Wall clock time and date at job start Mon Mar 30 2020 03:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38831 * 119.66703 * 2 1 4 4 C 1.36623 * 120.52986 * 179.97438 * 3 2 1 5 5 C 1.39632 * 119.75936 * 0.03763 * 4 3 2 6 6 C 1.46494 * 134.02567 * 180.33143 * 5 4 3 7 7 C 1.34238 * 106.99273 * 180.02562 * 6 5 4 8 8 C 1.50706 * 125.03586 * 179.86069 * 7 6 5 9 9 H 1.09000 * 109.47161 * 204.69691 * 8 7 6 10 10 N 1.46902 * 109.46577 * 324.69553 * 8 7 6 11 11 C 1.50697 * 109.47178 * 84.69325 * 8 7 6 12 12 H 1.07998 * 120.00039 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99815 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99915 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46998 * 89.99974 * 15 13 11 17 17 H 1.48499 * 109.47094 * 209.99977 * 15 13 11 18 18 H 1.48498 * 109.47121 * 330.00074 * 15 13 11 19 19 N 1.36832 * 109.93507 * 359.59587 * 7 6 5 20 20 H 0.97000 * 125.06638 * 180.26377 * 19 7 6 21 21 C 1.37689 * 109.87012 * 0.26522 * 19 7 6 22 22 C 1.37741 * 119.66663 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46892 * 270.02435 * 1 2 3 24 24 H 1.08997 * 109.46830 * 30.02514 * 1 2 3 25 25 H 1.09001 * 109.46958 * 150.02283 * 1 2 3 26 26 H 1.08004 * 119.73339 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.12267 * 180.02562 * 4 3 2 28 28 H 1.08001 * 126.50656 * 359.94442 * 6 5 4 29 29 H 1.00893 * 111.00154 * 296.04385 * 10 8 7 30 30 H 1.00903 * 110.99827 * 60.00558 * 10 8 7 31 31 H 0.97001 * 119.99839 * 179.97438 * 14 13 11 32 32 H 1.08008 * 120.11321 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2715 0.0253 0.0003 6 6 5.6966 -0.3143 0.0068 7 6 5.7806 -1.6540 0.0021 8 6 7.0663 -2.4403 0.0031 9 1 6.8905 -3.4248 -0.4304 10 7 8.0761 -1.7284 -0.7917 11 6 7.5591 -2.5954 1.4188 12 1 6.9973 -2.1679 2.2360 13 6 8.7273 -3.2832 1.6705 14 7 9.4116 -3.8034 0.6753 15 14 9.3378 -3.4762 3.4254 16 1 8.7725 -4.7175 4.0125 17 1 10.8205 -3.5583 3.4275 18 1 8.9057 -2.3061 4.2313 19 7 4.5260 -2.2002 0.0022 20 1 4.3319 -3.1506 0.0030 21 6 3.5801 -1.1997 0.0011 22 6 2.1888 -1.1969 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6444 2.1360 -0.0004 27 1 4.0881 2.1691 0.0009 28 1 6.5228 0.3812 0.0127 29 1 7.7978 -1.6683 -1.7596 30 1 8.2569 -0.8122 -0.4097 31 1 10.2337 -4.2870 0.8524 32 1 1.6452 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238526806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:34 Heat of formation + Delta-G solvation = 27.060967 kcal Electronic energy + Delta-G solvation = -15186.155840 eV Core-core repulsion = 12724.498520 eV Total energy + Delta-G solvation = -2461.657319 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.11420 -38.49092 -36.14604 -33.59125 -33.30019 -30.86097 -30.15815 -28.33144 -26.66579 -24.44119 -22.93289 -21.72944 -20.72766 -18.60245 -18.30485 -17.08270 -16.62171 -15.96877 -15.77907 -15.37541 -15.00678 -14.71277 -14.59887 -14.23119 -14.00646 -13.43367 -13.20148 -12.87967 -12.74942 -12.67533 -12.40757 -12.07944 -11.86315 -11.65713 -11.31246 -10.60362 -10.44998 -9.15862 -8.92623 -8.46019 -8.02869 -6.26408 0.27975 0.77049 1.41344 1.43554 1.52907 1.89388 2.32252 2.46927 3.01405 3.20606 3.85916 4.06461 4.10900 4.33531 4.38839 4.47388 4.59135 4.66913 4.86307 4.92901 4.94416 5.04891 5.10645 5.29650 5.34733 5.65601 5.70556 5.76749 5.93287 5.97886 6.12216 6.34484 6.58535 6.75845 6.99992 7.17110 7.46616 8.99204 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043273 B = 0.005970 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.904546 B = 4688.926805 C = 4834.567606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.086 4.086 5 C -0.134 4.134 6 C -0.242 4.242 7 C 0.083 3.917 8 C 0.282 3.718 9 H 0.019 0.981 10 N -0.807 5.807 11 C -0.546 4.546 12 H 0.042 0.958 13 C 0.041 3.959 14 N -0.875 5.875 15 Si 0.950 3.050 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.275 1.275 19 N -0.590 5.590 20 H 0.417 0.583 21 C 0.073 3.927 22 C -0.142 4.142 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.314 0.686 30 H 0.328 0.672 31 H 0.258 0.742 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.896 7.023 -1.866 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.080 4.080 3 C -0.168 4.168 4 C -0.105 4.105 5 C -0.139 4.139 6 C -0.267 4.267 7 C -0.028 4.028 8 C 0.171 3.829 9 H 0.037 0.963 10 N -0.334 5.334 11 C -0.584 4.584 12 H 0.060 0.940 13 C -0.164 4.164 14 N -0.511 5.511 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.200 1.200 19 N -0.194 5.194 20 H 0.254 0.746 21 C -0.034 4.034 22 C -0.163 4.163 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.166 0.834 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.206 6.183 -1.734 15.590 hybrid contribution 0.060 -0.110 0.678 0.689 sum -14.145 6.073 -1.056 15.430 Atomic orbital electron populations 1.20778 0.88521 1.03710 1.03047 1.19927 0.97438 0.91648 0.98980 1.20808 0.93269 0.98494 1.04220 1.20495 0.94547 0.95979 0.99443 1.19535 0.93117 0.93770 1.07474 1.21359 0.94716 0.93845 1.16786 1.22434 0.87425 0.94631 0.98323 1.17562 0.80964 0.90625 0.93749 0.96327 1.59107 1.47084 1.23491 1.03698 1.20994 1.09157 1.37088 0.91203 0.93972 1.25622 0.96375 0.94355 1.00056 1.70201 1.15153 1.33790 1.31912 0.85712 0.77502 0.78334 0.80857 1.20119 1.20637 1.19979 1.41895 1.04225 1.08291 1.64944 0.74572 1.18686 0.91652 0.88196 1.04902 1.20142 0.88969 0.99551 1.07658 0.90401 0.90006 0.90980 0.83434 0.85047 0.84511 0.87459 0.85966 0.93250 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.99 71.24 0.71 -0.97 16 2 C -0.08 -1.95 5.88 -19.84 -0.12 -2.07 16 3 C -0.15 -3.77 9.61 22.03 0.21 -3.56 16 4 C -0.09 -2.64 10.05 22.23 0.22 -2.42 16 5 C -0.13 -5.06 6.37 -20.20 -0.13 -5.19 16 6 C -0.24 -10.08 10.33 23.51 0.24 -9.83 16 7 C 0.08 3.65 6.07 40.87 0.25 3.89 16 8 C 0.28 14.03 3.13 43.42 0.14 14.17 16 9 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 10 N -0.81 -37.87 8.37 -174.95 -1.46 -39.34 16 11 C -0.55 -30.03 8.71 25.60 0.22 -29.80 16 12 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 13 C 0.04 2.23 5.39 84.66 0.46 2.68 16 14 N -0.88 -50.31 12.77 21.45 0.27 -50.04 16 15 Si 0.95 43.63 29.54 68.60 2.03 45.65 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 N -0.59 -22.78 6.07 -175.90 -1.07 -23.85 16 20 H 0.42 14.28 8.96 -92.71 -0.83 13.45 16 21 C 0.07 2.64 7.28 39.03 0.28 2.93 16 22 C -0.14 -4.16 9.71 22.37 0.22 -3.94 16 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 25 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 26 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 27 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.14 5.44 7.39 -2.91 -0.02 5.42 16 29 H 0.31 13.20 9.06 -89.70 -0.81 12.39 16 30 H 0.33 14.76 7.94 -89.69 -0.71 14.05 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -63.75 276.62 1.28 -62.47 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -1.20 Total: 39.20 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 2.71 Total: -34.11 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -2.26 Total: -113.22 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -63.75 1.28 -62.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238526806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.534 kcal (2) G-P(sol) polarization free energy of solvation -63.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds