Wall clock time and date at job start Mon Mar 30 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47099 * 270.00007 * 3 2 1 5 5 H 1.48497 * 109.47074 * 30.00309 * 3 2 1 6 6 H 1.48499 * 109.46904 * 150.00484 * 3 2 1 7 7 C 1.37881 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99800 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46943 * 179.97438 * 9 7 2 11 11 C 1.37786 * 120.00250 * 179.97438 * 10 9 7 12 12 N 1.30083 * 120.20772 * 0.03000 * 11 10 9 13 13 C 1.45925 * 121.99339 * 181.22325 * 12 11 10 14 14 C 1.52763 * 111.21033 * 323.51069 * 13 12 11 15 15 C 1.50616 * 109.55837 * 50.22528 * 14 13 12 16 16 C 1.37687 * 121.24532 * 146.17436 * 15 14 13 17 17 C 1.38461 * 119.85408 * 179.75030 * 16 15 14 18 18 C 1.38358 * 120.40754 * 0.54184 * 17 16 15 19 19 C 1.38128 * 120.21832 * 359.71982 * 18 17 16 20 20 C 1.39085 * 119.55831 * 0.02562 * 19 18 17 21 21 H 0.97009 * 119.99797 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47119 * 60.00256 * 9 7 2 23 23 H 1.09000 * 109.47086 * 299.99900 * 9 7 2 24 24 H 0.97007 * 120.00020 * 0.02562 * 10 9 7 25 25 H 1.09000 * 109.12705 * 83.95247 * 13 12 11 26 26 H 1.08995 * 109.13200 * 203.06532 * 13 12 11 27 27 H 1.09000 * 109.45887 * 290.19878 * 14 13 12 28 28 H 1.09003 * 109.45743 * 170.24830 * 14 13 12 29 29 H 1.08004 * 120.07033 * 0.28030 * 16 15 14 30 30 H 1.07998 * 119.79186 * 180.27042 * 17 16 15 31 31 H 1.07996 * 119.88795 * 179.70059 * 18 17 16 32 32 H 1.08007 * 120.22361 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 1.7436 -4.9118 -0.0015 12 7 0.4655 -5.1541 -0.0007 13 6 -0.0636 -6.5138 0.0261 14 6 0.8059 -7.4615 -0.7982 15 6 2.2482 -7.3021 -0.3945 16 6 3.1142 -8.3725 -0.4011 17 6 4.4358 -8.1922 -0.0295 18 6 4.8898 -6.9445 0.3597 19 6 4.0283 -5.8650 0.3752 20 6 2.7013 -6.0406 -0.0024 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0021 25 1 -0.0954 -6.8644 1.0577 26 1 -1.0747 -6.5118 -0.3809 27 1 0.6971 -7.2260 -1.8568 28 1 0.4909 -8.4899 -0.6210 29 1 2.7655 -9.3489 -0.7038 30 1 5.1152 -9.0316 -0.0393 31 1 5.9211 -6.8144 0.6526 32 1 4.3828 -4.8909 0.6786 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238545299.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:39 Heat of formation + Delta-G solvation = 37.421079 kcal Electronic energy + Delta-G solvation = -15147.487156 eV Core-core repulsion = 12686.279085 eV Total energy + Delta-G solvation = -2461.208071 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.89795 -36.62400 -34.85862 -32.78146 -31.13694 -30.39345 -28.82493 -26.59261 -23.57473 -23.25697 -22.24275 -20.88268 -18.27111 -17.48473 -16.16161 -15.41833 -15.35316 -14.82989 -14.72167 -14.07868 -13.71023 -13.11416 -12.91525 -12.78320 -12.47866 -12.17768 -11.90400 -11.65633 -11.42826 -10.96909 -10.90192 -10.75748 -10.25147 -10.16535 -9.26224 -8.82600 -8.63307 -8.32777 -8.21870 -6.96844 -6.08315 -4.13937 1.10242 1.39502 3.21265 3.28778 3.34736 3.37164 4.03843 4.18373 4.44265 4.72691 4.83454 4.92698 5.05928 5.23426 5.27709 5.37663 5.50437 5.60147 5.66284 5.91764 6.00341 6.08165 6.29685 6.31349 6.43080 6.49693 6.67815 6.97290 7.46764 7.72304 7.72551 8.02148 8.13439 8.66127 8.87622 9.26087 9.51926 11.01805 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037437 B = 0.006091 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.752947 B = 4596.168708 C = 5276.594855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.434 3.566 12 N -0.617 5.617 13 C 0.079 3.921 14 C -0.112 4.112 15 C -0.059 4.059 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.128 4.128 19 C -0.090 4.090 20 C -0.093 4.093 21 H 0.264 0.736 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.393 0.607 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -15.385 -0.272 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.144 3.856 10 N -0.331 5.331 11 C 0.156 3.844 12 N -0.347 5.347 13 C -0.052 4.052 14 C -0.150 4.150 15 C -0.061 4.061 16 C -0.140 4.140 17 C -0.131 4.131 18 C -0.146 4.146 19 C -0.110 4.110 20 C -0.097 4.097 21 H 0.074 0.926 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.228 0.772 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.094 -14.748 -0.273 15.960 hybrid contribution 1.421 0.270 -0.019 1.447 sum 7.515 -14.479 -0.292 16.315 Atomic orbital electron populations 1.69984 1.06028 1.27050 1.49249 1.24915 0.94869 0.99240 0.94902 0.86465 0.79650 0.82924 0.78146 1.20550 1.21066 1.19839 1.21288 0.93217 0.90804 1.52764 0.92187 1.18987 0.87890 0.81089 0.97591 1.44998 1.09617 1.02097 1.76411 1.19919 0.88552 0.85096 0.90799 1.71626 1.11500 1.19832 1.31729 1.21630 0.98164 0.87244 0.98177 1.21032 0.91514 1.01086 1.01414 1.19937 0.96170 0.92420 0.97550 1.20841 0.93501 0.98171 1.01485 1.21200 0.95580 0.97279 0.99059 1.21103 0.99717 0.92823 1.00962 1.21232 0.92334 0.99326 0.98079 1.19738 0.94256 0.94302 1.01437 0.92607 0.95710 0.95656 0.77202 0.93140 0.90194 0.90285 0.90445 0.85866 0.86090 0.85838 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.15 5.44 -5.19 -0.03 7.12 16 10 N -0.70 -15.40 5.61 -59.76 -0.34 -15.73 16 11 C 0.43 8.97 7.54 -154.45 -1.16 7.80 16 12 N -0.62 -13.39 9.99 -59.03 -0.59 -13.97 16 13 C 0.08 1.34 7.03 -4.47 -0.03 1.30 16 14 C -0.11 -1.57 6.08 -28.05 -0.17 -1.74 16 15 C -0.06 -0.87 5.68 -104.34 -0.59 -1.46 16 16 C -0.12 -1.47 9.75 -39.70 -0.39 -1.85 16 17 C -0.11 -1.24 10.04 -39.45 -0.40 -1.64 16 18 C -0.13 -1.51 10.03 -39.58 -0.40 -1.91 16 19 C -0.09 -1.29 9.50 -39.31 -0.37 -1.66 16 20 C -0.09 -1.57 5.77 -105.03 -0.61 -2.17 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.39 7.72 6.93 -40.82 -0.28 7.43 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.72 6.97 -52.48 -0.37 1.35 16 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -31.50 274.11 -9.63 -41.13 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.98 Total: 3.81 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -4.56 Total: -9.85 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.19 Total: -55.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.50 -9.63 -41.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238545299.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.548 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds