Wall clock time and date at job start Mon Mar 30 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39037 * 119.62198 * 2 1 4 4 C 1.37962 * 120.57680 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.76271 * 359.97438 * 4 3 2 6 6 C 1.41334 * 119.77612 * 359.97438 * 5 4 3 7 7 N 1.33977 * 107.52521 * 180.02562 * 6 5 4 8 8 C 1.32465 * 109.78530 * 0.02562 * 7 6 5 9 9 C 1.40189 * 125.30616 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99720 * 180.02562 * 9 8 7 11 11 C 1.40347 * 119.99677 * 0.30655 * 9 8 7 12 12 N 1.30584 * 120.00218 * 359.71965 * 11 9 8 13 13 Si 1.86801 * 119.99687 * 179.72162 * 11 9 8 14 14 H 1.48504 * 109.47306 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47021 * 119.99642 * 13 11 9 16 16 H 1.48501 * 109.47039 * 240.00059 * 13 11 9 17 17 N 1.37848 * 109.38750 * 0.22996 * 8 7 6 18 18 C 1.46500 * 126.53623 * 179.73358 * 17 8 7 19 19 C 1.36351 * 119.61750 * 180.02562 * 2 1 3 20 20 C 1.50702 * 120.07819 * 0.02562 * 19 2 1 21 21 H 1.08999 * 109.47154 * 89.99913 * 1 2 3 22 22 H 1.08993 * 109.47007 * 210.00000 * 1 2 3 23 23 H 1.08997 * 109.47091 * 330.00272 * 1 2 3 24 24 H 1.08008 * 119.71266 * 359.97438 * 3 2 1 25 25 H 1.07994 * 120.11927 * 180.02562 * 4 3 2 26 26 H 0.97004 * 119.99597 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.47281 * 90.02441 * 18 17 8 28 28 H 1.09007 * 109.46934 * 210.02497 * 18 17 8 29 29 H 1.08999 * 109.47425 * 330.02027 * 18 17 8 30 30 H 1.09000 * 109.47234 * 269.98312 * 20 19 2 31 31 H 1.09001 * 109.46896 * 29.98596 * 20 19 2 32 32 H 1.09000 * 109.47172 * 149.98045 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.2087 0.0000 4 6 3.5737 1.2316 -0.0005 5 6 4.2823 0.0390 -0.0005 6 6 3.5862 -1.1910 0.0006 7 7 4.4994 -2.1714 0.0009 8 6 5.7171 -1.6499 0.0006 9 6 6.9123 -2.3826 0.0013 10 1 7.8615 -1.8674 0.0015 11 6 6.8752 -3.7856 -0.0041 12 7 5.7275 -4.4084 -0.0042 13 14 8.4678 -4.7619 -0.0110 14 1 9.6216 -3.8270 -0.0102 15 1 8.5263 -5.6220 1.1981 16 1 8.5215 -5.6126 -1.2269 17 7 5.6258 -0.2744 0.0053 18 6 6.7426 0.6737 0.0121 19 6 2.1809 -1.1854 -0.0005 20 6 1.4205 -2.4865 -0.0017 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6434 2.1377 -0.0004 25 1 4.1000 2.1747 -0.0001 26 1 5.7020 -5.3781 -0.0076 27 1 7.0224 0.9129 -1.0138 28 1 6.4421 1.5853 0.5288 29 1 7.5942 0.2285 0.5266 30 1 1.2370 -2.8010 1.0257 31 1 0.4689 -2.3506 -0.5156 32 1 2.0056 -3.2488 -0.5161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213230790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:06 Heat of formation + Delta-G solvation = 52.148702 kcal Electronic energy + Delta-G solvation = -15675.820753 eV Core-core repulsion = 13215.251320 eV Total energy + Delta-G solvation = -2460.569434 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35647 -36.89496 -33.70890 -32.73417 -31.60722 -29.66808 -27.64354 -26.07350 -25.09452 -24.46192 -20.87952 -20.09377 -18.81063 -16.90606 -15.95810 -15.48806 -14.60096 -14.44673 -14.30163 -13.27871 -13.24258 -12.73053 -12.54689 -12.15345 -11.94340 -11.77921 -11.72050 -11.38057 -11.33572 -11.27410 -10.81876 -10.41536 -10.27394 -10.16633 -10.11133 -9.24537 -8.79903 -7.88333 -7.12399 -6.69838 -6.66590 -4.59862 2.25381 2.67987 2.98790 3.02622 3.06916 3.80471 4.14821 4.15268 4.91304 5.47925 5.57993 5.60454 5.69411 5.93860 5.95802 6.01509 6.08193 6.16459 6.19998 6.35082 6.39388 6.57398 6.63350 6.69658 6.86142 7.00439 7.06193 7.28179 7.52580 7.67340 7.77982 7.95307 8.01560 8.34916 8.65435 9.04709 9.96999 10.22769 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.008459 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.315083 B = 3309.367691 C = 4096.924469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.098 4.098 3 C -0.174 4.174 4 C -0.105 4.105 5 C -0.009 4.009 6 C 0.113 3.887 7 N -0.531 5.531 8 C 0.417 3.583 9 C -0.442 4.442 10 H 0.087 0.913 11 C 0.077 3.923 12 N -0.716 5.716 13 Si 0.918 3.082 14 H -0.261 1.261 15 H -0.271 1.271 16 H -0.272 1.272 17 N -0.545 5.545 18 C 0.105 3.895 19 C -0.095 4.095 20 C -0.092 4.092 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.103 0.897 25 H 0.095 0.905 26 H 0.278 0.722 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 4.760 0.060 4.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.014 4.014 7 N -0.254 5.254 8 C 0.180 3.820 9 C -0.479 4.479 10 H 0.105 0.895 11 C -0.150 4.150 12 N -0.338 5.338 13 Si 0.742 3.258 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.197 1.197 17 N -0.241 5.241 18 C -0.040 4.040 19 C -0.098 4.098 20 C -0.148 4.148 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.635 3.767 0.063 4.107 hybrid contribution 1.091 0.648 -0.011 1.269 sum -0.544 4.414 0.052 4.448 Atomic orbital electron populations 1.20644 0.92754 1.01374 1.00927 1.18845 0.94483 0.92444 1.04302 1.20135 0.92637 0.96167 1.10525 1.19552 0.93481 0.93770 1.05906 1.18874 0.84654 0.96700 1.11382 1.19335 0.93550 0.89409 0.99145 1.71347 0.95866 1.25866 1.32354 1.20481 0.94334 0.76459 0.90743 1.18522 0.90536 0.90924 1.47939 0.89516 1.25855 0.97846 0.97825 0.93489 1.69985 1.25774 1.09812 1.28227 0.86110 0.81300 0.79720 0.78720 1.18457 1.19661 1.19664 1.45419 1.03308 1.07326 1.68058 1.21415 0.89337 0.92193 1.01005 1.18417 0.90140 0.94331 1.06937 1.20478 0.98103 0.95495 1.00752 0.92544 0.92190 0.92838 0.87843 0.88666 0.91068 0.93265 0.92224 0.90689 0.92966 0.93317 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.14 36.01 0.33 -1.24 16 2 C -0.10 -1.99 5.84 -105.00 -0.61 -2.60 16 3 C -0.17 -3.44 9.68 -39.39 -0.38 -3.82 16 4 C -0.11 -2.25 10.04 -39.50 -0.40 -2.64 16 5 C -0.01 -0.21 6.88 -83.75 -0.58 -0.79 16 6 C 0.11 3.02 6.89 -84.89 -0.58 2.44 16 7 N -0.53 -15.37 9.33 -10.31 -0.10 -15.47 16 8 C 0.42 11.45 7.41 -155.68 -1.15 10.30 16 9 C -0.44 -11.43 8.99 -38.06 -0.34 -11.78 16 10 H 0.09 2.04 7.10 -52.49 -0.37 1.66 16 11 C 0.08 1.92 5.50 -17.29 -0.10 1.82 16 12 N -0.72 -19.03 11.85 55.57 0.66 -18.37 16 13 Si 0.92 18.00 29.56 -169.99 -5.03 12.97 16 14 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 15 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 17 N -0.54 -13.27 3.26 -120.84 -0.39 -13.66 16 18 C 0.10 1.93 10.93 59.85 0.65 2.58 16 19 C -0.10 -2.21 5.89 -104.44 -0.62 -2.82 16 20 C -0.09 -1.88 9.16 36.01 0.33 -1.55 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.89 6.63 -51.93 -0.34 0.55 16 23 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 24 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 25 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.29 7.32 -51.93 -0.38 0.91 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.84 6.64 -51.93 -0.34 0.49 16 32 H 0.07 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 272.53 15.07 4.11 4.11 Total: -1.00 -30.70 272.53 -8.15 -38.85 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.95 Total: 1.68 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.45 Total: -10.11 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.17 Total: -47.50 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.70 -8.15 -38.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213230790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.999 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds