Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37975 * 120.07164 * 2 1 4 4 C 1.38345 * 120.14843 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.84417 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47454 * 220.00151 * 5 4 3 7 7 N 1.46897 * 109.47696 * 340.00223 * 5 4 3 8 8 C 1.50700 * 109.47113 * 100.00633 * 5 4 3 9 9 H 1.07993 * 119.99962 * 335.50396 * 8 5 4 10 10 C 1.37879 * 120.00140 * 155.51243 * 8 5 4 11 11 N 1.31518 * 119.99895 * 7.01916 * 10 8 5 12 12 Si 1.86797 * 119.99889 * 187.02700 * 10 8 5 13 13 H 1.48507 * 109.47025 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.47460 * 299.99750 * 12 10 8 15 15 H 1.48499 * 109.47153 * 59.99786 * 12 10 8 16 16 C 1.38379 * 120.30630 * 0.25931 * 4 3 2 17 17 C 1.50703 * 119.92493 * 179.73958 * 16 4 3 18 18 C 1.37930 * 120.15285 * 359.48679 * 16 4 3 19 19 C 1.39605 * 120.08274 * 180.02562 * 2 1 3 20 20 C 1.43204 * 120.14890 * 0.02562 * 19 2 1 21 21 N 3.48498 * 80.49882 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.46627 * 90.00145 * 1 2 3 23 23 H 1.09005 * 109.46420 * 209.99442 * 1 2 3 24 24 H 1.08996 * 109.47644 * 329.99639 * 1 2 3 25 25 H 1.07996 * 119.92443 * 0.02562 * 3 2 1 26 26 H 1.00905 * 110.99840 * 66.87901 * 7 5 4 27 27 H 1.00899 * 111.00679 * 190.83369 * 7 5 4 28 28 H 0.96994 * 120.00085 * 355.36152 * 11 10 8 29 29 H 1.09004 * 109.46715 * 90.00168 * 17 16 4 30 30 H 1.09003 * 109.46995 * 209.99983 * 17 16 4 31 31 H 1.08999 * 109.47171 * 330.00249 * 17 16 4 32 32 H 1.07995 * 120.08205 * 180.24852 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1959 -0.0005 5 6 4.3300 2.5040 -0.0011 6 1 5.1935 2.4285 -0.6620 7 7 3.4433 3.5752 -0.4746 8 6 4.7942 2.8178 1.3978 9 1 4.2736 2.3989 2.2462 10 6 5.8835 3.6398 1.5946 11 7 6.4324 4.2600 0.5730 12 14 6.5798 3.8724 3.3123 13 1 7.7407 4.7968 3.2549 14 1 5.5338 4.4451 4.1972 15 1 7.0190 2.5599 3.8504 16 6 4.2817 0.0022 -0.0065 17 6 5.7887 0.0142 -0.0130 18 6 3.6033 -1.1988 -0.0012 19 6 2.2068 -1.2080 -0.0005 20 6 1.4958 -2.4511 -0.0016 21 7 0.9317 -3.4372 -0.0015 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6583 2.1293 0.0004 26 1 2.6944 3.7409 0.1810 27 1 3.9622 4.4221 -0.6525 28 1 6.1144 4.0875 -0.3269 29 1 6.1564 0.0146 1.0132 30 1 6.1569 -0.8716 -0.5306 31 1 6.1427 0.9084 -0.5261 32 1 4.1507 -2.1297 -0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238508981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = 32.043214 kcal Electronic energy + Delta-G solvation = -15411.084049 eV Core-core repulsion = 12949.642776 eV Total energy + Delta-G solvation = -2461.441273 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.54132 -36.56049 -35.06314 -33.35414 -31.82805 -29.95181 -28.80462 -26.00954 -24.73310 -23.71251 -21.10033 -20.55912 -17.54744 -17.01458 -15.99281 -15.19906 -14.24687 -14.16250 -13.87387 -13.73138 -13.10350 -13.06222 -12.89276 -12.61495 -12.45224 -12.34928 -12.27724 -12.01369 -11.44332 -11.39462 -10.96268 -10.91193 -10.52145 -10.26866 -9.77084 -9.56079 -8.80984 -8.30241 -8.02523 -7.43420 -6.56396 -4.37123 1.24588 1.77727 2.87818 3.28321 3.32161 3.34164 3.51171 4.20230 4.23110 4.37812 5.03874 5.09067 5.16144 5.36861 5.57212 5.69541 5.71103 5.81800 5.93969 6.08260 6.16217 6.27573 6.34294 6.42346 6.69121 6.73130 6.82266 6.87795 7.31290 7.41736 7.71435 7.75653 8.11662 8.33535 8.53072 8.61436 9.34537 10.75772 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.007313 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.274039 B = 3827.728923 C = 4085.366922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.114 4.114 4 C 0.012 3.988 5 C 0.216 3.784 6 H 0.061 0.939 7 N -0.855 5.855 8 C -0.620 4.620 9 H 0.051 0.949 10 C 0.031 3.969 11 N -0.902 5.902 12 Si 1.065 2.935 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.286 1.286 16 C -0.091 4.091 17 C -0.105 4.105 18 C -0.070 4.070 19 C -0.069 4.069 20 C 0.274 3.726 21 N -0.451 5.451 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.132 0.868 26 H 0.324 0.676 27 H 0.333 0.667 28 H 0.270 0.730 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -4.732 -0.848 6.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.050 4.050 3 C -0.132 4.132 4 C 0.011 3.989 5 C 0.108 3.892 6 H 0.078 0.922 7 N -0.383 5.383 8 C -0.660 4.660 9 H 0.069 0.931 10 C -0.175 4.175 11 N -0.537 5.537 12 Si 0.893 3.107 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.212 1.212 16 C -0.092 4.092 17 C -0.161 4.161 18 C -0.091 4.091 19 C -0.073 4.073 20 C -0.040 4.040 21 N -0.127 5.127 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.150 0.850 26 H 0.134 0.866 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.588 -5.929 -0.631 7.523 hybrid contribution -0.620 -0.015 0.136 0.635 sum -5.208 -5.944 -0.495 7.918 Atomic orbital electron populations 1.20823 0.91391 1.02662 1.02401 1.19809 0.95457 0.91735 0.97955 1.20806 0.94046 0.96687 1.01683 1.20468 0.93262 0.96014 0.89184 1.18300 0.90520 0.84922 0.95496 0.92162 1.59580 1.15796 1.11899 1.51005 1.22414 1.17086 1.34480 0.91972 0.93060 1.25850 0.93787 0.92428 1.05445 1.70871 1.44647 1.38080 1.00135 0.83582 0.76528 0.76596 0.74026 1.20694 1.21405 1.21208 1.19619 0.96628 0.91747 1.01193 1.20708 0.90679 1.01921 1.02821 1.20861 0.91521 0.98012 0.98707 1.15716 0.92184 0.86071 1.13295 1.25833 0.92758 0.92719 0.92652 1.81173 1.09329 1.11322 1.10876 0.90983 0.92230 0.90850 0.84992 0.86562 0.85506 0.91801 0.90752 0.92933 0.90743 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.61 36.01 0.35 -1.13 16 2 C -0.05 -0.73 5.91 -104.21 -0.62 -1.35 16 3 C -0.11 -1.98 8.91 -39.64 -0.35 -2.33 16 4 C 0.01 0.24 5.07 -104.53 -0.53 -0.29 16 5 C 0.22 4.72 2.01 -70.02 -0.14 4.58 16 6 H 0.06 1.43 5.28 -51.93 -0.27 1.16 16 7 N -0.86 -17.29 8.51 -6.65 -0.06 -17.35 16 8 C -0.62 -15.11 8.29 -34.44 -0.29 -15.40 16 9 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 10 C 0.03 0.79 5.45 -17.82 -0.10 0.69 16 11 N -0.90 -24.01 13.63 55.43 0.76 -23.25 16 12 Si 1.06 23.02 29.91 -169.99 -5.08 17.94 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 16 C -0.09 -1.63 5.87 -104.68 -0.61 -2.24 16 17 C -0.10 -1.78 9.40 36.01 0.34 -1.45 16 18 C -0.07 -1.11 9.41 -39.17 -0.37 -1.48 16 19 C -0.07 -1.09 5.73 -106.93 -0.61 -1.70 16 20 C 0.27 4.35 13.80 -22.47 -0.31 4.04 16 21 N -0.45 -7.65 18.54 41.84 0.78 -6.87 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.75 7.09 -51.93 -0.37 0.38 16 24 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 25 H 0.13 2.19 6.41 -52.49 -0.34 1.85 16 26 H 0.32 6.25 7.62 -39.29 -0.30 5.95 16 27 H 0.33 7.04 8.44 -39.29 -0.33 6.70 16 28 H 0.27 7.10 6.22 -40.82 -0.25 6.85 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.07 1.40 6.10 -51.93 -0.32 1.08 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 276.84 15.07 4.17 4.17 Total: -1.00 -26.14 276.84 -6.18 -32.32 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -3.49 Total: 11.10 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.24 Total: -18.06 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 1.47 Total: -47.47 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.08 Total: 17.94 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.14 -6.18 -32.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238508981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.362 kcal (2) G-P(sol) polarization free energy of solvation -26.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds