Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37975 * 120.07164 * 2 1 4 4 C 1.38345 * 120.14843 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.84417 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47454 * 220.00151 * 5 4 3 7 7 N 1.46897 * 109.47696 * 340.00223 * 5 4 3 8 8 C 1.50700 * 109.47113 * 100.00633 * 5 4 3 9 9 H 1.07993 * 119.99962 * 335.50396 * 8 5 4 10 10 C 1.37879 * 120.00140 * 155.51243 * 8 5 4 11 11 N 1.31518 * 119.99895 * 7.01916 * 10 8 5 12 12 Si 1.86797 * 119.99889 * 187.02700 * 10 8 5 13 13 H 1.48507 * 109.47025 * 179.97438 * 12 10 8 14 14 H 1.48497 * 109.47460 * 299.99750 * 12 10 8 15 15 H 1.48499 * 109.47153 * 59.99786 * 12 10 8 16 16 C 1.38379 * 120.30630 * 0.25931 * 4 3 2 17 17 C 1.50703 * 119.92493 * 179.73958 * 16 4 3 18 18 C 1.37930 * 120.15285 * 359.48679 * 16 4 3 19 19 C 1.39605 * 120.08274 * 180.02562 * 2 1 3 20 20 C 1.43204 * 120.14890 * 0.02562 * 19 2 1 21 21 N 3.48498 * 80.49882 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.46627 * 90.00145 * 1 2 3 23 23 H 1.09005 * 109.46420 * 209.99442 * 1 2 3 24 24 H 1.08996 * 109.47644 * 329.99639 * 1 2 3 25 25 H 1.07996 * 119.92443 * 0.02562 * 3 2 1 26 26 H 1.00905 * 110.99840 * 66.87901 * 7 5 4 27 27 H 1.00899 * 111.00679 * 190.83369 * 7 5 4 28 28 H 0.96994 * 120.00085 * 355.36152 * 11 10 8 29 29 H 1.09004 * 109.46715 * 90.00168 * 17 16 4 30 30 H 1.09003 * 109.46995 * 209.99983 * 17 16 4 31 31 H 1.08999 * 109.47171 * 330.00249 * 17 16 4 32 32 H 1.07995 * 120.08205 * 180.24852 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1959 -0.0005 5 6 4.3300 2.5040 -0.0011 6 1 5.1935 2.4285 -0.6620 7 7 3.4433 3.5752 -0.4746 8 6 4.7942 2.8178 1.3978 9 1 4.2736 2.3989 2.2462 10 6 5.8835 3.6398 1.5946 11 7 6.4324 4.2600 0.5730 12 14 6.5798 3.8724 3.3123 13 1 7.7407 4.7968 3.2549 14 1 5.5338 4.4451 4.1972 15 1 7.0190 2.5599 3.8504 16 6 4.2817 0.0022 -0.0065 17 6 5.7887 0.0142 -0.0130 18 6 3.6033 -1.1988 -0.0012 19 6 2.2068 -1.2080 -0.0005 20 6 1.4958 -2.4511 -0.0016 21 7 0.9317 -3.4372 -0.0015 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6583 2.1293 0.0004 26 1 2.6944 3.7409 0.1810 27 1 3.9622 4.4221 -0.6525 28 1 6.1144 4.0875 -0.3269 29 1 6.1564 0.0146 1.0132 30 1 6.1569 -0.8716 -0.5306 31 1 6.1427 0.9084 -0.5261 32 1 4.1507 -2.1297 -0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238508981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = 17.528551 kcal Electronic energy + Delta-G solvation = -15411.713452 eV Core-core repulsion = 12949.642776 eV Total energy + Delta-G solvation = -2462.070676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89210 -37.96125 -36.64327 -34.67923 -33.57818 -31.38958 -30.05932 -27.75646 -25.97826 -25.37720 -22.51673 -22.02410 -19.14051 -18.59840 -17.47802 -16.66351 -15.74046 -15.48925 -15.45003 -15.13572 -14.66210 -14.52042 -14.07405 -13.97634 -13.95061 -13.75399 -13.65365 -13.28398 -12.95329 -12.73325 -12.58603 -12.27186 -11.98156 -11.83794 -11.41975 -11.33797 -10.69400 -9.68262 -9.43106 -9.16224 -8.50566 -6.35290 -0.08747 0.47086 1.56276 1.59962 1.60569 1.79888 1.98736 2.55579 2.89872 2.94421 3.18253 3.85504 3.93490 3.95984 4.28787 4.30938 4.50601 4.69390 4.73362 4.76985 4.87106 4.92041 4.95958 5.15185 5.18237 5.36798 5.42254 5.53235 5.84031 5.95404 6.02415 6.14293 6.44199 6.59506 6.61354 6.87781 7.42033 8.77469 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.007313 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.274039 B = 3827.728923 C = 4085.366922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.040 4.040 3 C -0.119 4.119 4 C -0.016 4.016 5 C 0.222 3.778 6 H 0.035 0.965 7 N -0.844 5.844 8 C -0.617 4.617 9 H 0.039 0.961 10 C -0.010 4.010 11 N -0.927 5.927 12 Si 1.103 2.897 13 H -0.288 1.288 14 H -0.277 1.277 15 H -0.274 1.274 16 C -0.106 4.106 17 C -0.100 4.100 18 C -0.061 4.061 19 C -0.066 4.066 20 C 0.290 3.710 21 N -0.465 5.465 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.330 0.670 27 H 0.327 0.673 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -6.009 -0.412 8.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.042 4.042 3 C -0.138 4.138 4 C -0.017 4.017 5 C 0.112 3.888 6 H 0.053 0.947 7 N -0.370 5.370 8 C -0.656 4.656 9 H 0.057 0.943 10 C -0.211 4.211 11 N -0.565 5.565 12 Si 0.926 3.074 13 H -0.213 1.213 14 H -0.202 1.202 15 H -0.200 1.200 16 C -0.106 4.106 17 C -0.156 4.156 18 C -0.081 4.081 19 C -0.070 4.070 20 C -0.023 4.023 21 N -0.141 5.141 22 H 0.105 0.895 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.154 0.846 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.741 -7.220 -0.197 9.227 hybrid contribution -0.347 0.320 -0.035 0.473 sum -6.088 -6.901 -0.231 9.205 Atomic orbital electron populations 1.20889 0.89078 1.03540 1.03624 1.20060 0.97066 0.90876 0.96216 1.20848 0.93259 0.97713 1.01932 1.20397 0.94281 0.95324 0.91735 1.18098 0.90424 0.86681 0.93584 0.94718 1.59534 1.15404 1.11262 1.50845 1.22579 1.16555 1.33552 0.92945 0.94297 1.26876 0.94339 0.92400 1.07495 1.70958 1.45681 1.39638 1.00173 0.83077 0.76046 0.76915 0.71313 1.21343 1.20246 1.19988 1.19729 0.96923 0.92052 1.01911 1.20646 0.90583 1.02180 1.02232 1.21059 0.91683 0.98223 0.97151 1.15796 0.92273 0.86160 1.12755 1.25632 0.92274 0.92307 0.92126 1.81208 1.09845 1.11763 1.11328 0.89473 0.91984 0.89365 0.84568 0.85866 0.86262 0.92695 0.91745 0.89743 0.93359 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 9.61 71.24 0.68 -1.87 16 2 C -0.04 -1.14 5.91 -19.60 -0.12 -1.25 16 3 C -0.12 -3.98 8.91 22.23 0.20 -3.78 16 4 C -0.02 -0.61 5.07 -19.81 -0.10 -0.71 16 5 C 0.22 9.82 2.01 43.42 0.09 9.91 16 6 H 0.04 1.72 5.28 -2.38 -0.01 1.71 16 7 N -0.84 -34.42 8.51 -174.96 -1.49 -35.91 16 8 C -0.62 -30.39 8.29 25.60 0.21 -30.17 16 9 H 0.04 1.98 7.81 -2.91 -0.02 1.96 16 10 C -0.01 -0.50 5.45 84.65 0.46 -0.04 16 11 N -0.93 -50.44 13.63 21.45 0.29 -50.15 16 12 Si 1.10 46.40 29.91 68.60 2.05 48.45 16 13 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 14 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 16 C -0.11 -3.66 5.87 -19.90 -0.12 -3.78 16 17 C -0.10 -3.37 9.40 71.24 0.67 -2.70 16 18 C -0.06 -1.78 9.41 22.54 0.21 -1.56 16 19 C -0.07 -1.91 5.73 -21.36 -0.12 -2.04 16 20 C 0.29 8.35 13.80 88.33 1.22 9.57 16 21 N -0.47 -14.53 18.54 19.01 0.35 -14.18 16 22 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 1.37 7.09 -2.38 -0.02 1.35 16 24 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 25 H 0.14 4.33 6.41 -2.91 -0.02 4.32 16 26 H 0.33 12.67 7.62 -89.69 -0.68 11.99 16 27 H 0.33 14.09 8.44 -89.69 -0.76 13.33 16 28 H 0.26 14.26 6.22 -92.71 -0.58 13.69 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 31 H 0.05 1.87 6.10 -2.39 -0.01 1.85 16 32 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -55.32 276.84 4.41 -50.90 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.08 Total: 29.30 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 3.29 Total: -28.41 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -0.84 Total: -100.24 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.05 Total: 48.45 kcal Total: -55.32 4.41 -50.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238508981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.433 kcal (2) G-P(sol) polarization free energy of solvation -55.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds