Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35643 * 120.19366 * 2 1 4 4 C 1.39685 * 121.81036 * 179.97438 * 3 2 1 5 5 C 1.35654 * 121.72644 * 0.05891 * 4 3 2 6 6 C 1.41125 * 119.53689 * 359.92976 * 5 4 3 7 7 C 1.38249 * 134.81632 * 180.02562 * 6 5 4 8 8 C 1.50700 * 126.04433 * 0.04266 * 7 6 5 9 9 C 1.50702 * 109.46869 * 269.99582 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 N 1.33985 * 107.90583 * 180.30053 * 7 6 5 18 18 C 1.46498 * 125.01740 * 179.71557 * 17 7 6 19 19 N 1.39952 * 109.95462 * 359.57517 * 17 7 6 20 20 C 1.32059 * 108.96175 * 0.43513 * 19 17 7 21 21 H 1.08994 * 109.47256 * 270.01948 * 1 2 3 22 22 H 1.08999 * 109.47076 * 30.02624 * 1 2 3 23 23 H 1.09003 * 109.46734 * 150.02451 * 1 2 3 24 24 H 1.07996 * 119.09688 * 359.97438 * 3 2 1 25 25 H 1.07996 * 119.13586 * 180.02562 * 4 3 2 26 26 H 1.08001 * 120.22889 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47210 * 149.99876 * 8 7 6 28 28 H 1.08994 * 109.47551 * 29.99528 * 8 7 6 29 29 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 30 30 H 1.09005 * 109.47346 * 90.00396 * 18 17 7 31 31 H 1.09004 * 109.46931 * 210.00149 * 18 17 7 32 32 H 1.08999 * 109.47629 * 330.00134 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1892 1.1724 0.0000 4 6 3.5855 1.2118 0.0005 5 6 4.3311 0.0786 -0.0001 6 6 3.6878 -1.1775 0.0002 7 6 4.1165 -2.4919 0.0001 8 6 5.5499 -2.9571 0.0007 9 6 6.0282 -3.1120 -1.4200 10 1 5.3611 -2.8949 -2.2411 11 6 7.3195 -3.5249 -1.6715 12 7 8.1319 -3.7890 -0.6715 13 14 7.9147 -3.7096 -3.4324 14 1 6.8163 -3.3537 -4.3661 15 1 9.0708 -2.8060 -3.6614 16 1 8.3306 -5.1153 -3.6696 17 7 3.0321 -3.2788 -0.0062 18 6 3.0565 -4.7436 -0.0143 19 7 1.8729 -2.4947 -0.0007 20 6 2.2172 -1.2198 -0.0004 21 1 -0.3633 0.0003 1.0276 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6377 2.1009 -0.0004 25 1 4.0845 2.1696 0.0009 26 1 5.4095 0.1372 -0.0001 27 1 5.6205 -3.9158 0.5144 28 1 6.1700 -2.2228 0.5148 29 1 9.0403 -4.0798 -0.8485 30 1 3.0606 -5.1126 1.0114 31 1 2.1736 -5.1188 -0.5319 32 1 3.9533 -5.0893 -0.5284 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219907926.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = 58.163935 kcal Electronic energy + Delta-G solvation = -15447.026393 eV Core-core repulsion = 12986.717799 eV Total energy + Delta-G solvation = -2460.308594 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19511 -38.44032 -35.63134 -34.06731 -33.34699 -32.01806 -28.90117 -28.12333 -27.17770 -25.25681 -23.08506 -22.54468 -19.80571 -18.64333 -17.90601 -17.44292 -16.62864 -16.46006 -16.07391 -15.12679 -14.54891 -14.49587 -14.42772 -14.11906 -13.65070 -13.50053 -13.30834 -13.06762 -12.84664 -12.67131 -12.44474 -12.29281 -12.08427 -11.80912 -11.71875 -11.12695 -10.68833 -10.66585 -9.42265 -8.42403 -8.16950 -6.42479 -0.18376 1.00931 1.37532 1.39954 1.49743 1.55788 1.59873 2.36805 2.99743 3.03709 3.36685 3.77400 4.15471 4.21238 4.29665 4.33338 4.43282 4.54532 4.60997 4.69139 4.85419 4.89061 4.98115 5.06107 5.15497 5.28052 5.47011 5.62349 5.70182 5.76424 5.84204 5.91213 6.10860 6.19089 6.65597 6.79593 7.27146 8.80665 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029920 B = 0.007755 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.592258 B = 3609.780755 C = 4084.059240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.106 4.106 3 C -0.073 4.073 4 C -0.169 4.169 5 C -0.049 4.049 6 C -0.248 4.248 7 C 0.143 3.857 8 C 0.087 3.913 9 C -0.530 4.530 10 H 0.046 0.954 11 C 0.022 3.978 12 N -0.918 5.918 13 Si 0.962 3.038 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.272 1.272 17 N -0.333 5.333 18 C 0.087 3.913 19 N -0.354 5.354 20 C 0.087 3.913 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.161 0.839 25 H 0.148 0.852 26 H 0.115 0.885 27 H 0.028 0.972 28 H 0.030 0.970 29 H 0.270 0.730 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 5.434 1.135 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.094 4.094 4 C -0.189 4.189 5 C -0.070 4.070 6 C -0.258 4.258 7 C 0.005 3.995 8 C 0.048 3.952 9 C -0.569 4.569 10 H 0.064 0.936 11 C -0.179 4.179 12 N -0.557 5.557 13 Si 0.786 3.214 14 H -0.198 1.198 15 H -0.200 1.200 16 H -0.197 1.197 17 N -0.106 5.106 18 C -0.053 4.053 19 N -0.181 5.181 20 C -0.066 4.066 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.068 0.932 24 H 0.179 0.821 25 H 0.166 0.834 26 H 0.133 0.867 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.643 4.307 1.186 11.543 hybrid contribution 1.465 -0.066 -0.698 1.624 sum -9.178 4.242 0.488 10.123 Atomic orbital electron populations 1.20605 0.89042 1.02886 1.02503 1.19059 0.96801 0.88660 1.06395 1.20875 0.94043 0.97491 0.97035 1.20755 0.94230 0.97985 1.05893 1.20481 0.99437 0.90528 0.96522 1.19707 0.93963 0.93555 1.18554 1.22167 0.91907 0.90693 0.94755 1.17827 0.83117 0.96578 0.97693 1.21069 0.97730 1.46824 0.91259 0.93569 1.25714 0.96374 0.94298 1.01468 1.70033 1.07308 1.45613 1.32743 0.85444 0.78252 0.78283 0.79381 1.19772 1.19989 1.19676 1.48625 1.03117 1.08408 1.50437 1.22248 1.05715 0.72400 1.04947 1.77391 1.04706 1.01776 1.34224 1.21265 0.93036 0.92921 0.99358 0.90891 0.89037 0.93236 0.82111 0.83419 0.86670 0.95405 0.95194 0.92089 0.88636 0.87456 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 10.03 71.24 0.71 -1.67 16 2 C -0.11 -3.51 5.89 -19.75 -0.12 -3.63 16 3 C -0.07 -2.05 9.53 22.02 0.21 -1.84 16 4 C -0.17 -5.24 9.90 22.02 0.22 -5.02 16 5 C -0.05 -1.94 10.09 22.38 0.23 -1.71 16 6 C -0.25 -11.16 6.26 -20.23 -0.13 -11.29 16 7 C 0.14 6.70 6.17 42.23 0.26 6.96 16 8 C 0.09 4.40 4.92 29.10 0.14 4.54 16 9 C -0.53 -28.83 9.09 25.60 0.23 -28.60 16 10 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 11 C 0.02 1.17 5.46 84.66 0.46 1.63 16 12 N -0.92 -51.42 13.29 21.45 0.28 -51.14 16 13 Si 0.96 42.37 29.54 68.60 2.03 44.39 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 N -0.33 -14.15 3.95 -354.33 -1.40 -15.55 16 18 C 0.09 2.83 10.97 127.77 1.40 4.24 16 19 N -0.35 -15.20 12.54 -48.71 -0.61 -15.81 16 20 C 0.09 3.65 7.19 42.16 0.30 3.96 16 21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 23 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 24 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 25 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 27 H 0.03 1.42 7.62 -2.38 -0.02 1.41 16 28 H 0.03 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.09 3.25 7.52 -2.39 -0.02 3.23 16 Total: -1.00 -65.54 280.24 5.33 -60.20 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.10 Total: 10.34 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 3.93 Total: -32.43 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -1.73 Total: -82.50 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -65.54 5.33 -60.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219907926.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.366 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds