Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37965 * 120.07867 * 2 1 4 4 C 1.38349 * 120.14911 * 180.25589 * 3 2 1 5 5 C 1.50700 * 119.84391 * 179.76636 * 4 3 2 6 6 H 1.09004 * 109.47210 * 144.72389 * 5 4 3 7 7 N 1.46899 * 109.47483 * 24.72058 * 5 4 3 8 8 C 1.50702 * 109.46869 * 264.72096 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 5 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 5 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.38382 * 120.30741 * 359.48809 * 4 3 2 17 17 C 1.50697 * 119.92301 * 180.25735 * 16 4 3 18 18 C 1.37921 * 120.14879 * 0.23043 * 16 4 3 19 19 C 1.39613 * 120.07595 * 179.72264 * 2 1 3 20 20 C 1.43206 * 120.14977 * 359.97438 * 19 2 1 21 21 N 3.48500 * 80.49442 * 179.70822 * 2 1 3 22 22 H 1.09002 * 109.47123 * 270.27551 * 1 2 3 23 23 H 1.08999 * 109.46792 * 30.27411 * 1 2 3 24 24 H 1.08999 * 109.46952 * 150.27593 * 1 2 3 25 25 H 1.07997 * 119.92533 * 0.02562 * 3 2 1 26 26 H 1.00903 * 111.00048 * 300.00270 * 7 5 4 27 27 H 1.00904 * 110.99882 * 63.95460 * 7 5 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.08997 * 109.47536 * 89.99953 * 17 16 4 30 30 H 1.09001 * 109.46766 * 209.99819 * 17 16 4 31 31 H 1.08997 * 109.47187 * 329.99396 * 17 16 4 32 32 H 1.08007 * 120.07555 * 179.97438 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 -0.0053 5 6 4.3303 2.5036 -0.0106 6 1 5.2412 2.4035 0.5795 7 7 3.4837 3.5545 0.5699 8 6 4.6877 2.8721 -1.4275 9 1 4.4012 2.2241 -2.2427 10 6 5.3750 4.0396 -1.6838 11 7 5.7234 4.8289 -0.6912 12 14 5.8112 4.5001 -3.4407 13 1 4.7135 5.3101 -4.0274 14 1 7.0680 5.2911 -3.4476 15 1 5.9991 3.2654 -4.2441 16 6 4.2818 0.0018 0.0000 17 6 5.7887 0.0138 -0.0001 18 6 3.6032 -1.1990 0.0058 19 6 2.2067 -1.2081 0.0058 20 6 1.4955 -2.4511 0.0124 21 7 0.9315 -3.4371 0.0175 22 1 -0.3633 0.0049 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8924 -0.5095 25 1 1.6585 2.1292 0.0004 26 1 2.6323 3.6667 0.0402 27 1 3.2834 3.3626 1.5400 28 1 6.2073 5.6501 -0.8715 29 1 6.1521 0.0212 1.0275 30 1 6.1590 -0.8756 -0.5099 31 1 6.1449 0.9042 -0.5179 32 1 4.1506 -2.1300 0.0095 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238520341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = 42.189167 kcal Electronic energy + Delta-G solvation = -15360.879277 eV Core-core repulsion = 12899.877966 eV Total energy + Delta-G solvation = -2461.001311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59771 -36.55326 -34.74546 -33.34454 -31.82585 -29.83256 -28.78752 -26.32937 -24.76037 -23.78499 -21.02607 -20.37464 -17.47490 -16.53628 -15.73207 -15.07873 -14.43083 -14.18991 -14.14452 -13.84552 -13.03078 -12.95233 -12.93292 -12.82113 -12.47323 -12.36039 -12.18654 -11.56615 -11.51678 -11.26907 -10.92776 -10.86489 -10.62441 -10.48326 -9.83914 -9.36488 -8.52956 -8.36443 -7.92311 -7.20237 -5.96694 -4.12645 1.19588 1.70551 2.84203 3.24983 3.29160 3.36781 3.40135 4.15575 4.18436 4.43713 4.99018 5.06900 5.27932 5.37588 5.55333 5.65427 5.74767 5.83133 5.93622 6.01658 6.17851 6.22328 6.29501 6.38487 6.63325 6.76439 6.79496 7.06821 7.32454 7.39306 7.67624 7.81863 8.06379 8.52706 8.89534 9.04580 9.56775 11.07102 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.007131 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.201016 B = 3925.307882 C = 4106.124368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.041 4.041 3 C -0.132 4.132 4 C -0.035 4.035 5 C 0.249 3.751 6 H 0.057 0.943 7 N -0.812 5.812 8 C -0.531 4.531 9 H 0.055 0.945 10 C 0.086 3.914 11 N -0.844 5.844 12 Si 0.884 3.116 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.089 4.089 17 C -0.118 4.118 18 C -0.069 4.069 19 C -0.069 4.069 20 C 0.273 3.727 21 N -0.449 5.449 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.127 0.873 26 H 0.319 0.681 27 H 0.300 0.700 28 H 0.257 0.743 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -6.234 2.309 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.044 4.044 3 C -0.150 4.150 4 C -0.038 4.038 5 C 0.140 3.860 6 H 0.075 0.925 7 N -0.338 5.338 8 C -0.570 4.570 9 H 0.073 0.927 10 C -0.121 4.121 11 N -0.478 5.478 12 Si 0.711 3.289 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.090 4.090 17 C -0.175 4.175 18 C -0.090 4.090 19 C -0.073 4.073 20 C -0.041 4.041 21 N -0.125 5.125 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.287 -7.069 2.219 8.559 hybrid contribution -0.321 -0.137 -0.901 0.967 sum -4.608 -7.206 1.317 8.654 Atomic orbital electron populations 1.20843 0.91367 1.02830 1.02413 1.19774 0.95428 0.91714 0.97492 1.20823 0.94214 0.96769 1.03217 1.22025 0.93914 0.99061 0.88801 1.18369 0.91123 0.79936 0.96621 0.92496 1.59161 1.21417 1.50151 1.03082 1.20737 1.38545 1.07224 0.90466 0.92678 1.24927 0.94873 0.96069 0.96262 1.70095 1.36008 1.11463 1.30222 0.86756 0.77893 0.78599 0.85617 1.20699 1.21258 1.19937 1.19716 0.96775 0.91689 1.00806 1.20865 0.90616 1.04005 1.01983 1.20962 0.91528 0.98251 0.98269 1.15729 0.92229 0.86057 1.13253 1.25829 0.92799 0.92742 0.92709 1.81176 1.09275 1.11312 1.10781 0.90969 0.90755 0.92133 0.85488 0.86799 0.88949 0.93308 0.91869 0.92587 0.88435 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.61 36.01 0.35 -1.09 16 2 C -0.04 -0.62 5.91 -104.21 -0.62 -1.23 16 3 C -0.13 -2.17 8.91 -39.64 -0.35 -2.52 16 4 C -0.03 -0.64 4.99 -104.53 -0.52 -1.16 16 5 C 0.25 5.46 2.17 -70.02 -0.15 5.31 16 6 H 0.06 1.36 6.98 -51.93 -0.36 1.00 16 7 N -0.81 -17.11 8.11 -6.65 -0.05 -17.17 16 8 C -0.53 -13.21 7.92 -34.44 -0.27 -13.48 16 9 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 10 C 0.09 2.23 5.39 -17.82 -0.10 2.13 16 11 N -0.84 -22.91 12.76 55.43 0.71 -22.20 16 12 Si 0.88 20.15 29.54 -169.99 -5.02 15.13 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 C -0.09 -1.51 5.87 -104.69 -0.61 -2.12 16 17 C -0.12 -1.87 9.20 36.00 0.33 -1.54 16 18 C -0.07 -1.05 9.41 -39.17 -0.37 -1.42 16 19 C -0.07 -1.05 5.73 -106.93 -0.61 -1.66 16 20 C 0.27 4.21 13.80 -22.47 -0.31 3.90 16 21 N -0.45 -7.47 18.54 41.83 0.78 -6.69 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 24 H 0.06 0.75 7.09 -51.93 -0.37 0.38 16 25 H 0.13 1.97 6.26 -52.49 -0.33 1.64 16 26 H 0.32 6.37 7.19 -39.29 -0.28 6.09 16 27 H 0.30 5.60 9.06 -39.29 -0.36 5.25 16 28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.10 1.81 6.13 -51.93 -0.32 1.49 16 32 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -27.36 278.46 -6.30 -33.66 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.67 Total: 7.99 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -3.24 Total: -14.90 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 1.43 Total: -46.07 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.36 -6.30 -33.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.846 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds