Wall clock time and date at job start Mon Mar 30 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38062 * 119.96648 * 2 1 4 4 C 1.38531 * 120.42087 * 180.02562 * 3 2 1 5 5 C 1.37834 * 120.34356 * 0.25751 * 4 3 2 6 6 C 1.39693 * 119.92300 * 359.44568 * 5 4 3 7 7 C 1.43191 * 120.20953 * 180.29573 * 6 5 4 8 8 N 4.81471 * 134.94685 * 179.97438 * 2 1 3 9 9 C 1.38851 * 119.96453 * 179.97438 * 2 1 3 10 10 N 1.39033 * 120.17056 * 0.04296 * 9 2 1 11 11 C 1.46895 * 111.00066 * 116.04285 * 10 9 2 12 12 C 1.46894 * 111.00020 * 240.00326 * 10 9 2 13 13 C 1.50701 * 109.47268 * 170.00221 * 12 10 9 14 14 H 1.08002 * 119.99948 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99789 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00107 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99764 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46907 * 89.99814 * 17 15 13 19 19 H 1.48498 * 109.47183 * 209.99911 * 17 15 13 20 20 H 1.48501 * 109.46944 * 329.99879 * 17 15 13 21 21 H 1.09000 * 109.47509 * 89.99931 * 1 2 3 22 22 H 1.09000 * 109.47661 * 209.99820 * 1 2 3 23 23 H 1.09005 * 109.47069 * 330.00216 * 1 2 3 24 24 H 1.07995 * 119.78990 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.82336 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.03744 * 179.72433 * 5 4 3 27 27 H 1.09003 * 109.46914 * 59.99956 * 11 10 9 28 28 H 1.08997 * 109.47096 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47726 * 300.00438 * 11 10 9 30 30 H 1.09007 * 109.46661 * 289.99666 * 12 10 9 31 31 H 1.08997 * 109.47422 * 49.99584 * 12 10 9 32 32 H 0.97002 * 119.99525 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.1961 0.0000 4 6 3.5818 1.2070 -0.0005 5 6 4.2875 0.0231 -0.0064 6 6 3.6044 -1.1954 -0.0002 7 6 4.3314 -2.4290 0.0002 8 7 4.9083 -3.4077 0.0015 9 6 2.2004 -1.2029 0.0005 10 7 1.5081 -2.4086 0.0002 11 6 1.7689 -3.1650 -1.2317 12 6 1.8398 -3.2065 1.1881 13 6 0.9002 -4.3809 1.2828 14 1 0.1332 -4.5205 0.5355 15 6 1.0200 -5.2773 2.3236 16 7 1.9544 -5.1077 3.2334 17 14 -0.1450 -6.7328 2.4414 18 1 0.4308 -7.8883 1.7076 19 1 -0.3378 -7.0983 3.8677 20 1 -1.4542 -6.3686 1.8424 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6526 2.1290 -0.0004 25 1 4.1115 2.1483 -0.0009 26 1 5.3674 0.0374 -0.0113 27 1 2.8357 -3.3745 -1.3105 28 1 1.2156 -4.1038 -1.2057 29 1 1.4494 -2.5783 -2.0930 30 1 2.8654 -3.5671 1.1088 31 1 1.7400 -2.5884 2.0804 32 1 2.0388 -5.7386 3.9653 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220977103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:55 Heat of formation + Delta-G solvation = 65.584574 kcal Electronic energy + Delta-G solvation = -15658.142357 eV Core-core repulsion = 13198.155546 eV Total energy + Delta-G solvation = -2459.986810 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.94552 -36.46187 -35.62911 -32.69023 -32.41045 -29.94010 -27.34419 -26.65362 -25.12815 -23.47732 -21.67100 -20.29062 -17.95359 -16.62829 -15.89012 -15.58992 -14.84199 -14.32424 -13.98057 -13.48667 -13.41568 -13.09563 -12.83173 -12.69125 -12.29732 -12.03443 -11.72734 -11.54970 -11.33146 -11.13652 -11.08824 -10.96700 -10.68043 -10.55446 -10.04377 -9.32744 -8.55303 -8.48352 -8.26002 -7.54576 -6.05245 -4.07707 1.06439 1.54695 3.18327 3.30862 3.33411 3.36840 3.40338 4.14764 4.32828 4.38331 4.70966 5.04457 5.07833 5.30473 5.44339 5.54170 5.69824 5.88702 6.01113 6.04436 6.11711 6.13313 6.43843 6.52940 6.57669 6.64280 6.83566 6.96029 7.21520 7.25323 7.75437 7.89611 7.99333 8.08578 8.47520 8.97484 9.55998 11.05438 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.008319 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.143739 B = 3365.048113 C = 3816.715075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.072 4.072 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.065 4.065 7 C 0.256 3.744 8 N -0.411 5.411 9 C 0.162 3.838 10 N -0.510 5.510 11 C 0.037 3.963 12 C 0.187 3.813 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 H 0.065 0.935 22 H 0.089 0.911 23 H 0.056 0.944 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.010 0.990 31 H 0.032 0.968 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 13.200 -7.103 14.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.073 4.073 3 C -0.112 4.112 4 C -0.153 4.153 5 C -0.095 4.095 6 C -0.070 4.070 7 C -0.059 4.059 8 N -0.086 5.086 9 C 0.064 3.936 10 N -0.232 5.232 11 C -0.110 4.110 12 C 0.064 3.936 13 C -0.550 4.550 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 H 0.084 0.916 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.038 0.962 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.519 11.656 -6.906 13.559 hybrid contribution 0.175 -0.681 0.284 0.759 sum 0.694 10.975 -6.622 12.837 Atomic orbital electron populations 1.20653 0.90071 1.03322 1.02102 1.19832 0.96989 0.90846 0.99638 1.21151 0.94107 0.97419 0.98551 1.20906 0.94161 0.97438 1.02810 1.20975 0.99636 0.90726 0.98202 1.16948 0.93321 0.87665 1.09115 1.25372 0.93471 0.92873 0.94182 1.81221 1.09894 1.09380 1.08147 1.19121 0.87731 0.93317 0.93471 1.59762 1.55111 1.03038 1.05250 1.22340 0.99146 0.99029 0.90468 1.20026 0.96351 0.91923 0.85285 1.21056 1.15925 1.07865 1.10136 0.91634 1.24986 0.95743 0.98180 0.95570 1.69965 1.32815 1.37008 1.13458 0.86475 0.81150 0.82465 0.77211 1.20733 1.21186 1.19667 0.91649 0.89266 0.92468 0.85578 0.85545 0.85730 0.96240 0.89756 0.92956 0.97235 0.95029 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.76 36.00 0.35 -1.08 16 2 C -0.07 -1.08 5.89 -104.46 -0.62 -1.70 16 3 C -0.09 -1.11 9.68 -39.54 -0.38 -1.50 16 4 C -0.14 -1.54 10.02 -39.62 -0.40 -1.94 16 5 C -0.07 -1.01 9.75 -39.19 -0.38 -1.40 16 6 C -0.06 -1.14 5.51 -106.62 -0.59 -1.73 16 7 C 0.26 5.25 10.12 -22.48 -0.23 5.03 16 8 N -0.41 -9.33 17.80 41.84 0.74 -8.59 16 9 C 0.16 2.97 4.66 -83.56 -0.39 2.58 16 10 N -0.51 -10.87 3.64 -180.08 -0.66 -11.52 16 11 C 0.04 0.73 9.09 60.06 0.55 1.28 16 12 C 0.19 4.91 4.18 -4.98 -0.02 4.88 16 13 C -0.51 -14.37 8.46 -34.44 -0.29 -14.66 16 14 H 0.07 1.79 7.12 -52.49 -0.37 1.42 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 17 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.09 1.47 7.46 -51.93 -0.39 1.09 16 23 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 24 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 25 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.02 0.40 5.40 -51.93 -0.28 0.12 16 28 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.01 0.28 5.16 -51.93 -0.27 0.01 16 31 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 274.99 15.07 4.14 4.14 Total: -1.00 -31.69 274.99 -6.29 -37.98 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -3.75 Total: -3.83 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.49 Total: -8.68 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.82 Total: -46.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.69 -6.29 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220977103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.564 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds