Wall clock time and date at job start Mon Mar 30 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39035 * 119.71243 * 2 1 4 4 C 1.36357 * 120.76156 * 180.25777 * 3 2 1 5 5 C 1.40537 * 119.84749 * 359.45237 * 4 3 2 6 6 N 1.33964 * 133.20504 * 180.24982 * 5 4 3 7 7 C 1.32465 * 109.78629 * 180.02562 * 6 5 4 8 8 C 1.40194 * 125.30731 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00341 * 180.02562 * 8 7 6 10 10 C 1.40354 * 119.99732 * 0.02562 * 8 7 6 11 11 N 1.30582 * 120.00000 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99904 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46764 * 59.99921 * 12 10 8 14 14 H 1.48494 * 109.47197 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47280 * 300.00312 * 12 10 8 16 16 N 1.37848 * 109.39303 * 0.02562 * 7 6 5 17 17 C 1.46491 * 126.54147 * 180.02562 * 16 7 6 18 18 C 1.37969 * 106.92256 * 359.97438 * 16 7 6 19 19 C 1.37968 * 119.71196 * 179.69302 * 2 1 3 20 20 C 1.50694 * 120.11724 * 0.04373 * 19 2 1 21 21 H 1.08997 * 109.47163 * 270.31036 * 1 2 3 22 22 H 1.09001 * 109.46968 * 30.31132 * 1 2 3 23 23 H 1.09003 * 109.46941 * 150.30404 * 1 2 3 24 24 H 1.08000 * 119.62330 * 359.96849 * 3 2 1 25 25 H 1.07997 * 120.07567 * 179.72967 * 4 3 2 26 26 H 0.96998 * 120.00387 * 180.02562 * 11 10 8 27 27 H 1.09004 * 109.47246 * 96.51523 * 17 16 7 28 28 H 1.08996 * 109.47426 * 216.51307 * 17 16 7 29 29 H 1.09001 * 109.47400 * 336.51952 * 17 16 7 30 30 H 1.09002 * 109.47173 * 263.68262 * 20 19 2 31 31 H 1.09001 * 109.47374 * 23.68699 * 20 19 2 32 32 H 1.09006 * 109.46884 * 143.68539 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.2076 0.0000 4 6 3.5595 1.2325 -0.0053 5 6 4.2812 0.0266 0.0009 6 7 5.5901 -0.2589 0.0023 7 6 5.7625 -1.5723 0.0085 8 6 7.0023 -2.2267 0.0121 9 1 7.0433 -3.3059 0.0167 10 6 8.1903 -1.4793 0.0099 11 7 8.1408 -0.1745 0.0049 12 14 9.8423 -2.3513 0.0155 13 1 9.9544 -3.2069 -1.1929 14 1 10.9336 -1.3442 0.0126 15 1 9.9521 -3.1959 1.2320 16 7 4.5329 -2.1954 0.0106 17 6 4.2869 -3.6394 0.0177 18 6 3.5780 -1.1995 0.0061 19 6 2.1909 -1.1983 0.0064 20 6 1.4336 -2.5011 0.0124 21 1 -0.3633 0.0056 1.0276 22 1 -0.3633 0.8872 -0.5187 23 1 -0.3633 -0.8927 -0.5091 24 1 1.6454 2.1365 -0.0005 25 1 4.0835 2.1768 -0.0096 26 1 8.9618 0.3421 0.0030 27 1 4.1101 -3.9730 1.0403 28 1 3.4121 -3.8620 -0.5933 29 1 5.1553 -4.1580 -0.3885 30 1 1.3480 -2.8669 1.0356 31 1 0.4376 -2.3443 -0.4019 32 1 1.9673 -3.2344 -0.5922 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213230710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:07 Heat of formation + Delta-G solvation = 58.395678 kcal Electronic energy + Delta-G solvation = -15714.527345 eV Core-core repulsion = 13254.228801 eV Total energy + Delta-G solvation = -2460.298544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41113 -36.83441 -33.66925 -33.42255 -30.74867 -30.17762 -27.69900 -26.76830 -24.73890 -24.26313 -21.21441 -19.82027 -18.99406 -16.96189 -15.91224 -15.50012 -14.69951 -14.59470 -14.42294 -13.42022 -13.19583 -12.75568 -12.48708 -12.45043 -12.10693 -12.04266 -11.75991 -11.51530 -11.32666 -11.30249 -10.70540 -10.45182 -10.29448 -10.13714 -10.07673 -9.29860 -8.79686 -7.88797 -7.15518 -6.69664 -6.65803 -4.59844 2.22425 2.71868 3.00661 3.02463 3.04481 3.80505 4.10853 4.14683 4.90418 5.45725 5.50650 5.53644 5.66963 5.74190 5.87220 5.90576 5.96729 5.99317 6.10361 6.18377 6.29201 6.40737 6.43166 6.62095 6.84232 6.91287 7.01223 7.32660 7.49501 7.65238 7.75684 7.93504 8.00798 8.34294 8.65283 9.04427 9.97237 10.23522 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043027 B = 0.007824 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.595228 B = 3578.081033 C = 4202.927071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.154 4.154 3 C -0.117 4.117 4 C -0.129 4.129 5 C 0.107 3.893 6 N -0.535 5.535 7 C 0.418 3.582 8 C -0.443 4.443 9 H 0.086 0.914 10 C 0.077 3.923 11 N -0.717 5.717 12 Si 0.919 3.081 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.264 1.264 16 N -0.542 5.542 17 C 0.097 3.903 18 C 0.000 4.000 19 C -0.071 4.071 20 C -0.113 4.113 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.280 0.720 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.598 -4.099 -0.114 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.150 4.150 5 C -0.021 4.021 6 N -0.259 5.259 7 C 0.181 3.819 8 C -0.481 4.481 9 H 0.104 0.896 10 C -0.150 4.150 11 N -0.339 5.339 12 Si 0.742 3.258 13 H -0.189 1.189 14 H -0.200 1.200 15 H -0.189 1.189 16 N -0.238 5.238 17 C -0.046 4.046 18 C -0.108 4.108 19 C -0.075 4.075 20 C -0.170 4.170 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.826 -3.451 -0.116 6.773 hybrid contribution 0.155 -1.014 0.053 1.027 sum -5.671 -4.466 -0.063 7.218 Atomic orbital electron populations 1.20567 0.92757 1.01095 1.00583 1.18908 0.94185 0.91957 1.10618 1.20067 0.93500 0.96114 1.04105 1.19744 0.92759 0.95327 1.07176 1.19555 0.91667 0.91822 0.99022 1.71375 1.11595 1.10391 1.32491 1.20452 0.84191 0.86555 0.90708 1.18451 0.87314 0.94120 1.48170 0.89572 1.25859 1.00896 0.94778 0.93487 1.69964 1.29897 1.05985 1.28085 0.86209 0.79995 0.79733 0.79837 1.18878 1.19983 1.18881 1.45359 1.06120 1.04321 1.67981 1.21641 1.01854 0.80236 1.00911 1.18662 0.90339 0.90373 1.11388 1.18260 0.89448 0.94342 1.05446 1.20904 0.99623 0.95416 1.01022 0.92987 0.92923 0.92560 0.87808 0.87400 0.90922 0.93342 0.91667 0.90534 0.92547 0.91848 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.58 36.01 0.34 -1.04 16 2 C -0.15 -3.00 5.89 -104.42 -0.62 -3.62 16 3 C -0.12 -2.38 9.61 -39.96 -0.38 -2.76 16 4 C -0.13 -3.03 10.07 -39.39 -0.40 -3.43 16 5 C 0.11 2.88 7.21 -84.89 -0.61 2.27 16 6 N -0.54 -15.75 9.33 -10.31 -0.10 -15.85 16 7 C 0.42 11.53 7.41 -155.68 -1.15 10.38 16 8 C -0.44 -11.52 8.99 -38.05 -0.34 -11.86 16 9 H 0.09 2.01 6.94 -52.49 -0.36 1.65 16 10 C 0.08 1.93 5.50 -17.29 -0.10 1.84 16 11 N -0.72 -19.32 11.85 55.57 0.66 -18.66 16 12 Si 0.92 18.07 29.56 -169.99 -5.03 13.04 16 13 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 14 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 15 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 16 N -0.54 -13.11 3.26 -120.85 -0.39 -13.50 16 17 C 0.10 1.78 10.33 59.84 0.62 2.40 16 18 C 0.00 0.00 6.78 -83.75 -0.57 -0.57 16 19 C -0.07 -1.49 5.89 -104.55 -0.62 -2.11 16 20 C -0.11 -1.86 9.08 36.00 0.33 -1.53 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 23 H 0.06 0.76 5.86 -51.93 -0.30 0.46 16 24 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 25 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 26 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.05 5.35 -51.93 -0.28 0.77 16 29 H 0.08 1.32 7.06 -51.93 -0.37 0.95 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.90 5.70 -51.93 -0.30 0.60 16 32 H 0.06 0.91 5.19 -51.93 -0.27 0.64 16 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -31.07 264.67 -7.91 -38.98 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.55 Total: 2.03 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.49 Total: -10.02 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.17 Total: -48.01 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.07 -7.91 -38.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213230710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.374 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds