Wall clock time and date at job start Mon Mar 30 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39035 * 119.71243 * 2 1 4 4 C 1.36357 * 120.76156 * 180.25777 * 3 2 1 5 5 C 1.40537 * 119.84749 * 359.45237 * 4 3 2 6 6 N 1.33964 * 133.20504 * 180.24982 * 5 4 3 7 7 C 1.32465 * 109.78629 * 180.02562 * 6 5 4 8 8 C 1.40194 * 125.30731 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00341 * 180.02562 * 8 7 6 10 10 C 1.40354 * 119.99732 * 0.02562 * 8 7 6 11 11 N 1.30582 * 120.00000 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99904 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46764 * 59.99921 * 12 10 8 14 14 H 1.48494 * 109.47197 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47280 * 300.00312 * 12 10 8 16 16 N 1.37848 * 109.39303 * 0.02562 * 7 6 5 17 17 C 1.46491 * 126.54147 * 180.02562 * 16 7 6 18 18 C 1.37969 * 106.92256 * 359.97438 * 16 7 6 19 19 C 1.37968 * 119.71196 * 179.69302 * 2 1 3 20 20 C 1.50694 * 120.11724 * 0.04373 * 19 2 1 21 21 H 1.08997 * 109.47163 * 270.31036 * 1 2 3 22 22 H 1.09001 * 109.46968 * 30.31132 * 1 2 3 23 23 H 1.09003 * 109.46941 * 150.30404 * 1 2 3 24 24 H 1.08000 * 119.62330 * 359.96849 * 3 2 1 25 25 H 1.07997 * 120.07567 * 179.72967 * 4 3 2 26 26 H 0.96998 * 120.00387 * 180.02562 * 11 10 8 27 27 H 1.09004 * 109.47246 * 96.51523 * 17 16 7 28 28 H 1.08996 * 109.47426 * 216.51307 * 17 16 7 29 29 H 1.09001 * 109.47400 * 336.51952 * 17 16 7 30 30 H 1.09002 * 109.47173 * 263.68262 * 20 19 2 31 31 H 1.09001 * 109.47374 * 23.68699 * 20 19 2 32 32 H 1.09006 * 109.46884 * 143.68539 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.2076 0.0000 4 6 3.5595 1.2325 -0.0053 5 6 4.2812 0.0266 0.0009 6 7 5.5901 -0.2589 0.0023 7 6 5.7625 -1.5723 0.0085 8 6 7.0023 -2.2267 0.0121 9 1 7.0433 -3.3059 0.0167 10 6 8.1903 -1.4793 0.0099 11 7 8.1408 -0.1745 0.0049 12 14 9.8423 -2.3513 0.0155 13 1 9.9544 -3.2069 -1.1929 14 1 10.9336 -1.3442 0.0126 15 1 9.9521 -3.1959 1.2320 16 7 4.5329 -2.1954 0.0106 17 6 4.2869 -3.6394 0.0177 18 6 3.5780 -1.1995 0.0061 19 6 2.1909 -1.1983 0.0064 20 6 1.4336 -2.5011 0.0124 21 1 -0.3633 0.0056 1.0276 22 1 -0.3633 0.8872 -0.5187 23 1 -0.3633 -0.8927 -0.5091 24 1 1.6454 2.1365 -0.0005 25 1 4.0835 2.1768 -0.0096 26 1 8.9618 0.3421 0.0030 27 1 4.1101 -3.9730 1.0403 28 1 3.4121 -3.8620 -0.5933 29 1 5.1553 -4.1580 -0.3885 30 1 1.3480 -2.8669 1.0356 31 1 0.4376 -2.3443 -0.4019 32 1 1.9673 -3.2344 -0.5922 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213230710.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:07 Heat of formation + Delta-G solvation = 39.970063 kcal Electronic energy + Delta-G solvation = -15715.326340 eV Core-core repulsion = 13254.228801 eV Total energy + Delta-G solvation = -2461.097539 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.20150 -38.48500 -35.48032 -35.14014 -32.39693 -31.77456 -29.37906 -28.38776 -26.36149 -25.82868 -22.99295 -21.52464 -20.75848 -18.81810 -17.63444 -17.21377 -16.37381 -16.27454 -15.95942 -14.94601 -14.58458 -14.33950 -14.13856 -13.99747 -13.64633 -13.38891 -13.31142 -13.12349 -12.90501 -12.61982 -12.39592 -12.03668 -11.86359 -11.72831 -11.65302 -11.04145 -10.58709 -9.81231 -8.96849 -8.49559 -8.44092 -6.53996 0.48571 0.99330 1.40595 1.46909 1.55843 2.16219 2.31830 2.46453 3.12503 3.60091 3.94288 4.07875 4.19500 4.33814 4.41466 4.49028 4.56589 4.60551 4.76034 4.82868 4.93731 5.01405 5.07748 5.16381 5.18669 5.25781 5.41201 5.63598 5.70237 5.93064 6.02516 6.17133 6.26128 6.55659 6.78976 7.20853 8.07570 8.43442 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043027 B = 0.007824 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.595228 B = 3578.081033 C = 4202.927071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.143 4.143 3 C -0.114 4.114 4 C -0.151 4.151 5 C 0.046 3.954 6 N -0.586 5.586 7 C 0.385 3.615 8 C -0.472 4.472 9 H 0.104 0.896 10 C 0.028 3.972 11 N -0.772 5.772 12 Si 1.004 2.996 13 H -0.253 1.253 14 H -0.272 1.272 15 H -0.254 1.254 16 N -0.545 5.545 17 C 0.091 3.909 18 C -0.018 4.018 19 C -0.081 4.081 20 C -0.108 4.108 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.140 0.860 25 H 0.101 0.899 26 H 0.283 0.717 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 -5.757 -0.136 10.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C -0.134 4.134 4 C -0.172 4.172 5 C -0.080 4.080 6 N -0.311 5.311 7 C 0.146 3.854 8 C -0.510 4.510 9 H 0.122 0.878 10 C -0.194 4.194 11 N -0.396 5.396 12 Si 0.823 3.177 13 H -0.177 1.177 14 H -0.196 1.196 15 H -0.178 1.178 16 N -0.240 5.240 17 C -0.051 4.051 18 C -0.126 4.126 19 C -0.085 4.085 20 C -0.164 4.164 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.158 0.842 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.169 -5.123 -0.138 9.644 hybrid contribution 0.590 -0.410 0.064 0.721 sum -7.579 -5.533 -0.074 9.384 Atomic orbital electron populations 1.20661 0.88546 1.03149 1.02360 1.19626 0.97116 0.90967 1.06871 1.20515 0.92215 0.98413 1.02247 1.20001 0.94422 0.94367 1.08434 1.20111 0.91708 0.94199 1.01956 1.71215 1.13613 1.12216 1.34054 1.20851 0.85864 0.86831 0.91854 1.18947 0.87618 0.95150 1.49299 0.87764 1.27031 1.05046 0.95294 0.92003 1.70125 1.31189 1.08155 1.30124 0.84947 0.74037 0.78350 0.80392 1.17690 1.19605 1.17763 1.45560 1.05073 1.06216 1.67184 1.21954 1.03330 0.77280 1.02515 1.19114 0.91906 0.89658 1.11950 1.18888 0.88252 0.97228 1.04110 1.20948 1.00423 0.92875 1.02181 0.91118 0.90953 0.90569 0.84185 0.88091 0.90666 0.91785 0.89102 0.89848 0.91268 0.88842 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.21 9.58 71.24 0.68 -1.52 16 2 C -0.14 -5.15 5.89 -19.73 -0.12 -5.27 16 3 C -0.11 -4.45 9.61 22.02 0.21 -4.23 16 4 C -0.15 -7.37 10.07 22.39 0.23 -7.14 16 5 C 0.05 2.57 7.21 40.14 0.29 2.86 16 6 N -0.59 -36.76 9.33 -186.52 -1.74 -38.50 16 7 C 0.39 22.31 7.41 133.69 0.99 23.30 16 8 C -0.47 -25.46 8.99 23.26 0.21 -25.25 16 9 H 0.10 4.95 6.94 -2.91 -0.02 4.92 16 10 C 0.03 1.47 5.50 85.39 0.47 1.94 16 11 N -0.77 -44.06 11.85 21.89 0.26 -43.80 16 12 Si 1.00 37.72 29.56 68.60 2.03 39.75 16 13 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 14 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 15 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 16 N -0.54 -26.85 3.26 -536.26 -1.75 -28.60 16 17 C 0.09 3.24 10.33 127.77 1.32 4.56 16 18 C -0.02 -0.91 6.78 39.05 0.26 -0.64 16 19 C -0.08 -3.23 5.89 -19.82 -0.12 -3.35 16 20 C -0.11 -3.11 9.08 71.23 0.65 -2.47 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.07 1.52 8.08 -2.39 -0.02 1.51 16 23 H 0.08 1.59 5.86 -2.39 -0.01 1.58 16 24 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 25 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 26 H 0.28 14.58 8.29 -92.71 -0.77 13.81 16 27 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.09 2.72 5.35 -2.39 -0.01 2.70 16 29 H 0.08 2.81 7.06 -2.39 -0.02 2.80 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 2.12 5.70 -2.39 -0.01 2.11 16 32 H 0.06 1.72 5.19 -2.38 -0.01 1.71 16 Total: -1.00 -73.41 264.67 5.02 -68.40 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 1.14 Total: 19.97 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.08 Total: -17.21 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -3.23 Total: -110.90 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -73.41 5.02 -68.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213230710.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.368 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds