Wall clock time and date at job start Mon Mar 30 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.46967 * 2 1 4 4 C 1.86296 * 109.47239 * 120.00204 * 2 1 3 5 5 O 1.63108 * 109.47125 * 240.00346 * 2 1 3 6 6 C 1.42900 * 114.00135 * 59.99740 * 5 2 1 7 7 C 1.50690 * 109.47121 * 270.00286 * 6 5 2 8 8 N 1.27949 * 120.00231 * 154.35465 * 7 6 5 9 9 Si 1.86808 * 120.00188 * 334.35229 * 7 6 5 10 10 H 1.48495 * 109.47020 * 95.26728 * 9 7 6 11 11 H 1.48496 * 109.47245 * 215.26872 * 9 7 6 12 12 H 1.48505 * 109.46718 * 335.27319 * 9 7 6 13 13 C 1.53001 * 109.47091 * 150.00096 * 6 5 2 14 14 H 1.08994 * 109.86903 * 180.84429 * 13 6 5 15 15 C 1.54103 * 109.87594 * 301.84852 * 13 6 5 16 16 C 1.54810 * 104.18893 * 121.45718 * 15 13 6 17 17 C 1.54992 * 102.09240 * 20.87416 * 16 15 13 18 18 O 1.43744 * 109.87743 * 59.67591 * 13 6 5 19 19 H 1.09001 * 109.46972 * 60.00326 * 1 2 3 20 20 H 1.09000 * 109.47004 * 299.99783 * 1 2 3 21 21 H 1.09004 * 109.46825 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47081 * 60.00264 * 3 2 1 23 23 H 1.09003 * 109.46656 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47294 * 300.00117 * 3 2 1 25 25 H 1.08999 * 109.47230 * 59.99847 * 4 2 1 26 26 H 1.08999 * 109.47025 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47133 * 299.99934 * 4 2 1 28 28 H 1.09004 * 109.46804 * 29.99896 * 6 5 2 29 29 H 0.96993 * 120.00028 * 179.97438 * 8 7 6 30 30 H 1.09004 * 110.48717 * 240.12562 * 15 13 6 31 31 H 1.08993 * 110.49354 * 2.77506 * 15 13 6 32 32 H 1.08991 * 110.91489 * 139.07799 * 16 15 13 33 33 H 1.09000 * 110.90388 * 262.64556 * 16 15 13 34 34 H 1.09005 * 110.62012 * 81.48212 * 17 16 15 35 35 H 1.09002 * 110.61916 * 204.32166 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 1.5211 5 8 2.4067 -0.7688 -1.3318 6 6 1.9850 -0.1725 -2.5601 7 6 0.6768 -0.7831 -2.9918 8 7 -0.1227 -0.1206 -3.7395 9 14 0.2221 -2.5075 -2.4355 10 1 -0.6291 -2.4276 -1.2214 11 1 -0.5241 -3.1965 -3.5187 12 1 1.4584 -3.2691 -2.1239 13 6 3.0434 -0.4199 -3.6369 14 1 2.7351 0.0453 -4.5731 15 6 4.3971 0.1606 -3.1842 16 6 5.3542 -1.0562 -3.1939 17 6 4.6204 -2.0389 -4.1416 18 8 3.2264 -1.8330 -3.8267 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 2.1206 2.2703 0.8900 23 1 3.5740 1.7564 0.0005 24 1 2.1206 2.2703 -0.8900 25 1 2.1207 -1.9059 1.5211 26 1 3.5740 -0.8786 1.5208 27 1 2.1207 -0.3645 2.4111 28 1 1.8556 0.9004 -2.4174 29 1 -0.9646 -0.5138 -4.0176 30 1 4.7400 0.9211 -3.8859 31 1 4.3176 0.5755 -2.1794 32 1 6.3287 -0.7815 -3.5972 33 1 5.4542 -1.4802 -2.1947 34 1 4.8196 -1.7882 -5.1835 35 1 4.9158 -3.0670 -3.9321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215282910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:47 Heat of formation + Delta-G solvation = -96.319237 kcal Electronic energy + Delta-G solvation = -15757.792374 eV Core-core repulsion = 13300.733925 eV Total energy + Delta-G solvation = -2457.058449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73354 -38.22196 -35.94756 -32.90616 -31.18633 -29.53872 -28.54951 -28.41440 -26.93399 -23.39193 -21.97195 -21.08147 -18.70842 -17.37672 -17.14867 -16.81875 -15.98764 -15.72418 -14.89772 -14.68708 -14.44509 -14.22447 -13.92709 -13.86098 -13.45460 -13.27521 -13.14629 -13.07501 -12.86133 -12.63288 -12.43175 -12.18087 -12.05032 -11.92461 -11.82945 -11.50996 -11.20032 -10.70341 -10.53289 -10.42386 -9.88939 0.65307 1.04406 1.36782 1.46417 1.61158 1.91457 1.98914 2.07749 2.48670 2.94616 3.46440 3.75836 3.92750 4.05636 4.22233 4.32673 4.43832 4.54430 4.71839 4.73655 4.80409 4.80725 4.82437 4.83269 4.83863 4.88641 4.93236 5.06614 5.19295 5.33335 5.36465 5.51783 5.62564 5.66466 6.05974 6.73842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.532 4.532 2 Si 1.267 2.733 3 C -0.507 4.507 4 C -0.473 4.473 5 O -0.611 6.611 6 C 0.146 3.854 7 C -0.016 4.016 8 N -0.635 5.635 9 Si 0.925 3.075 10 H -0.229 1.229 11 H -0.267 1.267 12 H -0.225 1.225 13 C 0.083 3.917 14 H 0.085 0.915 15 C -0.148 4.148 16 C -0.148 4.148 17 C 0.038 3.962 18 O -0.386 6.386 19 H 0.066 0.934 20 H 0.082 0.918 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.346 0.654 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 1.590 0.901 3.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 Si 1.403 2.597 3 C -0.610 4.610 4 C -0.579 4.579 5 O -0.569 6.569 6 C 0.088 3.912 7 C -0.265 4.265 8 N -0.250 5.250 9 Si 0.743 3.257 10 H -0.152 1.152 11 H -0.192 1.192 12 H -0.147 1.147 13 C 0.024 3.976 14 H 0.103 0.897 15 C -0.185 4.185 16 C -0.186 4.186 17 C -0.038 4.038 18 O -0.305 6.305 19 H 0.085 0.915 20 H 0.101 0.899 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.164 0.836 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.241 1.341 0.641 2.689 hybrid contribution -0.724 -0.160 0.165 0.760 sum 1.517 1.181 0.807 2.085 Atomic orbital electron populations 1.27377 1.26287 1.04593 1.05019 0.77024 0.62511 0.62125 0.58009 1.26918 1.07241 1.21857 1.04982 1.26362 1.07159 1.08545 1.15873 1.85465 1.78091 1.67381 1.25958 1.20826 0.89428 0.96654 0.84245 1.30946 0.96521 1.04863 0.94206 1.68042 1.07559 1.39790 1.09631 0.85692 0.82154 0.76769 0.81066 1.15205 1.19207 1.14717 1.22969 0.95403 0.83036 0.96231 0.89737 1.22972 0.92946 0.98769 1.03859 1.23073 0.99288 0.95338 1.00878 1.23704 0.80474 1.01004 0.98625 1.88866 1.27408 1.23141 1.91093 0.91471 0.89938 0.91419 0.90388 0.90332 0.91003 0.91232 0.90434 0.89801 0.87088 0.83612 0.89269 0.89056 0.89058 0.90449 0.91576 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 0.12 7.44 113.37 0.84 0.96 16 2 Si 1.27 -3.62 11.96 68.60 0.82 -2.80 16 3 C -0.51 1.91 8.56 113.37 0.97 2.88 16 4 C -0.47 0.96 8.65 113.37 0.98 1.94 16 5 O -0.61 -0.42 6.14 -140.53 -0.86 -1.28 16 6 C 0.15 0.15 1.68 29.85 0.05 0.20 16 7 C -0.02 -0.05 3.37 88.67 0.30 0.24 16 8 N -0.64 -2.23 13.82 24.11 0.33 -1.89 16 9 Si 0.93 4.69 25.19 68.60 1.73 6.42 16 10 H -0.23 -0.79 5.62 99.48 0.56 -0.23 16 11 H -0.27 -1.79 7.11 99.48 0.71 -1.08 16 12 H -0.23 -1.69 7.11 99.48 0.71 -0.98 16 13 C 0.08 0.09 3.25 30.97 0.10 0.20 16 14 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 15 C -0.15 0.42 6.41 31.59 0.20 0.63 16 16 C -0.15 0.39 7.15 31.89 0.23 0.62 16 17 C 0.04 0.00 7.72 72.66 0.56 0.56 16 18 O -0.39 -1.99 9.81 -140.53 -1.38 -3.37 16 19 H 0.07 0.03 7.24 -2.39 -0.02 0.02 16 20 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 21 H 0.07 0.09 5.62 -2.39 -0.01 0.08 16 22 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 23 H 0.08 -0.35 7.96 -2.39 -0.02 -0.36 16 24 H 0.07 -0.28 7.10 -2.39 -0.02 -0.30 16 25 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 26 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 27 H 0.08 -0.30 7.96 -2.39 -0.02 -0.31 16 28 H 0.11 -0.32 6.15 -2.38 -0.01 -0.34 16 29 H 0.35 0.38 8.23 -92.71 -0.76 -0.39 16 30 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 31 H 0.09 -0.38 7.34 -2.39 -0.02 -0.40 16 32 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: 0.00 -6.97 279.30 5.78 -1.19 By element: Atomic # 1 Polarization: -7.38 SS G_CDS: 0.90 Total: -6.48 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 4.24 Total: 8.23 kcal Atomic # 7 Polarization: -2.23 SS G_CDS: 0.33 Total: -1.89 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -2.24 Total: -4.65 kcal Atomic # 14 Polarization: 1.07 SS G_CDS: 2.55 Total: 3.61 kcal Total: -6.97 5.78 -1.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215282910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.131 kcal (2) G-P(sol) polarization free energy of solvation -6.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds