Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39680 * 119.09477 * 2 1 4 4 C 1.35655 * 121.73008 * 179.97438 * 3 2 1 5 5 C 1.41123 * 119.53598 * 0.02562 * 4 3 2 6 6 C 1.47136 * 118.76488 * 359.97438 * 5 4 3 7 7 C 1.35642 * 119.09134 * 179.97438 * 2 1 3 8 8 N 1.32054 * 106.76387 * 179.97438 * 6 5 4 9 9 N 1.39961 * 108.95738 * 0.02562 * 8 6 5 10 10 C 1.46501 * 125.01854 * 179.97438 * 9 8 6 11 11 C 1.33986 * 109.95604 * 359.97438 * 9 8 6 12 12 C 1.50706 * 126.04293 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.46808 * 90.00494 * 12 11 9 14 14 H 1.07995 * 120.00464 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99719 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00023 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47039 * 89.99962 * 17 15 13 19 19 H 1.48498 * 109.47462 * 209.99787 * 17 15 13 20 20 H 1.48500 * 109.47285 * 330.00197 * 17 15 13 21 21 H 1.08996 * 109.47255 * 90.00242 * 1 2 3 22 22 H 1.09002 * 109.47372 * 210.00458 * 1 2 3 23 23 H 1.09002 * 109.47029 * 329.99954 * 1 2 3 24 24 H 1.08004 * 119.13195 * 0.27892 * 3 2 1 25 25 H 1.07997 * 120.23107 * 180.02562 * 4 3 2 26 26 H 1.07993 * 120.20119 * 0.03678 * 7 2 1 27 27 H 1.08998 * 109.47128 * 269.99284 * 10 9 8 28 28 H 1.09002 * 109.47390 * 29.99576 * 10 9 8 29 29 H 1.09004 * 109.46756 * 149.99518 * 10 9 8 30 30 H 1.08997 * 109.46748 * 210.00190 * 12 11 9 31 31 H 1.08996 * 109.47244 * 330.00297 * 12 11 9 32 32 H 0.97002 * 119.99659 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2205 0.0000 4 6 3.5413 1.2829 0.0005 5 6 4.2927 0.0884 0.0005 6 6 3.5780 -1.1977 0.0005 7 6 2.1665 -1.1853 0.0005 8 7 4.4981 -2.1449 0.0000 9 7 5.7644 -1.5486 0.0002 10 6 7.0361 -2.2759 0.0002 11 6 5.6416 -0.2144 0.0003 12 6 6.7737 0.7803 0.0000 13 6 7.1505 1.1120 -1.4210 14 1 6.6233 0.6486 -2.2417 15 6 8.1684 2.0072 -1.6732 16 7 8.8102 2.5719 -0.6737 17 14 8.6360 2.4178 -3.4344 18 1 7.8352 3.5780 -3.9015 19 1 10.0806 2.7561 -3.4971 20 1 8.3638 1.2460 -4.3050 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6175 2.1387 0.0046 25 1 4.0416 2.2400 0.0009 26 1 1.6150 -2.1138 0.0003 27 1 7.3514 -2.4563 1.0279 28 1 6.9097 -3.2289 -0.5136 29 1 7.7933 -1.6837 -0.5135 30 1 6.4594 1.6886 0.5141 31 1 7.6343 0.3515 0.5135 32 1 9.5260 3.2019 -0.8512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219907878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = 74.622618 kcal Electronic energy + Delta-G solvation = -15350.626009 eV Core-core repulsion = 12891.031118 eV Total energy + Delta-G solvation = -2459.594891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62045 -37.21716 -33.68463 -32.48406 -31.87809 -29.88675 -28.23648 -26.81763 -25.23215 -23.32426 -21.74037 -20.63655 -18.69980 -16.62121 -16.44373 -15.85154 -14.88362 -14.82049 -14.23458 -13.78031 -13.44743 -13.37354 -12.57889 -12.39837 -12.33165 -12.17399 -11.87213 -11.56636 -11.19003 -11.15626 -10.79322 -10.73332 -10.53691 -10.00161 -9.81159 -9.56136 -9.16685 -8.62487 -7.85113 -6.87177 -6.23802 -4.31533 1.30752 2.44542 3.05051 3.14702 3.20394 3.27498 3.32203 4.27964 4.45122 4.80667 5.10172 5.26459 5.38093 5.45305 5.57871 5.64260 5.80349 5.82073 5.91131 5.97826 6.03576 6.14982 6.21066 6.36093 6.70187 6.99565 7.14596 7.19856 7.22832 7.35850 7.53266 7.61340 7.69657 8.01542 8.39525 8.72642 9.34493 10.84173 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.007683 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.830274 B = 3643.618035 C = 4241.616570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.042 4.042 3 C -0.195 4.195 4 C 0.000 4.000 5 C -0.234 4.234 6 C 0.109 3.891 7 C -0.128 4.128 8 N -0.349 5.349 9 N -0.331 5.331 10 C 0.094 3.906 11 C 0.179 3.821 12 C 0.069 3.931 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.273 1.273 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -4.130 1.772 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.047 4.047 3 C -0.214 4.214 4 C -0.020 4.020 5 C -0.243 4.243 6 C -0.045 4.045 7 C -0.150 4.150 8 N -0.176 5.176 9 N -0.103 5.103 10 C -0.048 4.048 11 C 0.041 3.959 12 C 0.031 3.969 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.198 1.198 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.134 0.866 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.746 -5.455 1.825 9.648 hybrid contribution 0.321 1.051 -0.961 1.460 sum -7.425 -4.404 0.863 8.676 Atomic orbital electron populations 1.20801 0.91839 1.02220 1.01916 1.19255 0.95234 0.92827 0.97351 1.20175 0.93959 0.96593 1.10714 1.20336 0.93094 0.96188 0.92411 1.19316 0.91406 0.94602 1.19015 1.20851 0.94222 0.91219 0.98211 1.19451 0.89140 0.97379 1.08983 1.77525 0.86862 1.18826 1.34339 1.48351 1.06423 1.04533 1.51024 1.21985 0.81595 0.97911 1.03283 1.22475 0.96938 0.85140 0.91389 1.18210 0.88464 0.91241 0.99008 1.20892 1.18030 1.26363 0.90614 0.92246 1.24962 0.95742 0.95418 0.97654 1.69936 1.22984 1.28829 1.30901 0.86462 0.77696 0.79034 0.84160 1.20266 1.20963 1.19757 0.91477 0.91979 0.91769 0.86917 0.85914 0.86626 0.90819 0.89681 0.87771 0.93013 0.94462 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.96 36.01 0.36 -0.93 16 2 C -0.04 -0.68 5.84 -105.01 -0.61 -1.29 16 3 C -0.19 -3.27 9.51 -39.97 -0.38 -3.65 16 4 C 0.00 0.00 10.09 -39.41 -0.40 -0.40 16 5 C -0.23 -5.15 6.26 -105.19 -0.66 -5.81 16 6 C 0.11 2.32 7.49 -83.06 -0.62 1.69 16 7 C -0.13 -2.30 9.65 -39.40 -0.38 -2.68 16 8 N -0.35 -7.61 12.54 33.25 0.42 -7.19 16 9 N -0.33 -6.95 3.95 -63.35 -0.25 -7.20 16 10 C 0.09 1.52 10.97 59.85 0.66 2.18 16 11 C 0.18 4.04 6.17 -81.65 -0.50 3.53 16 12 C 0.07 1.68 4.93 -29.03 -0.14 1.53 16 13 C -0.52 -13.68 9.09 -34.44 -0.31 -13.99 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.41 13.29 55.43 0.74 -23.68 16 17 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.64 8.06 -51.93 -0.42 0.23 16 23 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 24 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 25 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.10 1.74 7.51 -51.93 -0.39 1.35 16 30 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.04 0.90 7.60 -51.93 -0.39 0.51 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 280.08 15.07 4.22 4.22 Total: -1.00 -30.00 280.08 -7.11 -37.11 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.12 Total: -0.58 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -3.09 Total: -18.19 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.90 Total: -38.06 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.00 -7.11 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219907878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.735 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds