Wall clock time and date at job start Mon Mar 30 2020 03:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38062 * 119.96648 * 2 1 4 4 C 1.38531 * 120.42087 * 180.02562 * 3 2 1 5 5 C 1.37834 * 120.34356 * 0.25751 * 4 3 2 6 6 C 1.39693 * 119.92300 * 359.44568 * 5 4 3 7 7 C 1.43191 * 120.20953 * 180.29573 * 6 5 4 8 8 N 4.81471 * 134.94685 * 179.97438 * 2 1 3 9 9 C 1.38851 * 119.96453 * 179.97438 * 2 1 3 10 10 N 1.39033 * 120.17056 * 0.04296 * 9 2 1 11 11 C 1.46895 * 111.00066 * 116.04285 * 10 9 2 12 12 C 1.46894 * 111.00020 * 240.00326 * 10 9 2 13 13 C 1.50701 * 109.47268 * 170.00221 * 12 10 9 14 14 H 1.08002 * 119.99948 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99789 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00107 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99764 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46907 * 89.99814 * 17 15 13 19 19 H 1.48498 * 109.47183 * 209.99911 * 17 15 13 20 20 H 1.48501 * 109.46944 * 329.99879 * 17 15 13 21 21 H 1.09000 * 109.47509 * 89.99931 * 1 2 3 22 22 H 1.09000 * 109.47661 * 209.99820 * 1 2 3 23 23 H 1.09005 * 109.47069 * 330.00216 * 1 2 3 24 24 H 1.07995 * 119.78990 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.82336 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.03744 * 179.72433 * 5 4 3 27 27 H 1.09003 * 109.46914 * 59.99956 * 11 10 9 28 28 H 1.08997 * 109.47096 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47726 * 300.00438 * 11 10 9 30 30 H 1.09007 * 109.46661 * 289.99666 * 12 10 9 31 31 H 1.08997 * 109.47422 * 49.99584 * 12 10 9 32 32 H 0.97002 * 119.99525 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.1961 0.0000 4 6 3.5818 1.2070 -0.0005 5 6 4.2875 0.0231 -0.0064 6 6 3.6044 -1.1954 -0.0002 7 6 4.3314 -2.4290 0.0002 8 7 4.9083 -3.4077 0.0015 9 6 2.2004 -1.2029 0.0005 10 7 1.5081 -2.4086 0.0002 11 6 1.7689 -3.1650 -1.2317 12 6 1.8398 -3.2065 1.1881 13 6 0.9002 -4.3809 1.2828 14 1 0.1332 -4.5205 0.5355 15 6 1.0200 -5.2773 2.3236 16 7 1.9544 -5.1077 3.2334 17 14 -0.1450 -6.7328 2.4414 18 1 0.4308 -7.8883 1.7076 19 1 -0.3378 -7.0983 3.8677 20 1 -1.4542 -6.3686 1.8424 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6526 2.1290 -0.0004 25 1 4.1115 2.1483 -0.0009 26 1 5.3674 0.0374 -0.0113 27 1 2.8357 -3.3745 -1.3105 28 1 1.2156 -4.1038 -1.2057 29 1 1.4494 -2.5783 -2.0930 30 1 2.8654 -3.5671 1.1088 31 1 1.7400 -2.5884 2.0804 32 1 2.0388 -5.7386 3.9653 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220977103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:54 Heat of formation + Delta-G solvation = 45.547417 kcal Electronic energy + Delta-G solvation = -15659.011233 eV Core-core repulsion = 13198.155546 eV Total energy + Delta-G solvation = -2460.855687 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26480 -37.89974 -37.25471 -34.74968 -33.62997 -31.27802 -29.31205 -27.87391 -26.68033 -25.06677 -23.21708 -21.64394 -19.26014 -18.65153 -17.30716 -17.01231 -16.70524 -15.63782 -15.53665 -15.16411 -14.83171 -14.63976 -14.19225 -13.95870 -13.88787 -13.80534 -13.24576 -12.95978 -12.87952 -12.76209 -12.54162 -12.44784 -12.24350 -12.17710 -11.97733 -11.39549 -10.68206 -9.71651 -9.44424 -9.27223 -8.25466 -6.36092 -0.15905 0.43160 1.36276 1.38061 1.49763 1.61365 1.97495 2.35360 2.85757 2.97397 3.07168 3.15910 3.93720 4.17363 4.29736 4.43530 4.46275 4.51075 4.68681 4.86321 4.94340 5.01416 5.05428 5.10642 5.14757 5.40198 5.47972 5.52397 5.58398 5.72324 5.95072 6.04176 6.05148 6.45350 6.70806 6.77934 7.32897 8.85571 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.008319 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.143739 B = 3365.048113 C = 3816.715075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.080 4.080 3 C -0.073 4.073 4 C -0.114 4.114 5 C -0.069 4.069 6 C -0.097 4.097 7 C 0.271 3.729 8 N -0.470 5.470 9 C 0.120 3.880 10 N -0.506 5.506 11 C 0.042 3.958 12 C 0.205 3.795 13 C -0.525 4.525 14 H 0.068 0.932 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.278 1.278 19 H -0.280 1.280 20 H -0.258 1.258 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.172 0.828 25 H 0.175 0.825 26 H 0.146 0.854 27 H 0.005 0.995 28 H 0.065 0.935 29 H 0.086 0.914 30 H -0.016 1.016 31 H -0.002 1.002 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 16.158 -7.970 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.081 4.081 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.090 4.090 6 C -0.103 4.103 7 C -0.042 4.042 8 N -0.147 5.147 9 C 0.022 3.978 10 N -0.227 5.227 11 C -0.105 4.105 12 C 0.080 3.920 13 C -0.563 4.563 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.182 1.182 21 H 0.098 0.902 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.189 0.811 25 H 0.193 0.807 26 H 0.164 0.836 27 H 0.023 0.977 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.002 0.998 31 H 0.016 0.984 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.430 14.637 -7.797 16.590 hybrid contribution 0.490 -1.387 0.514 1.558 sum 0.060 13.251 -7.283 15.120 Atomic orbital electron populations 1.20640 0.89310 1.02933 1.02912 1.20104 0.97751 0.90713 0.99568 1.21665 0.94605 0.97652 0.95284 1.21476 0.94127 0.98188 0.99355 1.21332 1.00926 0.89901 0.96858 1.17199 0.93167 0.87839 1.12051 1.26070 0.92509 0.93105 0.92540 1.81185 1.11928 1.10872 1.10699 1.19313 0.88245 0.92972 0.97231 1.59580 1.55846 1.03566 1.03703 1.22310 0.97986 0.98871 0.91347 1.19578 0.94551 0.91475 0.86416 1.21436 1.16095 1.08652 1.10091 0.91409 1.25960 0.97448 1.01300 0.95146 1.70112 1.34785 1.38301 1.14232 0.85356 0.79260 0.78450 0.77420 1.20368 1.20578 1.18162 0.90210 0.93033 0.89429 0.81105 0.80719 0.83623 0.97654 0.91651 0.89543 0.99843 0.98376 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 9.76 71.23 0.70 -1.84 16 2 C -0.08 -2.22 5.89 -19.76 -0.12 -2.34 16 3 C -0.07 -1.37 9.68 22.30 0.22 -1.15 16 4 C -0.11 -1.97 10.02 22.24 0.22 -1.75 16 5 C -0.07 -1.70 9.75 22.53 0.22 -1.48 16 6 C -0.10 -3.42 5.51 -21.16 -0.12 -3.53 16 7 C 0.27 11.65 10.12 88.33 0.89 12.55 16 8 N -0.47 -22.70 17.80 19.00 0.34 -22.36 16 9 C 0.12 4.39 4.66 38.67 0.18 4.57 16 10 N -0.51 -22.26 3.64 -723.64 -2.64 -24.90 16 11 C 0.04 1.71 9.09 127.69 1.16 2.87 16 12 C 0.20 11.31 4.18 85.56 0.36 11.67 16 13 C -0.52 -30.61 8.46 25.60 0.22 -30.40 16 14 H 0.07 3.82 7.12 -2.91 -0.02 3.80 16 15 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 16 N -0.93 -58.85 13.29 21.45 0.28 -58.56 16 17 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.05 1.69 7.46 -2.39 -0.02 1.67 16 23 H 0.09 1.62 8.08 -2.38 -0.02 1.60 16 24 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 25 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 26 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 27 H 0.00 0.22 5.40 -2.39 -0.01 0.21 16 28 H 0.06 2.86 6.76 -2.39 -0.02 2.84 16 29 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 30 H -0.02 -0.96 5.16 -2.38 -0.01 -0.97 16 31 H 0.00 -0.11 8.06 -2.39 -0.02 -0.13 16 32 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -74.46 274.99 5.53 -68.93 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: 1.12 Total: -0.55 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 4.39 Total: -10.40 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -2.01 Total: -105.81 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -74.46 5.53 -68.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220977103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.478 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds