Wall clock time and date at job start Mon Mar 30 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86798 * 120.00091 * 2 1 4 4 H 1.48496 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47009 * 300.00378 * 3 2 1 6 6 H 1.48501 * 109.47051 * 59.99751 * 3 2 1 7 7 C 1.38858 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00040 * 170.67082 * 7 2 1 9 9 N 1.37203 * 120.00083 * 350.67077 * 7 2 1 10 10 C 1.37010 * 125.09116 * 334.81444 * 9 7 2 11 11 C 1.34299 * 109.93016 * 180.02562 * 10 9 7 12 12 C 1.46660 * 107.05214 * 359.97438 * 11 10 9 13 13 C 1.39518 * 133.96666 * 180.02562 * 12 11 10 14 14 C 1.37786 * 119.65250 * 179.97438 * 13 12 11 15 15 C 1.38752 * 120.36303 * 359.97438 * 14 13 12 16 16 C 1.37886 * 120.65036 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.04272 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47415 * 265.52756 * 17 16 15 19 19 N 1.46901 * 109.47094 * 179.97438 * 18 17 16 20 20 C 1.38112 * 125.09288 * 155.12328 * 9 7 2 21 21 H 0.96993 * 120.00133 * 359.97438 * 1 2 3 22 22 H 1.07997 * 125.03122 * 0.05297 * 10 9 7 23 23 H 1.08003 * 126.47403 * 179.97438 * 11 10 9 24 24 H 1.08000 * 120.17767 * 359.97438 * 13 12 11 25 25 H 1.08002 * 119.81613 * 179.97438 * 14 13 12 26 26 H 1.08005 * 119.67381 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.47300 * 145.52633 * 17 16 15 28 28 H 1.09001 * 109.46866 * 25.52797 * 17 16 15 29 29 H 1.09001 * 109.46863 * 60.00225 * 18 17 16 30 30 H 1.08992 * 109.47200 * 299.99679 * 18 17 16 31 31 H 1.00897 * 111.00360 * 56.04743 * 19 18 17 32 32 H 1.00903 * 110.99988 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2125 6 1 1.8896 2.3964 1.2125 7 6 2.0087 -1.2025 -0.0005 8 1 3.0780 -1.2086 -0.1522 9 7 1.3363 -2.3830 0.1916 10 6 0.1445 -2.5117 0.8551 11 6 -0.2380 -3.7990 0.8637 12 6 0.7918 -4.5584 0.1469 13 6 0.9563 -5.9073 -0.1696 14 6 2.0683 -6.3111 -0.8758 15 6 3.0219 -5.3845 -1.2725 16 6 2.8731 -4.0481 -0.9671 17 6 3.9175 -3.0535 -1.4043 18 6 4.9218 -2.8369 -0.2706 19 7 5.9401 -1.8678 -0.6971 20 6 1.7625 -3.6204 -0.2497 21 1 -0.4850 0.8400 0.0004 22 1 -0.4059 -1.6983 1.3042 23 1 -1.1345 -4.1994 1.3135 24 1 0.2158 -6.6311 0.1373 25 1 2.1985 -7.3546 -1.1218 26 1 3.8891 -5.7132 -1.8260 27 1 3.4370 -2.1065 -1.6500 28 1 4.4378 -3.4355 -2.2826 29 1 5.4023 -3.7839 -0.0250 30 1 4.4015 -2.4548 0.6076 31 1 5.5143 -1.0019 -0.9920 32 1 6.6160 -1.7078 0.0349 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229736314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:12 Heat of formation + Delta-G solvation = 47.988309 kcal Electronic energy + Delta-G solvation = -15898.912195 eV Core-core repulsion = 13438.162353 eV Total energy + Delta-G solvation = -2460.749842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12301 -36.38880 -35.10653 -33.08477 -31.53894 -29.29335 -27.68655 -26.86256 -24.58313 -22.11825 -20.70844 -20.47963 -19.49697 -17.46475 -15.83526 -15.41545 -14.91528 -14.67130 -14.55624 -13.95569 -13.73640 -13.25547 -12.88570 -12.18818 -12.10099 -11.76448 -11.55752 -11.34989 -11.32107 -10.93987 -10.70459 -10.57342 -10.49843 -9.99285 -9.74658 -9.22780 -8.44698 -8.34650 -7.04875 -6.88526 -6.55205 -4.31944 2.16938 2.66881 2.96221 2.97533 3.01950 3.75959 4.04573 4.76338 4.83706 4.89856 5.05836 5.61695 5.76996 5.82622 5.89239 6.03061 6.18724 6.32036 6.39838 6.47902 6.59530 6.71454 6.95508 7.07119 7.14784 7.17016 7.18668 7.41884 7.54510 7.59904 7.65608 7.71427 8.03297 8.18569 8.44797 8.98973 9.44156 10.27567 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022024 B = 0.012133 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.012045 B = 2307.197607 C = 3422.889849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.041 3.959 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.346 4.346 8 H 0.112 0.888 9 N -0.290 5.290 10 C 0.088 3.912 11 C -0.284 4.284 12 C -0.119 4.119 13 C -0.087 4.087 14 C -0.170 4.170 15 C -0.135 4.135 16 C -0.072 4.072 17 C -0.079 4.079 18 C 0.067 3.933 19 N -0.853 5.853 20 C 0.061 3.939 21 H 0.278 0.722 22 H 0.165 0.835 23 H 0.122 0.878 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.340 0.660 32 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -2.255 0.400 5.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.167 4.167 3 Si 0.758 3.242 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.473 4.473 8 H 0.130 0.870 9 N 0.047 4.953 10 C -0.047 4.047 11 C -0.309 4.309 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.190 4.190 15 C -0.155 4.155 16 C -0.075 4.075 17 C -0.117 4.117 18 C -0.064 4.064 19 N -0.382 5.382 20 C -0.050 4.050 21 H 0.088 0.912 22 H 0.182 0.818 23 H 0.140 0.860 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.152 0.848 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.031 -2.274 -0.209 5.524 hybrid contribution -0.230 1.404 0.752 1.610 sum 4.800 -0.870 0.543 4.909 Atomic orbital electron populations 1.69905 1.06187 1.28621 1.43695 1.25519 0.95719 1.00416 0.95034 0.85763 0.79545 0.80378 0.78502 1.18916 1.19974 1.19969 1.20061 0.93764 0.81954 1.51514 0.87012 1.40122 1.15913 1.03826 1.35416 1.21937 0.89087 0.96600 0.97045 1.21265 1.02061 0.92895 1.14654 1.19042 0.96338 0.92682 1.04382 1.20248 0.97311 0.93651 0.99402 1.20472 0.96358 0.98007 1.04144 1.20345 0.99516 0.91786 1.03881 1.18596 0.94491 0.93834 1.00531 1.20580 0.94255 0.99503 0.97324 1.21804 0.92082 0.95663 0.96804 1.58831 1.18959 1.16235 1.44174 1.18206 0.97317 0.86420 1.03101 0.91162 0.81793 0.85965 0.87926 0.87870 0.87579 0.89875 0.91691 0.91644 0.94716 0.84832 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.79 11.02 55.49 0.61 -21.17 16 2 C 0.04 1.01 5.36 -17.49 -0.09 0.92 16 3 Si 0.93 18.57 29.56 -169.99 -5.03 13.54 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.35 -8.67 8.63 -14.92 -0.13 -8.80 16 8 H 0.11 2.63 4.09 -52.49 -0.21 2.41 16 9 N -0.29 -7.48 2.91 -59.73 -0.17 -7.65 16 10 C 0.09 2.22 9.85 -16.63 -0.16 2.06 16 11 C -0.28 -6.72 11.08 -37.57 -0.42 -7.14 16 12 C -0.12 -2.82 6.37 -105.09 -0.67 -3.49 16 13 C -0.09 -1.81 10.10 -39.27 -0.40 -2.21 16 14 C -0.17 -3.25 10.03 -39.56 -0.40 -3.64 16 15 C -0.14 -2.65 9.65 -39.52 -0.38 -3.03 16 16 C -0.07 -1.56 5.15 -104.48 -0.54 -2.10 16 17 C -0.08 -1.54 4.91 -27.88 -0.14 -1.67 16 18 C 0.07 1.18 6.12 -3.82 -0.02 1.16 16 19 N -0.85 -13.03 9.62 -10.37 -0.10 -13.13 16 20 C 0.06 1.50 6.70 -83.84 -0.56 0.94 16 21 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 22 H 0.16 4.15 6.56 -52.49 -0.34 3.80 16 23 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 24 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 27 H 0.08 1.77 5.81 -51.93 -0.30 1.47 16 28 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.68 7.09 -51.93 -0.37 0.32 16 31 H 0.34 5.18 8.99 -39.29 -0.35 4.83 16 32 H 0.33 4.36 9.08 -39.29 -0.36 4.00 16 LS Contribution 266.72 15.07 4.02 4.02 Total: -1.00 -27.28 266.72 -8.18 -35.46 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -3.61 Total: 15.95 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -3.91 Total: -27.02 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.34 Total: -41.96 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.28 -8.18 -35.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229736314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.450 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds