Wall clock time and date at job start Mon Mar 30 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47149 * 2 1 4 4 C 1.36392 * 120.07153 * 264.97183 * 3 2 1 5 5 C 1.38999 * 120.76260 * 180.02562 * 4 3 2 6 6 C 1.38011 * 120.56752 * 359.96980 * 5 4 3 7 7 C 1.38677 * 119.76731 * 0.02562 * 6 5 4 8 8 C 1.40497 * 120.07830 * 84.99256 * 3 2 1 9 9 N 1.33970 * 133.20252 * 359.94346 * 8 3 2 10 10 C 1.32465 * 109.78596 * 180.02562 * 9 8 3 11 11 C 1.40189 * 125.30184 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99720 * 180.02562 * 11 10 9 13 13 C 1.40347 * 119.99677 * 0.30650 * 11 10 9 14 14 N 1.30584 * 120.00218 * 359.71965 * 13 11 10 15 15 Si 1.86801 * 119.99687 * 179.72162 * 13 11 10 16 16 H 1.48504 * 109.47306 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47021 * 119.99642 * 15 13 11 18 18 H 1.48501 * 109.47039 * 240.00059 * 15 13 11 19 19 N 1.37852 * 109.39561 * 0.26639 * 10 9 8 20 20 C 1.46498 * 126.53624 * 179.73850 * 19 10 9 21 21 H 1.08991 * 109.47310 * 300.00294 * 1 2 3 22 22 H 1.08999 * 109.47173 * 60.00495 * 1 2 3 23 23 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47042 * 239.99459 * 2 1 3 25 25 H 1.09007 * 109.46885 * 119.99500 * 2 1 3 26 26 H 1.08002 * 119.62555 * 0.03006 * 4 3 2 27 27 H 1.07998 * 119.71802 * 179.97438 * 5 4 3 28 28 H 1.07999 * 120.11109 * 180.02562 * 6 5 4 29 29 H 0.97004 * 119.99597 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47674 * 90.02282 * 20 19 10 31 31 H 1.09000 * 109.46966 * 210.02588 * 20 19 10 32 32 H 1.09006 * 109.47301 * 330.01822 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3577 2.0306 -1.1758 5 6 2.8229 3.3404 -1.1924 6 6 2.9641 4.0501 -0.0172 7 6 2.6398 3.4522 1.1913 8 6 2.1670 2.1200 1.2111 9 7 1.9321 1.7943 2.4892 10 6 2.2221 2.8211 3.2742 11 6 2.0957 2.8346 4.6704 12 1 2.3572 3.7220 5.2277 13 6 1.6347 1.6930 5.3442 14 7 1.3185 0.6202 4.6703 15 14 1.4736 1.7084 7.2052 16 1 1.8927 3.0339 7.7274 17 1 0.0602 1.4519 7.5818 18 1 2.3404 0.6516 7.7858 19 7 2.6615 3.8765 2.5039 20 6 3.0755 5.1961 2.9872 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 2.2527 1.4898 -2.1047 27 1 3.0760 3.8067 -2.1331 28 1 3.3258 5.0674 -0.0388 29 1 0.9995 -0.1687 5.1361 30 1 4.1451 5.1871 3.1971 31 1 2.8610 5.9457 2.2255 32 1 2.5284 5.4374 3.8986 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213230353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:19 Heat of formation + Delta-G solvation = 34.715594 kcal Electronic energy + Delta-G solvation = -15738.824674 eV Core-core repulsion = 13277.499284 eV Total energy + Delta-G solvation = -2461.325390 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.11850 -38.20672 -35.55470 -34.74757 -33.75346 -30.71332 -29.67725 -27.64884 -27.30869 -24.31543 -22.72928 -22.34624 -20.37828 -18.78530 -17.88879 -17.19652 -16.50023 -16.11646 -15.84132 -15.12762 -14.92710 -14.39239 -14.03384 -14.02485 -13.56616 -13.35640 -13.18624 -12.93892 -12.66108 -12.56707 -12.35798 -12.01737 -11.89866 -11.66917 -11.59374 -11.06651 -10.60664 -9.75567 -9.00814 -8.48153 -8.47987 -6.51170 0.52876 1.03329 1.41079 1.44757 1.57849 2.16768 2.37382 2.48134 3.18609 3.62284 3.95548 4.12797 4.22458 4.36094 4.44866 4.52135 4.61657 4.67657 4.70064 4.77426 4.93747 4.99184 5.07948 5.18193 5.22296 5.41781 5.44584 5.63752 5.73387 5.96378 6.00971 6.20239 6.30172 6.58060 6.81965 7.22571 8.11017 8.44580 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.009696 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.818854 B = 2887.117650 C = 3826.147775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.160 4.160 6 C -0.115 4.115 7 C -0.031 4.031 8 C 0.059 3.941 9 N -0.570 5.570 10 C 0.382 3.618 11 C -0.471 4.471 12 H 0.101 0.899 13 C 0.030 3.970 14 N -0.766 5.766 15 Si 1.000 3.000 16 H -0.247 1.247 17 H -0.267 1.267 18 H -0.268 1.268 19 N -0.550 5.550 20 C 0.098 3.902 21 H 0.018 0.982 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.036 0.964 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.282 0.718 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 4.063 -4.077 5.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.144 4.144 5 C -0.181 4.181 6 C -0.136 4.136 7 C -0.139 4.139 8 C -0.067 4.067 9 N -0.294 5.294 10 C 0.143 3.857 11 C -0.508 4.508 12 H 0.119 0.881 13 C -0.192 4.192 14 N -0.389 5.389 15 Si 0.819 3.181 16 H -0.170 1.170 17 H -0.192 1.192 18 H -0.193 1.193 19 N -0.246 5.246 20 C -0.044 4.044 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.055 0.945 26 H 0.159 0.841 27 H 0.166 0.834 28 H 0.142 0.858 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.812 3.229 -3.757 5.020 hybrid contribution 0.240 0.715 0.731 1.051 sum 1.052 3.943 -3.025 5.080 Atomic orbital electron populations 1.21538 0.95012 1.01356 1.00440 1.20196 0.96149 0.92435 1.01031 1.19073 1.04782 0.96875 0.90407 1.20561 1.01662 0.95747 0.96423 1.20861 1.05218 0.94941 0.97047 1.20010 1.04443 0.99844 0.89325 1.19388 1.10253 0.97626 0.86586 1.19934 1.00279 0.92324 0.94124 1.71213 1.32790 1.26699 0.98739 1.20899 0.90276 0.80810 0.93717 1.18954 1.42811 1.01430 0.87649 0.88131 1.26935 0.92565 0.93627 1.06075 1.70125 1.26713 1.02497 1.39584 0.84905 0.78772 0.80002 0.74420 1.17034 1.19221 1.19258 1.45663 1.60465 1.13916 1.04572 1.21702 1.00326 0.81407 1.00938 0.96235 0.91903 0.91400 0.89598 0.94498 0.84060 0.83420 0.85801 0.90755 0.91882 0.89688 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.90 71.98 0.71 -4.05 16 2 C -0.06 -2.47 6.07 29.85 0.18 -2.29 16 3 C -0.11 -4.92 5.15 -19.75 -0.10 -5.02 16 4 C -0.12 -4.60 9.58 22.02 0.21 -4.39 16 5 C -0.16 -5.64 10.04 22.40 0.22 -5.41 16 6 C -0.11 -4.57 10.04 22.32 0.22 -4.34 16 7 C -0.03 -1.51 6.88 39.05 0.27 -1.24 16 8 C 0.06 3.20 6.91 40.14 0.28 3.48 16 9 N -0.57 -34.31 9.33 -186.53 -1.74 -36.05 16 10 C 0.38 21.76 7.41 133.69 0.99 22.75 16 11 C -0.47 -25.11 8.99 23.26 0.21 -24.90 16 12 H 0.10 4.80 7.10 -2.91 -0.02 4.78 16 13 C 0.03 1.55 5.50 85.39 0.47 2.02 16 14 N -0.77 -42.64 11.85 21.89 0.26 -42.39 16 15 Si 1.00 37.57 29.56 68.60 2.03 39.59 16 16 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 17 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 19 N -0.55 -27.03 3.26 -536.25 -1.75 -28.78 16 20 C 0.10 3.53 10.93 127.77 1.40 4.93 16 21 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.09 2.82 8.04 -2.39 -0.02 2.80 16 25 H 0.04 1.73 8.12 -2.38 -0.02 1.71 16 26 H 0.14 4.13 8.05 -2.91 -0.02 4.11 16 27 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.28 14.16 8.29 -92.71 -0.77 13.39 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.08 2.77 7.32 -2.38 -0.02 2.75 16 Total: -1.00 -69.94 276.47 4.97 -64.96 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 1.11 Total: 21.13 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 5.06 Total: -18.48 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.23 Total: -107.21 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.59 kcal Total: -69.94 4.97 -64.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213230353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.679 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds