Wall clock time and date at job start Mon Mar 30 2020 03:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38833 * 119.66335 * 2 1 4 4 C 1.36633 * 120.52691 * 180.02562 * 3 2 1 5 5 C 1.39628 * 119.76218 * 359.95679 * 4 3 2 6 6 C 1.46484 * 134.03050 * 180.02562 * 5 4 3 7 7 C 1.34242 * 106.99590 * 179.97438 * 6 5 4 8 8 C 1.50697 * 125.03164 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47205 * 155.02363 * 8 7 6 10 10 N 1.46901 * 109.47277 * 35.02628 * 8 7 6 11 11 C 1.50700 * 109.47266 * 275.02269 * 8 7 6 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 8 7 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 8 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 N 1.36824 * 109.93029 * 0.26297 * 7 6 5 20 20 H 0.97001 * 125.06140 * 179.73847 * 19 7 6 21 21 C 1.37688 * 109.87784 * 359.55827 * 19 7 6 22 22 C 1.37747 * 119.66825 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47227 * 270.02165 * 1 2 3 24 24 H 1.09000 * 109.47551 * 30.01996 * 1 2 3 25 25 H 1.09001 * 109.47566 * 150.02070 * 1 2 3 26 26 H 1.07999 * 119.73710 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.11530 * 179.97438 * 4 3 2 28 28 H 1.07994 * 126.50424 * 359.94239 * 6 5 4 29 29 H 1.00893 * 110.99930 * 299.99775 * 10 8 7 30 30 H 1.00899 * 110.99979 * 63.95221 * 10 8 7 31 31 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 32 32 H 1.07994 * 120.11110 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2270 -0.0005 5 6 4.2715 0.0255 -0.0002 6 6 5.6965 -0.3141 0.0000 7 6 5.7806 -1.6539 0.0009 8 6 7.0663 -2.4400 0.0008 9 1 6.8906 -3.4240 0.4356 10 7 8.0761 -1.7272 0.7947 11 6 7.5590 -2.5970 -1.4146 12 1 6.9975 -2.1699 -2.2324 13 6 8.7267 -3.2859 -1.6658 14 7 9.4133 -3.8013 -0.6695 15 14 9.3378 -3.4799 -3.4202 16 1 8.3947 -2.8080 -4.3500 17 1 10.6826 -2.8629 -3.5470 18 1 9.4215 -4.9234 -3.7585 19 7 4.5260 -2.2000 -0.0044 20 1 4.3320 -3.1504 -0.0085 21 6 3.5800 -1.1996 0.0009 22 6 2.1888 -1.1969 0.0005 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6443 2.1360 0.0004 27 1 4.0880 2.1692 -0.0009 28 1 6.5227 0.3814 -0.0011 29 1 8.2568 -0.8114 0.4116 30 1 7.7979 -1.6658 1.7626 31 1 10.2346 -4.2863 -0.8462 32 1 1.6452 -2.1301 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238526897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:35 Heat of formation + Delta-G solvation = 46.050020 kcal Electronic energy + Delta-G solvation = -15185.662921 eV Core-core repulsion = 12724.829028 eV Total energy + Delta-G solvation = -2460.833892 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72001 -37.18922 -34.34089 -32.10693 -31.60121 -29.54649 -28.81497 -26.50254 -25.25487 -22.87480 -21.45940 -20.46608 -19.16366 -16.97878 -16.49591 -15.73260 -14.82863 -14.45235 -14.19864 -13.98817 -13.58446 -13.44464 -13.16816 -12.92084 -12.30240 -12.05186 -12.00205 -11.50487 -11.11327 -10.95101 -10.80722 -10.65846 -10.47280 -9.94286 -9.37588 -9.03842 -8.52595 -7.61723 -7.36358 -6.99110 -5.97234 -4.13312 1.55920 2.02003 3.28491 3.35633 3.38619 3.47279 3.73611 4.27984 4.43544 5.06294 5.13636 5.27795 5.39259 5.42159 5.66254 5.69323 5.79721 5.89085 5.95461 6.20263 6.21918 6.34922 6.47191 6.56181 6.88001 6.94905 7.01145 7.27232 7.51089 7.74864 7.82833 8.01797 8.18907 8.51756 8.90001 9.02500 9.56326 11.06738 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043272 B = 0.005971 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.908174 B = 4688.280906 C = 4834.817277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.077 4.077 5 C -0.100 4.100 6 C -0.240 4.240 7 C 0.108 3.892 8 C 0.274 3.726 9 H 0.046 0.954 10 N -0.799 5.799 11 C -0.533 4.533 12 H 0.057 0.943 13 C 0.084 3.916 14 N -0.845 5.845 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.284 1.284 19 N -0.590 5.590 20 H 0.411 0.589 21 C 0.087 3.913 22 C -0.129 4.129 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.324 0.676 30 H 0.301 0.699 31 H 0.257 0.743 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 5.845 2.346 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.089 4.089 3 C -0.172 4.172 4 C -0.096 4.096 5 C -0.105 4.105 6 C -0.264 4.264 7 C -0.003 4.003 8 C 0.163 3.837 9 H 0.064 0.936 10 N -0.324 5.324 11 C -0.572 4.572 12 H 0.075 0.925 13 C -0.123 4.123 14 N -0.480 5.480 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.211 1.211 19 N -0.192 5.192 20 H 0.248 0.752 21 C -0.021 4.021 22 C -0.150 4.150 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.964 5.009 2.204 13.157 hybrid contribution -0.452 0.160 -0.836 0.964 sum -12.416 5.169 1.368 13.519 Atomic orbital electron populations 1.20683 0.91673 1.02148 1.01677 1.19360 0.95179 0.92391 1.02018 1.20352 0.93867 0.96830 1.06147 1.20185 0.93477 0.96254 0.99681 1.19300 0.93761 0.92194 1.05270 1.21220 0.93481 0.94112 1.17555 1.22999 0.87479 0.94493 0.95366 1.17986 0.79313 0.91226 0.95212 0.93647 1.59277 1.46849 1.23368 1.02940 1.20821 1.09118 1.37175 0.90067 0.92524 1.24947 0.96201 0.94634 0.96520 1.70114 1.14712 1.33131 1.30019 0.86622 0.78892 0.77695 0.85223 1.19831 1.20847 1.21052 1.41988 1.04702 1.07744 1.64750 0.75242 1.18298 0.90585 0.88693 1.04496 1.19774 0.90065 0.97730 1.07424 0.91793 0.91928 0.92114 0.86859 0.86675 0.84532 0.86375 0.88833 0.93315 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.99 36.00 0.36 -0.73 16 2 C -0.09 -1.25 5.88 -104.58 -0.61 -1.87 16 3 C -0.15 -2.20 9.62 -39.94 -0.38 -2.58 16 4 C -0.08 -1.26 10.05 -39.64 -0.40 -1.66 16 5 C -0.10 -1.91 6.37 -105.14 -0.67 -2.58 16 6 C -0.24 -4.87 10.33 -37.67 -0.39 -5.26 16 7 C 0.11 2.29 6.07 -81.77 -0.50 1.79 16 8 C 0.27 6.55 3.13 -70.02 -0.22 6.33 16 9 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 10 N -0.80 -18.20 8.37 -6.65 -0.06 -18.25 16 11 C -0.53 -14.28 8.71 -34.44 -0.30 -14.58 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.08 2.29 5.39 -17.82 -0.10 2.19 16 14 N -0.85 -23.88 12.76 55.43 0.71 -23.18 16 15 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 N -0.59 -11.14 6.07 -6.95 -0.04 -11.18 16 20 H 0.41 6.82 8.96 -40.82 -0.37 6.45 16 21 C 0.09 1.60 7.28 -83.99 -0.61 0.99 16 22 C -0.13 -2.02 9.71 -39.43 -0.38 -2.40 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 25 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.14 2.64 7.39 -52.49 -0.39 2.25 16 29 H 0.32 7.09 7.93 -39.30 -0.31 6.78 16 30 H 0.30 6.15 9.06 -39.29 -0.36 5.79 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 276.60 15.07 4.17 4.17 Total: -1.00 -29.61 276.60 -8.36 -37.98 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -3.92 Total: 14.84 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -4.20 Total: -20.35 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.61 Total: -52.61 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.61 -8.36 -37.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238526897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.025 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds