Wall clock time and date at job start Mon Mar 30 2020 03:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37842 * 120.04201 * 2 1 4 4 C 1.38522 * 120.34870 * 180.02562 * 3 2 1 5 5 C 1.38056 * 120.41792 * 359.72831 * 4 3 2 6 6 C 1.38840 * 120.07587 * 0.55528 * 5 4 3 7 7 N 1.39035 * 120.17743 * 179.72348 * 6 5 4 8 8 C 1.46499 * 119.99874 * 359.71973 * 7 6 5 9 9 H 1.09007 * 109.47230 * 34.99882 * 8 7 6 10 10 C 1.53001 * 109.47277 * 275.00342 * 8 7 6 11 11 C 1.50696 * 109.47447 * 155.00202 * 8 7 6 12 12 H 1.08000 * 119.99925 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00616 * 180.02562 * 11 8 7 14 14 N 1.31521 * 119.99448 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00491 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46962 * 89.99654 * 15 13 11 17 17 H 1.48494 * 109.47379 * 209.99874 * 15 13 11 18 18 H 1.48500 * 109.47070 * 330.00219 * 15 13 11 19 19 C 1.39692 * 120.04178 * 180.02562 * 2 1 3 20 20 C 1.43195 * 120.20896 * 359.95977 * 19 2 1 21 21 N 3.48640 * 80.50755 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.46811 * 269.97336 * 1 2 3 23 23 H 1.09000 * 109.46969 * 29.97980 * 1 2 3 24 24 H 1.09005 * 109.46569 * 149.97241 * 1 2 3 25 25 H 1.08008 * 119.82209 * 0.04524 * 3 2 1 26 26 H 1.07999 * 119.78967 * 180.02562 * 4 3 2 27 27 H 1.08003 * 119.96553 * 180.28123 * 5 4 3 28 28 H 0.96999 * 120.00141 * 179.72442 * 7 6 5 29 29 H 1.08995 * 109.46954 * 300.00156 * 10 8 7 30 30 H 1.09005 * 109.47307 * 59.99945 * 10 8 7 31 31 H 1.09000 * 109.47576 * 179.97438 * 10 8 7 32 32 H 0.97001 * 119.99446 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1932 0.0000 4 6 3.5823 1.2007 -0.0005 5 6 4.2876 0.0139 0.0046 6 6 3.6103 -1.1981 -0.0014 7 7 4.3186 -2.3945 -0.0020 8 6 5.7835 -2.3785 -0.0027 9 1 6.1379 -1.5329 0.5869 10 6 6.2915 -2.2467 -1.4399 11 6 6.3002 -3.6608 0.5971 12 1 5.6068 -4.4127 0.9437 13 6 7.6582 -3.8742 0.7034 14 7 8.5027 -2.9583 0.2817 15 14 8.2986 -5.4639 1.4462 16 1 8.4748 -6.4757 0.3735 17 1 9.6040 -5.2108 2.1072 18 1 7.3260 -5.9691 2.4482 19 6 2.2063 -1.2093 -0.0005 20 6 1.4958 -2.4525 -0.0002 21 7 0.9320 -3.4387 0.0015 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5143 25 1 1.6548 2.1273 0.0007 26 1 4.1138 2.1408 -0.0001 27 1 5.3676 0.0282 0.0087 28 1 3.8428 -3.2398 -0.0021 29 1 5.9371 -3.0922 -2.0294 30 1 5.9178 -1.3192 -1.8738 31 1 7.3814 -2.2343 -1.4404 32 1 9.4581 -3.1085 0.3562 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235434368.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:36 Heat of formation + Delta-G solvation = 26.052034 kcal Electronic energy + Delta-G solvation = -15222.148560 eV Core-core repulsion = 12760.447490 eV Total energy + Delta-G solvation = -2461.701070 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75044 -37.67545 -37.28808 -34.87780 -33.18107 -32.00216 -29.23045 -27.90768 -27.23425 -24.30155 -23.34120 -21.13473 -19.82976 -18.65797 -17.35579 -17.22049 -16.38578 -15.54083 -15.44499 -15.16587 -14.85607 -14.21420 -14.09620 -13.97144 -13.81327 -13.69769 -13.35236 -13.09687 -12.94485 -12.82426 -12.59274 -12.32414 -12.26968 -12.14973 -11.73906 -11.14572 -10.87847 -10.51558 -9.61760 -8.28782 -8.18191 -6.37945 0.06516 0.79036 1.38517 1.40368 1.49627 1.68095 2.07978 2.32968 2.73708 3.05877 3.09945 3.11862 3.91540 4.16773 4.50013 4.58194 4.61781 4.70922 4.83716 4.86749 4.95525 5.01849 5.07261 5.26343 5.37959 5.42242 5.56607 5.65953 5.74979 5.82712 6.03751 6.11881 6.37427 6.58054 6.74684 6.95014 7.33106 8.81744 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.006841 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.889859 B = 4092.003904 C = 4666.803077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.011 3.989 3 C -0.188 4.188 4 C -0.024 4.024 5 C -0.228 4.228 6 C 0.264 3.736 7 N -0.723 5.723 8 C 0.273 3.727 9 H 0.029 0.971 10 C -0.140 4.140 11 C -0.555 4.555 12 H 0.050 0.950 13 C 0.027 3.973 14 N -0.905 5.905 15 Si 0.960 3.040 16 H -0.275 1.275 17 H -0.276 1.276 18 H -0.275 1.275 19 C -0.162 4.162 20 C 0.285 3.715 21 N -0.485 5.485 22 H 0.085 0.915 23 H 0.104 0.896 24 H 0.048 0.952 25 H 0.162 0.838 26 H 0.156 0.844 27 H 0.119 0.881 28 H 0.386 0.614 29 H 0.022 0.978 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 10.691 -0.903 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.008 3.992 3 C -0.208 4.208 4 C -0.043 4.043 5 C -0.250 4.250 6 C 0.151 3.849 7 N -0.343 5.343 8 C 0.170 3.830 9 H 0.047 0.953 10 C -0.199 4.199 11 C -0.593 4.593 12 H 0.068 0.932 13 C -0.174 4.174 14 N -0.543 5.543 15 Si 0.785 3.215 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.200 1.200 19 C -0.171 4.171 20 C -0.027 4.027 21 N -0.163 5.163 22 H 0.104 0.896 23 H 0.122 0.878 24 H 0.067 0.933 25 H 0.180 0.820 26 H 0.174 0.826 27 H 0.137 0.863 28 H 0.218 0.782 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.000 9.176 -0.913 13.603 hybrid contribution 0.840 -1.299 0.321 1.580 sum -9.160 7.877 -0.593 12.096 Atomic orbital electron populations 1.20940 0.89326 1.03639 1.03556 1.19917 0.96599 0.90454 0.92207 1.20970 0.93710 0.97510 1.08611 1.21430 0.94531 0.97405 0.90949 1.20825 1.00277 0.91115 1.12830 1.18185 0.89316 0.87897 0.89545 1.45462 1.07576 1.04716 1.76560 1.18532 0.74565 0.96485 0.93404 0.95309 1.22008 1.02956 0.97690 0.97226 1.21474 0.92448 1.03508 1.41914 0.93158 1.25539 0.96701 0.99822 0.95349 1.69955 1.02948 1.34967 1.46469 0.85533 0.77780 0.79619 0.78556 1.20087 1.20136 1.20030 1.15604 0.89568 0.87516 1.24451 1.25865 0.92481 0.92704 0.91698 1.81174 1.10382 1.11427 1.13338 0.89607 0.87781 0.93302 0.82008 0.82591 0.86327 0.78160 0.95897 0.94653 0.90990 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.61 71.24 0.68 -1.50 16 2 C 0.01 0.27 5.91 -19.61 -0.12 0.16 16 3 C -0.19 -3.81 9.68 22.24 0.22 -3.59 16 4 C -0.02 -0.55 10.03 22.29 0.22 -0.33 16 5 C -0.23 -7.38 8.84 22.37 0.20 -7.18 16 6 C 0.26 9.61 6.64 38.67 0.26 9.87 16 7 N -0.72 -30.91 5.15 -321.83 -1.66 -32.56 16 8 C 0.27 13.23 2.25 44.24 0.10 13.33 16 9 H 0.03 1.50 6.46 -2.38 -0.02 1.48 16 10 C -0.14 -6.53 9.21 71.98 0.66 -5.87 16 11 C -0.56 -29.77 8.73 25.60 0.22 -29.55 16 12 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 13 C 0.03 1.43 5.30 84.65 0.45 1.88 16 14 N -0.91 -49.04 11.32 21.45 0.24 -48.80 16 15 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 C -0.16 -5.22 5.76 -21.16 -0.12 -5.34 16 20 C 0.28 10.11 12.57 88.33 1.11 11.22 16 21 N -0.49 -18.66 18.54 19.00 0.35 -18.31 16 22 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 24 H 0.05 1.06 7.09 -2.38 -0.02 1.04 16 25 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 26 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 27 H 0.12 4.23 6.12 -2.91 -0.02 4.22 16 28 H 0.39 16.88 7.40 -92.71 -0.69 16.19 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.03 1.46 7.73 -2.38 -0.02 1.44 16 31 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 32 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -59.28 277.79 5.30 -53.97 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.45 Total: 18.09 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.88 Total: -16.91 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -1.06 Total: -99.67 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -59.28 5.30 -53.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235434368.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.025 kcal (2) G-P(sol) polarization free energy of solvation -59.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds