Wall clock time and date at job start Mon Mar 30 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.46967 * 2 1 4 4 C 1.86296 * 109.47239 * 120.00204 * 2 1 3 5 5 O 1.63108 * 109.47125 * 240.00346 * 2 1 3 6 6 C 1.42900 * 114.00135 * 59.99740 * 5 2 1 7 7 C 1.50690 * 109.47121 * 270.00286 * 6 5 2 8 8 N 1.27949 * 120.00231 * 154.35465 * 7 6 5 9 9 Si 1.86808 * 120.00188 * 334.35229 * 7 6 5 10 10 H 1.48495 * 109.47020 * 95.26728 * 9 7 6 11 11 H 1.48496 * 109.47245 * 215.26872 * 9 7 6 12 12 H 1.48505 * 109.46718 * 335.27319 * 9 7 6 13 13 C 1.53001 * 109.47091 * 150.00096 * 6 5 2 14 14 H 1.08994 * 109.86903 * 180.84429 * 13 6 5 15 15 C 1.54103 * 109.87594 * 301.84852 * 13 6 5 16 16 C 1.54810 * 104.18893 * 121.45718 * 15 13 6 17 17 C 1.54992 * 102.09240 * 20.87416 * 16 15 13 18 18 O 1.43744 * 109.87743 * 59.67591 * 13 6 5 19 19 H 1.09001 * 109.46972 * 60.00326 * 1 2 3 20 20 H 1.09000 * 109.47004 * 299.99783 * 1 2 3 21 21 H 1.09004 * 109.46825 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47081 * 60.00264 * 3 2 1 23 23 H 1.09003 * 109.46656 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47294 * 300.00117 * 3 2 1 25 25 H 1.08999 * 109.47230 * 59.99847 * 4 2 1 26 26 H 1.08999 * 109.47025 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47133 * 299.99934 * 4 2 1 28 28 H 1.09004 * 109.46804 * 29.99896 * 6 5 2 29 29 H 0.96993 * 120.00028 * 179.97438 * 8 7 6 30 30 H 1.09004 * 110.48717 * 240.12562 * 15 13 6 31 31 H 1.08993 * 110.49354 * 2.77506 * 15 13 6 32 32 H 1.08991 * 110.91489 * 139.07799 * 16 15 13 33 33 H 1.09000 * 110.90388 * 262.64556 * 16 15 13 34 34 H 1.09005 * 110.62012 * 81.48212 * 17 16 15 35 35 H 1.09002 * 110.61916 * 204.32166 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 1.5211 5 8 2.4067 -0.7688 -1.3318 6 6 1.9850 -0.1725 -2.5601 7 6 0.6768 -0.7831 -2.9918 8 7 -0.1227 -0.1206 -3.7395 9 14 0.2221 -2.5075 -2.4355 10 1 -0.6291 -2.4276 -1.2214 11 1 -0.5241 -3.1965 -3.5187 12 1 1.4584 -3.2691 -2.1239 13 6 3.0434 -0.4199 -3.6369 14 1 2.7351 0.0453 -4.5731 15 6 4.3971 0.1606 -3.1842 16 6 5.3542 -1.0562 -3.1939 17 6 4.6204 -2.0389 -4.1416 18 8 3.2264 -1.8330 -3.8267 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 2.1206 2.2703 0.8900 23 1 3.5740 1.7564 0.0005 24 1 2.1206 2.2703 -0.8900 25 1 2.1207 -1.9059 1.5211 26 1 3.5740 -0.8786 1.5208 27 1 2.1207 -0.3645 2.4111 28 1 1.8556 0.9004 -2.4174 29 1 -0.9646 -0.5138 -4.0176 30 1 4.7400 0.9211 -3.8859 31 1 4.3176 0.5755 -2.1794 32 1 6.3287 -0.7815 -3.5972 33 1 5.4542 -1.4802 -2.1947 34 1 4.8196 -1.7882 -5.1835 35 1 4.9158 -3.0670 -3.9321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215282910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:47 Heat of formation + Delta-G solvation = -104.826721 kcal Electronic energy + Delta-G solvation = -15758.161286 eV Core-core repulsion = 13300.733925 eV Total energy + Delta-G solvation = -2457.427361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.74672 -38.21401 -35.87731 -32.94431 -31.20977 -29.62372 -28.60849 -28.52969 -26.95111 -23.41216 -22.02890 -21.04205 -18.68509 -17.38813 -17.14179 -16.79317 -15.94820 -15.73425 -14.87669 -14.67266 -14.50018 -14.25270 -13.97382 -13.88717 -13.50550 -13.35681 -13.21880 -13.15419 -12.87296 -12.67897 -12.46398 -12.13119 -12.08885 -11.86689 -11.82614 -11.54108 -11.17677 -10.77950 -10.56474 -10.42523 -9.79406 0.76556 1.17230 1.36991 1.60643 1.75628 1.81934 1.96203 2.18697 2.41039 2.91101 3.47730 3.68487 3.87565 3.99272 4.13923 4.28051 4.39084 4.48787 4.65193 4.67686 4.71119 4.71670 4.72215 4.73756 4.77442 4.85507 4.87334 4.94415 5.08171 5.23025 5.31961 5.44863 5.53229 5.57612 6.03036 6.81374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.521 4.521 2 Si 1.240 2.760 3 C -0.506 4.506 4 C -0.464 4.464 5 O -0.602 6.602 6 C 0.152 3.848 7 C -0.019 4.019 8 N -0.629 5.629 9 Si 0.923 3.077 10 H -0.237 1.237 11 H -0.255 1.255 12 H -0.209 1.209 13 C 0.089 3.911 14 H 0.085 0.915 15 C -0.149 4.149 16 C -0.151 4.151 17 C 0.046 3.954 18 O -0.361 6.361 19 H 0.070 0.930 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.341 0.659 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 0.710 0.717 2.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 Si 1.377 2.623 3 C -0.608 4.608 4 C -0.571 4.571 5 O -0.559 6.559 6 C 0.094 3.906 7 C -0.268 4.268 8 N -0.243 5.243 9 Si 0.739 3.261 10 H -0.161 1.161 11 H -0.180 1.180 12 H -0.131 1.131 13 C 0.030 3.970 14 H 0.102 0.898 15 C -0.186 4.186 16 C -0.188 4.188 17 C -0.031 4.031 18 O -0.280 6.280 19 H 0.089 0.911 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.712 0.470 0.448 1.831 hybrid contribution -0.539 0.162 0.229 0.608 sum 1.173 0.632 0.678 1.494 Atomic orbital electron populations 1.27228 1.25005 1.05138 1.04903 0.77481 0.63767 0.62175 0.58837 1.26934 1.06898 1.22299 1.04712 1.26264 1.06948 1.08680 1.15170 1.85473 1.77998 1.66805 1.25670 1.20686 0.90024 0.95828 0.84059 1.30948 0.96026 1.05458 0.94372 1.68043 1.07140 1.39634 1.09461 0.85713 0.82934 0.76269 0.81142 1.16052 1.17958 1.13058 1.22844 0.94486 0.83582 0.96115 0.89762 1.22931 0.93960 0.98584 1.03152 1.23080 0.98745 0.95650 1.01353 1.23553 0.81165 1.00471 0.97887 1.88894 1.26125 1.22059 1.90895 0.91128 0.90505 0.90569 0.90653 0.90807 0.91239 0.90685 0.90627 0.90479 0.88819 0.84156 0.90564 0.89701 0.90437 0.89938 0.92312 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 0.10 7.44 101.05 0.75 0.85 16 2 Si 1.24 -1.64 11.96 -169.99 -2.03 -3.68 16 3 C -0.51 0.70 8.56 101.05 0.87 1.56 16 4 C -0.46 0.46 8.65 101.05 0.87 1.34 16 5 O -0.60 -0.18 6.14 -44.07 -0.27 -0.45 16 6 C 0.15 0.08 1.68 -27.89 -0.05 0.03 16 7 C -0.02 -0.03 3.37 -13.90 -0.05 -0.08 16 8 N -0.63 -1.01 13.82 56.23 0.78 -0.24 16 9 Si 0.92 1.81 25.19 -169.99 -4.28 -2.47 16 10 H -0.24 -0.31 5.62 56.52 0.32 0.01 16 11 H -0.26 -0.65 7.11 56.52 0.40 -0.25 16 12 H -0.21 -0.60 7.11 56.52 0.40 -0.20 16 13 C 0.09 0.05 3.25 -26.15 -0.09 -0.03 16 14 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 15 C -0.15 0.15 6.41 -25.20 -0.16 -0.01 16 16 C -0.15 0.16 7.15 -24.73 -0.18 -0.01 16 17 C 0.05 0.00 7.72 38.21 0.29 0.29 16 18 O -0.36 -0.82 9.81 -44.07 -0.43 -1.25 16 19 H 0.07 0.01 7.24 -51.93 -0.38 -0.36 16 20 H 0.08 -0.06 7.96 -51.93 -0.41 -0.48 16 21 H 0.08 0.03 5.62 -51.93 -0.29 -0.26 16 22 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 23 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 24 H 0.07 -0.10 7.10 -51.93 -0.37 -0.46 16 25 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 27 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.09 -0.10 6.15 -51.93 -0.32 -0.42 16 29 H 0.34 0.09 8.23 -40.82 -0.34 -0.24 16 30 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 31 H 0.08 -0.13 7.34 -51.93 -0.38 -0.51 16 32 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 33 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 34 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 LS Contribution 279.30 15.07 4.21 4.21 Total: 0.00 -2.99 279.30 -5.73 -8.72 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -5.97 Total: -8.78 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 2.27 Total: 3.94 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: 0.78 Total: -0.24 kcal Atomic # 8 Polarization: -1.00 SS G_CDS: -0.70 Total: -1.70 kcal Atomic # 14 Polarization: 0.16 SS G_CDS: -6.32 Total: -6.15 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -2.99 -5.73 -8.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215282910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.109 kcal (2) G-P(sol) polarization free energy of solvation -2.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds