00773 1.69983 1.25027 1.01498 1.37172 0.86122 0.78811 0.79521 0.81480 1.18471 1.19665 1.19667 1.45428 1.61055 1.12848 1.04803 1.21415 0.99461 0.83223 0.99861 0.92043 0.93908 0.93836 0.93183 0.90947 0.87898 0.87877 0.88741 0.91073 0.93265 0.92228 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.90 37.16 0.37 -2.21 16 2 C -0.06 -1.29 6.07 -27.88 -0.17 -1.46 16 3 C -0.09 -2.11 5.15 -104.44 -0.54 -2.65 16 4 C -0.12 -2.50 9.58 -39.97 -0.38 -2.88 16 5 C -0.18 -3.50 10.04 -39.38 -0.40 -3.90 16 6 C -0.11 -2.27 10.04 -39.50 -0.40 -2.67 16 7 C -0.01 -0.17 6.88 -83.75 -0.58 -0.74 16 8 C 0.11 3.00 6.91 -84.89 -0.59 2.41 16 9 N -0.53 -15.05 9.33 -10.31 -0.10 -15.14 16 10 C 0.42 11.31 7.41 -155.68 -1.15 10.16 16 11 C -0.44 -11.33 8.99 -38.06 -0.34 -11.68 16 12 H 0.09 2.02 7.10 -52.49 -0.37 1.64 16 13 C 0.08 1.91 5.50 -17.29 -0.10 1.81 16 14 N -0.71 -18.81 11.85 55.57 0.66 -18.15 16 15 Si 0.92 17.92 29.56 -169.99 -5.03 12.89 16 16 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 N -0.54 -13.15 3.26 -120.85 -0.39 -13.54 16 20 C 0.10 1.91 10.93 59.85 0.65 2.57 16 21 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 22 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.87 8.04 -51.93 -0.42 0.46 16 25 H 0.07 1.63 8.12 -51.92 -0.42 1.21 16 26 H 0.10 1.77 8.05 -52.49 -0.42 1.35 16 27 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.29 7.32 -51.93 -0.38 0.91 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -29.98 276.47 -8.41 -38.39 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.11 Total: 2.63 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.61 Total: -11.24 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.17 Total: -46.84 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.98 -8.41 -38.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213230353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.749 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds