Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37965 * 120.07867 * 2 1 4 4 C 1.38349 * 120.14911 * 180.25589 * 3 2 1 5 5 C 1.50700 * 119.84391 * 179.76636 * 4 3 2 6 6 H 1.09004 * 109.47210 * 144.72389 * 5 4 3 7 7 N 1.46899 * 109.47483 * 24.72058 * 5 4 3 8 8 C 1.50702 * 109.46869 * 264.72096 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 5 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 5 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.38382 * 120.30741 * 359.48809 * 4 3 2 17 17 C 1.50697 * 119.92301 * 180.25735 * 16 4 3 18 18 C 1.37921 * 120.14879 * 0.23043 * 16 4 3 19 19 C 1.39613 * 120.07595 * 179.72264 * 2 1 3 20 20 C 1.43206 * 120.14977 * 359.97438 * 19 2 1 21 21 N 3.48500 * 80.49442 * 179.70822 * 2 1 3 22 22 H 1.09002 * 109.47123 * 270.27551 * 1 2 3 23 23 H 1.08999 * 109.46792 * 30.27411 * 1 2 3 24 24 H 1.08999 * 109.46952 * 150.27593 * 1 2 3 25 25 H 1.07997 * 119.92533 * 0.02562 * 3 2 1 26 26 H 1.00903 * 111.00048 * 300.00270 * 7 5 4 27 27 H 1.00904 * 110.99882 * 63.95460 * 7 5 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.08997 * 109.47536 * 89.99953 * 17 16 4 30 30 H 1.09001 * 109.46766 * 209.99819 * 17 16 4 31 31 H 1.08997 * 109.47187 * 329.99396 * 17 16 4 32 32 H 1.08007 * 120.07555 * 179.97438 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 -0.0053 5 6 4.3303 2.5036 -0.0106 6 1 5.2412 2.4035 0.5795 7 7 3.4837 3.5545 0.5699 8 6 4.6877 2.8721 -1.4275 9 1 4.4012 2.2241 -2.2427 10 6 5.3750 4.0396 -1.6838 11 7 5.7234 4.8289 -0.6912 12 14 5.8112 4.5001 -3.4407 13 1 4.7135 5.3101 -4.0274 14 1 7.0680 5.2911 -3.4476 15 1 5.9991 3.2654 -4.2441 16 6 4.2818 0.0018 0.0000 17 6 5.7887 0.0138 -0.0001 18 6 3.6032 -1.1990 0.0058 19 6 2.2067 -1.2081 0.0058 20 6 1.4955 -2.4511 0.0124 21 7 0.9315 -3.4371 0.0175 22 1 -0.3633 0.0049 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8924 -0.5095 25 1 1.6585 2.1292 0.0004 26 1 2.6323 3.6667 0.0402 27 1 3.2834 3.3626 1.5400 28 1 6.2073 5.6501 -0.8715 29 1 6.1521 0.0212 1.0275 30 1 6.1590 -0.8756 -0.5099 31 1 6.1449 0.9042 -0.5179 32 1 4.1506 -2.1300 0.0095 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238520341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = 26.433554 kcal Electronic energy + Delta-G solvation = -15361.562492 eV Core-core repulsion = 12899.877966 eV Total energy + Delta-G solvation = -2461.684526 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.89059 -37.88633 -36.28120 -34.62762 -33.64805 -31.20891 -29.99321 -28.13117 -25.93716 -25.36571 -22.34406 -21.86465 -18.76822 -18.40379 -17.05185 -16.71985 -16.05148 -15.72237 -15.38282 -15.18255 -14.46951 -14.26675 -14.17210 -14.02344 -13.84932 -13.67769 -13.45402 -13.16189 -12.87256 -12.71174 -12.64752 -12.31032 -12.23865 -11.80642 -11.52405 -11.17848 -10.49731 -9.66299 -9.26121 -8.83458 -7.92611 -6.12453 -0.08475 0.46735 1.46713 1.50173 1.57256 1.60903 1.98427 2.51792 2.90269 2.94795 3.31818 3.86324 3.91875 4.15171 4.32497 4.43821 4.58094 4.68585 4.73914 4.77430 4.89006 4.98353 5.04801 5.19035 5.30837 5.43195 5.48298 5.62250 5.82989 5.88389 6.01492 6.24694 6.44686 6.73192 7.18504 7.34327 7.59536 9.10086 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.007131 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.201016 B = 3925.307882 C = 4106.124368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.036 4.036 3 C -0.134 4.134 4 C -0.057 4.057 5 C 0.257 3.743 6 H 0.029 0.971 7 N -0.824 5.824 8 C -0.532 4.532 9 H 0.045 0.955 10 C 0.042 3.958 11 N -0.876 5.876 12 Si 0.938 3.062 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.272 1.272 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.061 4.061 19 C -0.067 4.067 20 C 0.289 3.711 21 N -0.466 5.466 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.133 0.867 26 H 0.325 0.675 27 H 0.314 0.686 28 H 0.254 0.746 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 -7.476 2.067 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.038 4.038 3 C -0.152 4.152 4 C -0.060 4.060 5 C 0.147 3.853 6 H 0.046 0.954 7 N -0.352 5.352 8 C -0.571 4.571 9 H 0.064 0.936 10 C -0.162 4.162 11 N -0.512 5.512 12 Si 0.765 3.235 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.196 1.196 16 C -0.102 4.102 17 C -0.170 4.170 18 C -0.081 4.081 19 C -0.071 4.071 20 C -0.024 4.024 21 N -0.143 5.143 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.079 0.921 25 H 0.151 0.849 26 H 0.138 0.862 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.298 -8.323 1.970 10.060 hybrid contribution -0.054 0.171 -0.794 0.814 sum -5.352 -8.151 1.176 9.822 Atomic orbital electron populations 1.20903 0.89211 1.03515 1.03671 1.20007 0.96933 0.90902 0.95985 1.20860 0.93403 0.97759 1.03207 1.21718 0.94785 0.98005 0.91513 1.17974 0.90811 0.81966 0.94567 0.95370 1.58969 1.21700 1.50479 1.04071 1.20991 1.37577 1.06611 0.91878 0.93637 1.25540 0.95178 0.96362 0.99146 1.70205 1.37386 1.11883 1.31754 0.85902 0.77410 0.78154 0.82066 1.20696 1.21299 1.19648 1.19830 0.97229 0.91871 1.01244 1.20801 0.90282 1.03436 1.02517 1.21141 0.91618 0.98499 0.96872 1.15820 0.92370 0.86087 1.12799 1.25671 0.92275 0.92356 0.92122 1.81208 1.09867 1.11839 1.11342 0.89340 0.89427 0.92091 0.84885 0.86165 0.87470 0.93661 0.90835 0.90160 0.91840 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.61 71.24 0.68 -1.81 16 2 C -0.04 -0.98 5.91 -19.60 -0.12 -1.09 16 3 C -0.13 -4.22 8.91 22.23 0.20 -4.02 16 4 C -0.06 -2.08 4.99 -19.80 -0.10 -2.18 16 5 C 0.26 11.41 2.17 43.42 0.09 11.50 16 6 H 0.03 1.41 6.98 -2.38 -0.02 1.39 16 7 N -0.82 -34.93 8.11 -174.95 -1.42 -36.35 16 8 C -0.53 -26.78 7.92 25.60 0.20 -26.58 16 9 H 0.05 2.33 7.74 -2.91 -0.02 2.30 16 10 C 0.04 2.18 5.39 84.66 0.46 2.63 16 11 N -0.88 -48.43 12.76 21.45 0.27 -48.16 16 12 Si 0.94 41.71 29.54 68.60 2.03 43.73 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 14 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 16 C -0.10 -3.30 5.87 -19.91 -0.12 -3.42 16 17 C -0.11 -3.53 9.20 71.23 0.66 -2.87 16 18 C -0.06 -1.69 9.41 22.54 0.21 -1.48 16 19 C -0.07 -1.86 5.73 -21.36 -0.12 -1.99 16 20 C 0.29 8.12 13.80 88.33 1.22 9.34 16 21 N -0.47 -14.33 18.54 19.00 0.35 -13.98 16 22 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 24 H 0.06 1.32 7.09 -2.39 -0.02 1.30 16 25 H 0.13 3.95 6.26 -2.91 -0.02 3.93 16 26 H 0.32 12.91 7.19 -89.69 -0.64 12.26 16 27 H 0.31 11.72 9.06 -89.69 -0.81 10.90 16 28 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 31 H 0.06 2.41 6.13 -2.39 -0.01 2.40 16 32 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -57.79 278.46 4.20 -53.59 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.30 Total: 23.12 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 3.27 Total: -21.95 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -0.79 Total: -98.49 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -57.79 4.20 -53.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.022 kcal (2) G-P(sol) polarization free energy of solvation -57.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds