Wall clock time and date at job start Mon Mar 30 2020 03:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38833 * 119.66335 * 2 1 4 4 C 1.36633 * 120.52691 * 180.02562 * 3 2 1 5 5 C 1.39628 * 119.76218 * 359.95679 * 4 3 2 6 6 C 1.46484 * 134.03050 * 180.02562 * 5 4 3 7 7 C 1.34242 * 106.99590 * 179.97438 * 6 5 4 8 8 C 1.50697 * 125.03164 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47205 * 155.02363 * 8 7 6 10 10 N 1.46901 * 109.47277 * 35.02628 * 8 7 6 11 11 C 1.50700 * 109.47266 * 275.02269 * 8 7 6 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 8 7 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 8 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 N 1.36824 * 109.93029 * 0.26297 * 7 6 5 20 20 H 0.97001 * 125.06140 * 179.73847 * 19 7 6 21 21 C 1.37688 * 109.87784 * 359.55827 * 19 7 6 22 22 C 1.37747 * 119.66825 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47227 * 270.02165 * 1 2 3 24 24 H 1.09000 * 109.47551 * 30.01996 * 1 2 3 25 25 H 1.09001 * 109.47566 * 150.02070 * 1 2 3 26 26 H 1.07999 * 119.73710 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.11530 * 179.97438 * 4 3 2 28 28 H 1.07994 * 126.50424 * 359.94239 * 6 5 4 29 29 H 1.00893 * 110.99930 * 299.99775 * 10 8 7 30 30 H 1.00899 * 110.99979 * 63.95221 * 10 8 7 31 31 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 32 32 H 1.07994 * 120.11110 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2270 -0.0005 5 6 4.2715 0.0255 -0.0002 6 6 5.6965 -0.3141 0.0000 7 6 5.7806 -1.6539 0.0009 8 6 7.0663 -2.4400 0.0008 9 1 6.8906 -3.4240 0.4356 10 7 8.0761 -1.7272 0.7947 11 6 7.5590 -2.5970 -1.4146 12 1 6.9975 -2.1699 -2.2324 13 6 8.7267 -3.2859 -1.6658 14 7 9.4133 -3.8013 -0.6695 15 14 9.3378 -3.4799 -3.4202 16 1 8.3947 -2.8080 -4.3500 17 1 10.6826 -2.8629 -3.5470 18 1 9.4215 -4.9234 -3.7585 19 7 4.5260 -2.2000 -0.0044 20 1 4.3320 -3.1504 -0.0085 21 6 3.5800 -1.1996 0.0009 22 6 2.1888 -1.1969 0.0005 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6443 2.1360 0.0004 27 1 4.0880 2.1692 -0.0009 28 1 6.5227 0.3814 -0.0011 29 1 8.2568 -0.8114 0.4116 30 1 7.7979 -1.6658 1.7626 31 1 10.2346 -4.2863 -0.8462 32 1 1.6452 -2.1301 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238526897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:35 Heat of formation + Delta-G solvation = 27.018044 kcal Electronic energy + Delta-G solvation = -15186.488209 eV Core-core repulsion = 12724.829028 eV Total energy + Delta-G solvation = -2461.659181 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.11490 -38.49099 -36.14675 -33.59215 -33.30042 -30.86120 -30.15794 -28.33278 -26.66705 -24.44213 -22.93364 -21.72918 -20.72782 -18.60588 -18.30632 -17.08363 -16.62396 -15.97335 -15.77737 -15.36691 -15.00981 -14.72203 -14.58868 -14.23857 -14.01003 -13.42905 -13.20501 -12.87706 -12.76835 -12.66358 -12.41102 -12.07803 -11.86983 -11.65378 -11.29519 -10.61100 -10.45003 -9.15806 -8.92647 -8.45980 -8.03042 -6.26551 0.27972 0.77048 1.40511 1.43400 1.53633 1.89425 2.32245 2.46788 3.01398 3.20319 3.85940 4.06499 4.10948 4.33529 4.38817 4.47370 4.59163 4.66846 4.86296 4.92948 4.94399 5.04926 5.10661 5.29646 5.34752 5.65611 5.70698 5.76730 5.93208 5.97789 6.12212 6.34492 6.58634 6.75846 7.00096 7.17037 7.46491 8.99129 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043272 B = 0.005971 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.908174 B = 4688.280906 C = 4834.817277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.086 4.086 5 C -0.134 4.134 6 C -0.243 4.243 7 C 0.083 3.917 8 C 0.282 3.718 9 H 0.019 0.981 10 N -0.807 5.807 11 C -0.545 4.545 12 H 0.042 0.958 13 C 0.040 3.960 14 N -0.875 5.875 15 Si 0.951 3.049 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.278 1.278 19 N -0.590 5.590 20 H 0.417 0.583 21 C 0.073 3.927 22 C -0.142 4.142 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.328 0.672 30 H 0.314 0.686 31 H 0.258 0.742 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.888 7.022 1.894 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.080 4.080 3 C -0.168 4.168 4 C -0.105 4.105 5 C -0.139 4.139 6 C -0.267 4.267 7 C -0.028 4.028 8 C 0.171 3.829 9 H 0.037 0.963 10 N -0.334 5.334 11 C -0.583 4.583 12 H 0.060 0.940 13 C -0.164 4.164 14 N -0.511 5.511 15 Si 0.777 3.223 16 H -0.200 1.200 17 H -0.205 1.205 18 H -0.204 1.204 19 N -0.193 5.193 20 H 0.254 0.746 21 C -0.034 4.034 22 C -0.163 4.163 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.199 6.185 1.755 15.587 hybrid contribution 0.066 -0.111 -0.658 0.671 sum -14.133 6.074 1.097 15.422 Atomic orbital electron populations 1.20776 0.88524 1.03639 1.03119 1.19927 0.97436 0.91648 0.98980 1.20810 0.93268 0.98491 1.04221 1.20496 0.94545 0.95979 0.99445 1.19534 0.93122 0.93769 1.07468 1.21357 0.94718 0.93840 1.16809 1.22432 0.87426 0.94637 0.98315 1.17568 0.80968 0.90633 0.93765 0.96313 1.59108 1.47070 1.23491 1.03696 1.21023 1.09167 1.36959 0.91184 0.93996 1.25627 0.96372 0.94386 1.00061 1.70215 1.15096 1.33939 1.31808 0.85650 0.78144 0.77759 0.80788 1.20014 1.20452 1.20358 1.41891 1.04227 1.08297 1.64934 0.74574 1.18687 0.91650 0.88198 1.04909 1.20139 0.88969 0.99551 1.07664 0.90195 0.90101 0.91091 0.83434 0.85042 0.84494 0.85968 0.87458 0.93260 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.99 71.24 0.71 -0.97 16 2 C -0.08 -1.95 5.88 -19.84 -0.12 -2.07 16 3 C -0.15 -3.77 9.62 22.04 0.21 -3.56 16 4 C -0.09 -2.64 10.05 22.23 0.22 -2.42 16 5 C -0.13 -5.06 6.37 -20.20 -0.13 -5.19 16 6 C -0.24 -10.08 10.33 23.51 0.24 -9.84 16 7 C 0.08 3.65 6.07 40.87 0.25 3.90 16 8 C 0.28 14.01 3.13 43.42 0.14 14.15 16 9 H 0.02 1.02 8.14 -2.38 -0.02 1.01 16 10 N -0.81 -37.85 8.37 -174.95 -1.46 -39.32 16 11 C -0.54 -29.97 8.71 25.60 0.22 -29.75 16 12 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 13 C 0.04 2.20 5.39 84.66 0.46 2.66 16 14 N -0.88 -50.28 12.76 21.45 0.27 -50.00 16 15 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 N -0.59 -22.80 6.07 -175.91 -1.07 -23.86 16 20 H 0.42 14.29 8.96 -92.71 -0.83 13.46 16 21 C 0.07 2.64 7.28 39.03 0.28 2.93 16 22 C -0.14 -4.16 9.71 22.37 0.22 -3.94 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 25 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 26 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 27 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.14 5.44 7.39 -2.91 -0.02 5.42 16 29 H 0.33 14.75 7.93 -89.70 -0.71 14.04 16 30 H 0.31 13.20 9.06 -89.70 -0.81 12.38 16 31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -63.82 276.60 1.28 -62.54 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -1.20 Total: 39.06 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 2.71 Total: -34.11 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -2.26 Total: -113.18 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -63.82 1.28 -62.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238526897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.560 kcal (2) G-P(sol) polarization free energy of solvation -63.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds