Wall clock time and date at job start Mon Mar 30 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37842 * 120.04201 * 2 1 4 4 C 1.38522 * 120.34870 * 180.02562 * 3 2 1 5 5 C 1.38056 * 120.41792 * 359.72831 * 4 3 2 6 6 C 1.38840 * 120.07587 * 0.55528 * 5 4 3 7 7 N 1.39035 * 120.17743 * 179.72348 * 6 5 4 8 8 C 1.46499 * 119.99874 * 359.71973 * 7 6 5 9 9 H 1.09007 * 109.47230 * 34.99882 * 8 7 6 10 10 C 1.53001 * 109.47277 * 275.00342 * 8 7 6 11 11 C 1.50696 * 109.47447 * 155.00202 * 8 7 6 12 12 H 1.08000 * 119.99925 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00616 * 180.02562 * 11 8 7 14 14 N 1.31521 * 119.99448 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00491 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46962 * 89.99654 * 15 13 11 17 17 H 1.48494 * 109.47379 * 209.99874 * 15 13 11 18 18 H 1.48500 * 109.47070 * 330.00219 * 15 13 11 19 19 C 1.39692 * 120.04178 * 180.02562 * 2 1 3 20 20 C 1.43195 * 120.20896 * 359.95977 * 19 2 1 21 21 N 3.48640 * 80.50755 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.46811 * 269.97336 * 1 2 3 23 23 H 1.09000 * 109.46969 * 29.97980 * 1 2 3 24 24 H 1.09005 * 109.46569 * 149.97241 * 1 2 3 25 25 H 1.08008 * 119.82209 * 0.04524 * 3 2 1 26 26 H 1.07999 * 119.78967 * 180.02562 * 4 3 2 27 27 H 1.08003 * 119.96553 * 180.28123 * 5 4 3 28 28 H 0.96999 * 120.00141 * 179.72442 * 7 6 5 29 29 H 1.08995 * 109.46954 * 300.00156 * 10 8 7 30 30 H 1.09005 * 109.47307 * 59.99945 * 10 8 7 31 31 H 1.09000 * 109.47576 * 179.97438 * 10 8 7 32 32 H 0.97001 * 119.99446 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1932 0.0000 4 6 3.5823 1.2007 -0.0005 5 6 4.2876 0.0139 0.0046 6 6 3.6103 -1.1981 -0.0014 7 7 4.3186 -2.3945 -0.0020 8 6 5.7835 -2.3785 -0.0027 9 1 6.1379 -1.5329 0.5869 10 6 6.2915 -2.2467 -1.4399 11 6 6.3002 -3.6608 0.5971 12 1 5.6068 -4.4127 0.9437 13 6 7.6582 -3.8742 0.7034 14 7 8.5027 -2.9583 0.2817 15 14 8.2986 -5.4639 1.4462 16 1 8.4748 -6.4757 0.3735 17 1 9.6040 -5.2108 2.1072 18 1 7.3260 -5.9691 2.4482 19 6 2.2063 -1.2093 -0.0005 20 6 1.4958 -2.4525 -0.0002 21 7 0.9320 -3.4387 0.0015 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5143 25 1 1.6548 2.1273 0.0007 26 1 4.1138 2.1408 -0.0001 27 1 5.3676 0.0282 0.0087 28 1 3.8428 -3.2398 -0.0021 29 1 5.9371 -3.0922 -2.0294 30 1 5.9178 -1.3192 -1.8738 31 1 7.3814 -2.2343 -1.4404 32 1 9.4581 -3.1085 0.3562 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235434368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:37 Heat of formation + Delta-G solvation = 40.515677 kcal Electronic energy + Delta-G solvation = -15221.521369 eV Core-core repulsion = 12760.447490 eV Total energy + Delta-G solvation = -2461.073879 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.47902 -36.12288 -35.89027 -33.13338 -32.00392 -30.39604 -27.71025 -26.78364 -25.32534 -23.06884 -21.76369 -19.70208 -18.40244 -17.09959 -15.82764 -15.58380 -14.75368 -14.34021 -14.16754 -13.65588 -13.36994 -12.89688 -12.73585 -12.50885 -12.46025 -12.23993 -12.09198 -11.65124 -11.32669 -11.10554 -11.06469 -10.93415 -10.67063 -10.35957 -10.21622 -9.52213 -9.14855 -8.59048 -8.42801 -6.81766 -6.25054 -4.33386 1.28349 1.98815 3.07860 3.19351 3.26409 3.29864 3.39899 4.10879 4.31897 4.36082 4.42915 5.02151 5.08379 5.16627 5.52836 5.64878 5.66078 5.82312 5.91464 6.06605 6.26111 6.55299 6.63793 6.72934 6.81830 6.89448 6.92247 7.12315 7.32559 7.57026 7.70599 7.87707 7.95766 8.14578 8.47086 8.74330 9.34198 10.80935 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.006841 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.889859 B = 4092.003904 C = 4666.803077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.010 3.990 3 C -0.207 4.207 4 C -0.038 4.038 5 C -0.207 4.207 6 C 0.288 3.712 7 N -0.707 5.707 8 C 0.262 3.738 9 H 0.048 0.952 10 C -0.154 4.154 11 C -0.534 4.534 12 H 0.061 0.939 13 C 0.069 3.931 14 N -0.885 5.885 15 Si 0.902 3.098 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.273 1.273 19 C -0.151 4.151 20 C 0.273 3.727 21 N -0.454 5.454 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.392 0.608 29 H 0.030 0.970 30 H 0.017 0.983 31 H 0.093 0.907 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 8.682 -1.016 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.007 3.993 3 C -0.228 4.228 4 C -0.057 4.057 5 C -0.230 4.230 6 C 0.171 3.829 7 N -0.325 5.325 8 C 0.160 3.840 9 H 0.065 0.935 10 C -0.213 4.213 11 C -0.573 4.573 12 H 0.079 0.921 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.161 4.161 20 C -0.040 4.040 21 N -0.132 5.132 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.154 0.846 28 H 0.226 0.774 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.111 0.889 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.717 7.127 -1.024 11.307 hybrid contribution 0.551 -0.840 0.356 1.066 sum -8.166 6.288 -0.668 10.328 Atomic orbital electron populations 1.20861 0.91543 1.02688 1.02509 1.19488 0.94967 0.91199 0.93685 1.20467 0.94048 0.96446 1.11816 1.21019 0.93839 0.97401 0.93480 1.20787 1.00797 0.90286 1.11119 1.17935 0.88627 0.88338 0.87975 1.45795 1.08844 1.03983 1.73858 1.18910 0.72754 0.98450 0.93857 0.93464 1.22198 1.04549 0.97191 0.97316 1.21173 0.92096 1.02554 1.41455 0.92118 1.24845 0.96512 0.97115 0.94986 1.69863 1.02752 1.33701 1.45952 0.86422 0.78338 0.82928 0.79359 1.20452 1.20907 1.19808 1.15375 0.90161 0.86878 1.23651 1.25609 0.93128 0.92708 0.92521 1.81183 1.09169 1.10726 1.12092 0.90824 0.90973 0.91978 0.86287 0.86040 0.84592 0.77445 0.95106 0.96427 0.88866 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.61 36.01 0.35 -0.98 16 2 C 0.01 0.13 5.91 -104.22 -0.62 -0.48 16 3 C -0.21 -2.59 9.68 -39.62 -0.38 -2.98 16 4 C -0.04 -0.50 10.03 -39.54 -0.40 -0.90 16 5 C -0.21 -3.44 8.84 -39.43 -0.35 -3.79 16 6 C 0.29 5.24 6.64 -83.56 -0.55 4.68 16 7 N -0.71 -14.60 5.15 -53.07 -0.27 -14.87 16 8 C 0.26 6.12 2.25 -69.08 -0.16 5.97 16 9 H 0.05 1.17 6.46 -51.93 -0.34 0.83 16 10 C -0.15 -3.49 9.21 37.16 0.34 -3.15 16 11 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -23.55 11.32 55.43 0.63 -22.93 16 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C -0.15 -2.50 5.76 -106.62 -0.61 -3.11 16 20 C 0.27 4.85 12.57 -22.48 -0.28 4.56 16 21 N -0.45 -8.64 18.54 41.83 0.78 -7.87 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 24 H 0.06 0.74 7.09 -51.93 -0.37 0.38 16 25 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 26 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 27 H 0.14 2.38 6.12 -52.48 -0.32 2.06 16 28 H 0.39 8.18 7.40 -40.82 -0.30 7.88 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.35 7.73 -51.93 -0.40 -0.05 16 31 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 277.79 15.07 4.19 4.19 Total: -1.00 -26.83 277.79 -6.46 -33.29 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.70 Total: 5.41 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -3.06 Total: -12.67 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 1.13 Total: -45.67 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.83 -6.46 -33.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235434368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.802 kcal (2) G-P(sol) polarization free energy of solvation -26.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds