Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39680 * 119.09477 * 2 1 4 4 C 1.35655 * 121.73008 * 179.97438 * 3 2 1 5 5 C 1.41123 * 119.53598 * 0.02562 * 4 3 2 6 6 C 1.47136 * 118.76488 * 359.97438 * 5 4 3 7 7 C 1.35642 * 119.09134 * 179.97438 * 2 1 3 8 8 N 1.32054 * 106.76387 * 179.97438 * 6 5 4 9 9 N 1.39961 * 108.95738 * 0.02562 * 8 6 5 10 10 C 1.46501 * 125.01854 * 179.97438 * 9 8 6 11 11 C 1.33986 * 109.95604 * 359.97438 * 9 8 6 12 12 C 1.50706 * 126.04293 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.46808 * 90.00494 * 12 11 9 14 14 H 1.07995 * 120.00464 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99719 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00023 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47039 * 89.99962 * 17 15 13 19 19 H 1.48498 * 109.47462 * 209.99787 * 17 15 13 20 20 H 1.48500 * 109.47285 * 330.00197 * 17 15 13 21 21 H 1.08996 * 109.47255 * 90.00242 * 1 2 3 22 22 H 1.09002 * 109.47372 * 210.00458 * 1 2 3 23 23 H 1.09002 * 109.47029 * 329.99954 * 1 2 3 24 24 H 1.08004 * 119.13195 * 0.27892 * 3 2 1 25 25 H 1.07997 * 120.23107 * 180.02562 * 4 3 2 26 26 H 1.07993 * 120.20119 * 0.03678 * 7 2 1 27 27 H 1.08998 * 109.47128 * 269.99284 * 10 9 8 28 28 H 1.09002 * 109.47390 * 29.99576 * 10 9 8 29 29 H 1.09004 * 109.46756 * 149.99518 * 10 9 8 30 30 H 1.08997 * 109.46748 * 210.00190 * 12 11 9 31 31 H 1.08996 * 109.47244 * 330.00297 * 12 11 9 32 32 H 0.97002 * 119.99659 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2205 0.0000 4 6 3.5413 1.2829 0.0005 5 6 4.2927 0.0884 0.0005 6 6 3.5780 -1.1977 0.0005 7 6 2.1665 -1.1853 0.0005 8 7 4.4981 -2.1449 0.0000 9 7 5.7644 -1.5486 0.0002 10 6 7.0361 -2.2759 0.0002 11 6 5.6416 -0.2144 0.0003 12 6 6.7737 0.7803 0.0000 13 6 7.1505 1.1120 -1.4210 14 1 6.6233 0.6486 -2.2417 15 6 8.1684 2.0072 -1.6732 16 7 8.8102 2.5719 -0.6737 17 14 8.6360 2.4178 -3.4344 18 1 7.8352 3.5780 -3.9015 19 1 10.0806 2.7561 -3.4971 20 1 8.3638 1.2460 -4.3050 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6175 2.1387 0.0046 25 1 4.0416 2.2400 0.0009 26 1 1.6150 -2.1138 0.0003 27 1 7.3514 -2.4563 1.0279 28 1 6.9097 -3.2289 -0.5136 29 1 7.7933 -1.6837 -0.5135 30 1 6.4594 1.6886 0.5141 31 1 7.6343 0.3515 0.5135 32 1 9.5260 3.2019 -0.8512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219907878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = 57.919512 kcal Electronic energy + Delta-G solvation = -15351.350311 eV Core-core repulsion = 12891.031118 eV Total energy + Delta-G solvation = -2460.319192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18059 -38.60810 -35.62049 -33.91678 -33.49197 -31.51659 -29.53767 -28.58299 -26.50908 -25.25571 -23.20385 -22.07114 -20.29548 -18.64673 -17.88914 -17.44237 -16.58985 -16.43581 -15.76282 -15.15433 -14.89464 -14.49060 -14.41502 -14.03972 -13.70976 -13.59197 -13.32783 -12.94146 -12.77678 -12.66617 -12.45127 -12.38392 -11.89260 -11.81148 -11.73971 -11.13203 -10.82631 -10.66149 -9.29658 -8.48709 -8.21079 -6.42116 -0.19118 0.96900 1.39148 1.40322 1.49252 1.55684 1.60381 2.37054 2.97500 3.04147 3.34721 3.81289 4.12246 4.20331 4.26483 4.33388 4.40652 4.53298 4.60510 4.75746 4.79583 4.92862 4.97762 5.13593 5.16425 5.31577 5.44530 5.62101 5.65195 5.79785 5.80796 5.90868 6.10354 6.16394 6.65598 6.79587 7.27392 8.80866 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.007683 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.830274 B = 3643.618035 C = 4241.616570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.035 4.035 3 C -0.173 4.173 4 C -0.036 4.036 5 C -0.254 4.254 6 C 0.088 3.912 7 C -0.142 4.142 8 N -0.363 5.363 9 N -0.333 5.333 10 C 0.087 3.913 11 C 0.148 3.852 12 C 0.086 3.914 13 C -0.531 4.531 14 H 0.046 0.954 15 C 0.022 3.978 16 N -0.918 5.918 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.275 1.275 20 H -0.271 1.271 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.147 0.853 25 H 0.119 0.881 26 H 0.138 0.862 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -4.206 1.140 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.039 4.039 3 C -0.193 4.193 4 C -0.056 4.056 5 C -0.263 4.263 6 C -0.064 4.064 7 C -0.163 4.163 8 N -0.190 5.190 9 N -0.106 5.106 10 C -0.053 4.053 11 C 0.009 3.991 12 C 0.047 3.953 13 C -0.570 4.570 14 H 0.065 0.935 15 C -0.178 4.178 16 N -0.556 5.556 17 Si 0.786 3.214 18 H -0.198 1.198 19 H -0.200 1.200 20 H -0.196 1.196 21 H 0.102 0.898 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.165 0.835 25 H 0.137 0.863 26 H 0.155 0.845 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.686 -5.539 1.197 11.222 hybrid contribution 0.794 1.069 -0.725 1.516 sum -8.892 -4.470 0.472 9.963 Atomic orbital electron populations 1.20889 0.87987 1.04076 1.03461 1.19797 0.97883 0.91619 0.94651 1.20662 0.93024 0.98569 1.07024 1.20498 0.94476 0.95409 0.95224 1.19700 0.91507 0.95997 1.19109 1.21393 0.95666 0.90674 0.98687 1.19857 0.87816 0.99293 1.09371 1.77415 0.87284 1.19396 1.34921 1.48625 1.07306 1.04187 1.50487 1.22254 0.79888 0.98226 1.04972 1.22193 0.96847 0.85761 0.94282 1.17846 0.88776 0.90931 0.97737 1.21030 1.18160 1.26546 0.91237 0.93548 1.25705 0.95529 0.95116 1.01453 1.70023 1.23468 1.29342 1.32797 0.85502 0.77736 0.78718 0.79467 1.19797 1.19994 1.19601 0.89837 0.90401 0.89780 0.83485 0.86338 0.84470 0.88588 0.87490 0.88701 0.95072 0.95333 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.96 71.24 0.71 -1.28 16 2 C -0.04 -1.02 5.84 -20.12 -0.12 -1.13 16 3 C -0.17 -5.43 9.51 22.02 0.21 -5.22 16 4 C -0.04 -1.40 10.09 22.38 0.23 -1.17 16 5 C -0.25 -11.41 6.26 -20.23 -0.13 -11.54 16 6 C 0.09 3.76 7.49 42.16 0.32 4.08 16 7 C -0.14 -4.84 9.65 22.38 0.22 -4.63 16 8 N -0.36 -15.87 12.54 -48.70 -0.61 -16.48 16 9 N -0.33 -14.27 3.95 -354.33 -1.40 -15.67 16 10 C 0.09 2.84 10.97 127.77 1.40 4.24 16 11 C 0.15 6.92 6.17 42.23 0.26 7.18 16 12 C 0.09 4.35 4.93 29.11 0.14 4.49 16 13 C -0.53 -28.79 9.09 25.60 0.23 -28.55 16 14 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 15 C 0.02 1.20 5.46 84.66 0.46 1.66 16 16 N -0.92 -51.24 13.29 21.45 0.28 -50.95 16 17 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 23 H 0.08 1.27 8.07 -2.39 -0.02 1.25 16 24 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 25 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 26 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.09 3.27 7.51 -2.38 -0.02 3.25 16 30 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 1.46 7.60 -2.39 -0.02 1.44 16 32 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -65.29 280.08 5.34 -59.95 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.11 Total: 10.77 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 3.93 Total: -31.88 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.73 Total: -83.10 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -65.29 5.34 -59.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219907878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.871 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds