Wall clock time and date at job start Mon Mar 30 2020 03:20:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.37965 * 120.07867 * 2 1
4 4 C 1.38349 * 120.14911 * 180.25589 * 3 2 1
5 5 C 1.50700 * 119.84391 * 179.76636 * 4 3 2
6 6 H 1.09004 * 109.47210 * 144.72389 * 5 4 3
7 7 N 1.46899 * 109.47483 * 24.72058 * 5 4 3
8 8 C 1.50702 * 109.46869 * 264.72096 * 5 4 3
9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4
10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4
11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 5
12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 5
13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8
14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8
15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8
16 16 C 1.38382 * 120.30741 * 359.48809 * 4 3 2
17 17 C 1.50697 * 119.92301 * 180.25735 * 16 4 3
18 18 C 1.37921 * 120.14879 * 0.23043 * 16 4 3
19 19 C 1.39613 * 120.07595 * 179.72264 * 2 1 3
20 20 C 1.43206 * 120.14977 * 359.97438 * 19 2 1
21 21 N 3.48500 * 80.49442 * 179.70822 * 2 1 3
22 22 H 1.09002 * 109.47123 * 270.27551 * 1 2 3
23 23 H 1.08999 * 109.46792 * 30.27411 * 1 2 3
24 24 H 1.08999 * 109.46952 * 150.27593 * 1 2 3
25 25 H 1.07997 * 119.92533 * 0.02562 * 3 2 1
26 26 H 1.00903 * 111.00048 * 300.00270 * 7 5 4
27 27 H 1.00904 * 110.99882 * 63.95460 * 7 5 4
28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8
29 29 H 1.08997 * 109.47536 * 89.99953 * 17 16 4
30 30 H 1.09001 * 109.46766 * 209.99819 * 17 16 4
31 31 H 1.08997 * 109.47187 * 329.99396 * 17 16 4
32 32 H 1.08007 * 120.07555 * 179.97438 * 18 16 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1985 1.1939 0.0000
4 6 3.5819 1.1956 -0.0053
5 6 4.3303 2.5036 -0.0106
6 1 5.2412 2.4035 0.5795
7 7 3.4837 3.5545 0.5699
8 6 4.6877 2.8721 -1.4275
9 1 4.4012 2.2241 -2.2427
10 6 5.3750 4.0396 -1.6838
11 7 5.7234 4.8289 -0.6912
12 14 5.8112 4.5001 -3.4407
13 1 4.7135 5.3101 -4.0274
14 1 7.0680 5.2911 -3.4476
15 1 5.9991 3.2654 -4.2441
16 6 4.2818 0.0018 0.0000
17 6 5.7887 0.0138 -0.0001
18 6 3.6032 -1.1990 0.0058
19 6 2.2067 -1.2081 0.0058
20 6 1.4955 -2.4511 0.0124
21 7 0.9315 -3.4371 0.0175
22 1 -0.3633 0.0049 1.0277
23 1 -0.3633 0.8875 -0.5181
24 1 -0.3633 -0.8924 -0.5095
25 1 1.6585 2.1292 0.0004
26 1 2.6323 3.6667 0.0402
27 1 3.2834 3.3626 1.5400
28 1 6.2073 5.6501 -0.8715
29 1 6.1521 0.0212 1.0275
30 1 6.1590 -0.8756 -0.5099
31 1 6.1449 0.9042 -0.5179
32 1 4.1506 -2.1300 0.0095
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238520341.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:08
Heat of formation + Delta-G solvation = 42.189167 kcal
Electronic energy + Delta-G solvation = -15360.879277 eV
Core-core repulsion = 12899.877966 eV
Total energy + Delta-G solvation = -2461.001311 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.59771 -36.55326 -34.74546 -33.34454 -31.82585 -29.83256 -28.78752 -26.32937
-24.76037 -23.78499 -21.02607 -20.37464 -17.47490 -16.53628 -15.73207 -15.07873
-14.43083 -14.18991 -14.14452 -13.84552 -13.03078 -12.95233 -12.93292 -12.82113
-12.47323 -12.36039 -12.18654 -11.56615 -11.51678 -11.26907 -10.92776 -10.86489
-10.62441 -10.48326 -9.83914 -9.36488 -8.52956 -8.36443 -7.92311 -7.20237
-5.96694 -4.12645 1.19588 1.70551 2.84203 3.24983 3.29160 3.36781
3.40135 4.15575 4.18436 4.43713 4.99018 5.06900 5.27932 5.37588
5.55333 5.65427 5.74767 5.83133 5.93622 6.01658 6.17851 6.22328
6.29501 6.38487 6.63325 6.76439 6.79496 7.06821 7.32454 7.39306
7.67624 7.81863 8.06379 8.52706 8.89534 9.04580 9.56775 11.07102
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.033317 B = 0.007131 C = 0.006817
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 840.201016 B = 3925.307882 C = 4106.124368
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.041 4.041
3 C -0.132 4.132
4 C -0.035 4.035
5 C 0.249 3.751
6 H 0.057 0.943
7 N -0.812 5.812
8 C -0.531 4.531
9 H 0.055 0.945
10 C 0.086 3.914
11 N -0.844 5.844
12 Si 0.884 3.116
13 H -0.281 1.281
14 H -0.287 1.287
15 H -0.274 1.274
16 C -0.089 4.089
17 C -0.118 4.118
18 C -0.069 4.069
19 C -0.069 4.069
20 C 0.273 3.727
21 N -0.449 5.449
22 H 0.072 0.928
23 H 0.074 0.926
24 H 0.060 0.940
25 H 0.127 0.873
26 H 0.319 0.681
27 H 0.300 0.700
28 H 0.257 0.743
29 H 0.063 0.937
30 H 0.055 0.945
31 H 0.097 0.903
32 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.125 -6.234 2.309 7.824
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.044 4.044
3 C -0.150 4.150
4 C -0.038 4.038
5 C 0.140 3.860
6 H 0.075 0.925
7 N -0.338 5.338
8 C -0.570 4.570
9 H 0.073 0.927
10 C -0.121 4.121
11 N -0.478 5.478
12 Si 0.711 3.289
13 H -0.207 1.207
14 H -0.213 1.213
15 H -0.199 1.199
16 C -0.090 4.090
17 C -0.175 4.175
18 C -0.090 4.090
19 C -0.073 4.073
20 C -0.041 4.041
21 N -0.125 5.125
22 H 0.090 0.910
23 H 0.092 0.908
24 H 0.079 0.921
25 H 0.145 0.855
26 H 0.132 0.868
27 H 0.111 0.889
28 H 0.067 0.933
29 H 0.081 0.919
30 H 0.074 0.926
31 H 0.116 0.884
32 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -4.287 -7.069 2.219 8.559
hybrid contribution -0.321 -0.137 -0.901 0.967
sum -4.608 -7.206 1.317 8.654
Atomic orbital electron populations
1.20843 0.91367 1.02830 1.02413 1.19774 0.95428 0.91714 0.97492
1.20823 0.94214 0.96769 1.03217 1.22025 0.93914 0.99061 0.88801
1.18369 0.91123 0.79936 0.96621 0.92496 1.59161 1.21417 1.50151
1.03082 1.20737 1.38545 1.07224 0.90466 0.92678 1.24927 0.94873
0.96069 0.96262 1.70095 1.36008 1.11463 1.30222 0.86756 0.77893
0.78599 0.85617 1.20699 1.21258 1.19937 1.19716 0.96775 0.91689
1.00806 1.20865 0.90616 1.04005 1.01983 1.20962 0.91528 0.98251
0.98269 1.15729 0.92229 0.86057 1.13253 1.25829 0.92799 0.92742
0.92709 1.81176 1.09275 1.11312 1.10781 0.90969 0.90755 0.92133
0.85488 0.86799 0.88949 0.93308 0.91869 0.92587 0.88435 0.85984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.44 9.61 36.01 0.35 -1.09 16
2 C -0.04 -0.62 5.91 -104.21 -0.62 -1.23 16
3 C -0.13 -2.17 8.91 -39.64 -0.35 -2.52 16
4 C -0.03 -0.64 4.99 -104.53 -0.52 -1.16 16
5 C 0.25 5.46 2.17 -70.02 -0.15 5.31 16
6 H 0.06 1.36 6.98 -51.93 -0.36 1.00 16
7 N -0.81 -17.11 8.11 -6.65 -0.05 -17.17 16
8 C -0.53 -13.21 7.92 -34.44 -0.27 -13.48 16
9 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16
10 C 0.09 2.23 5.39 -17.82 -0.10 2.13 16
11 N -0.84 -22.91 12.76 55.43 0.71 -22.20 16
12 Si 0.88 20.15 29.54 -169.99 -5.02 15.13 16
13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
16 C -0.09 -1.51 5.87 -104.69 -0.61 -2.12 16
17 C -0.12 -1.87 9.20 36.00 0.33 -1.54 16
18 C -0.07 -1.05 9.41 -39.17 -0.37 -1.42 16
19 C -0.07 -1.05 5.73 -106.93 -0.61 -1.66 16
20 C 0.27 4.21 13.80 -22.47 -0.31 3.90 16
21 N -0.45 -7.47 18.54 41.83 0.78 -6.69 16
22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16
24 H 0.06 0.75 7.09 -51.93 -0.37 0.38 16
25 H 0.13 1.97 6.26 -52.49 -0.33 1.64 16
26 H 0.32 6.37 7.19 -39.29 -0.28 6.09 16
27 H 0.30 5.60 9.06 -39.29 -0.36 5.25 16
28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16
29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
30 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16
31 H 0.10 1.81 6.13 -51.93 -0.32 1.49 16
32 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16
LS Contribution 278.46 15.07 4.20 4.20
Total: -1.00 -27.36 278.46 -6.30 -33.66
By element:
Atomic # 1 Polarization: 11.65 SS G_CDS: -3.67 Total: 7.99 kcal
Atomic # 6 Polarization: -11.66 SS G_CDS: -3.24 Total: -14.90 kcal
Atomic # 7 Polarization: -47.49 SS G_CDS: 1.43 Total: -46.07 kcal
Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -27.36 -6.30 -33.66 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238520341.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.846 kcal
(2) G-P(sol) polarization free energy of solvation -27.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.490 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.657 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds