Wall clock time and date at job start Mon Mar 30 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47099 * 270.00007 * 3 2 1 5 5 H 1.48497 * 109.47074 * 30.00309 * 3 2 1 6 6 H 1.48499 * 109.46904 * 150.00484 * 3 2 1 7 7 C 1.37881 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99800 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46943 * 179.97438 * 9 7 2 11 11 C 1.37786 * 120.00250 * 179.97438 * 10 9 7 12 12 N 1.30083 * 120.20772 * 0.03000 * 11 10 9 13 13 C 1.45925 * 121.99339 * 181.22325 * 12 11 10 14 14 C 1.52763 * 111.21033 * 323.51069 * 13 12 11 15 15 C 1.50616 * 109.55837 * 50.22528 * 14 13 12 16 16 C 1.37687 * 121.24532 * 146.17436 * 15 14 13 17 17 C 1.38461 * 119.85408 * 179.75030 * 16 15 14 18 18 C 1.38358 * 120.40754 * 0.54184 * 17 16 15 19 19 C 1.38128 * 120.21832 * 359.71982 * 18 17 16 20 20 C 1.39085 * 119.55831 * 0.02562 * 19 18 17 21 21 H 0.97009 * 119.99797 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47119 * 60.00256 * 9 7 2 23 23 H 1.09000 * 109.47086 * 299.99900 * 9 7 2 24 24 H 0.97007 * 120.00020 * 0.02562 * 10 9 7 25 25 H 1.09000 * 109.12705 * 83.95247 * 13 12 11 26 26 H 1.08995 * 109.13200 * 203.06532 * 13 12 11 27 27 H 1.09000 * 109.45887 * 290.19878 * 14 13 12 28 28 H 1.09003 * 109.45743 * 170.24830 * 14 13 12 29 29 H 1.08004 * 120.07033 * 0.28030 * 16 15 14 30 30 H 1.07998 * 119.79186 * 180.27042 * 17 16 15 31 31 H 1.07996 * 119.88795 * 179.70059 * 18 17 16 32 32 H 1.08007 * 120.22361 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 1.7436 -4.9118 -0.0015 12 7 0.4655 -5.1541 -0.0007 13 6 -0.0636 -6.5138 0.0261 14 6 0.8059 -7.4615 -0.7982 15 6 2.2482 -7.3021 -0.3945 16 6 3.1142 -8.3725 -0.4011 17 6 4.4358 -8.1922 -0.0295 18 6 4.8898 -6.9445 0.3597 19 6 4.0283 -5.8650 0.3752 20 6 2.7013 -6.0406 -0.0024 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 3.1566 -3.4355 -0.0021 25 1 -0.0954 -6.8644 1.0577 26 1 -1.0747 -6.5118 -0.3809 27 1 0.6971 -7.2260 -1.8568 28 1 0.4909 -8.4899 -0.6210 29 1 2.7655 -9.3489 -0.7038 30 1 5.1152 -9.0316 -0.0393 31 1 5.9211 -6.8144 0.6526 32 1 4.3828 -4.8909 0.6786 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238545299.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:38 Heat of formation + Delta-G solvation = 16.677941 kcal Electronic energy + Delta-G solvation = -15148.386646 eV Core-core repulsion = 12686.279085 eV Total energy + Delta-G solvation = -2462.107561 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05332 -38.04165 -36.40058 -34.73718 -32.55647 -31.54635 -30.18929 -28.50879 -24.96555 -24.77786 -23.63650 -22.18043 -19.83157 -18.94165 -17.86555 -16.89661 -16.52711 -16.43158 -16.11407 -15.40266 -15.06784 -14.75988 -14.45089 -14.06868 -13.90554 -13.72326 -13.30507 -13.08061 -12.77017 -12.72139 -12.41894 -12.17133 -11.87051 -11.80615 -11.39060 -10.68296 -9.85265 -9.67971 -9.59293 -8.72116 -8.25477 -6.41218 0.00474 0.41880 1.42341 1.45217 1.56191 1.87296 2.34917 2.65538 2.91972 3.08810 3.58469 3.73678 3.89686 4.06517 4.22257 4.30303 4.40498 4.54303 4.62351 4.70376 4.89095 4.99999 5.03674 5.15693 5.25025 5.41067 5.43925 5.52489 5.53450 5.67059 5.90255 6.02600 6.30270 6.74674 6.90090 7.29111 7.69115 8.86634 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037437 B = 0.006091 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.752947 B = 4596.168708 C = 5276.594855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.291 3.709 10 N -0.702 5.702 11 C 0.427 3.573 12 N -0.671 5.671 13 C 0.073 3.927 14 C -0.104 4.104 15 C -0.074 4.074 16 C -0.117 4.117 17 C -0.099 4.099 18 C -0.125 4.125 19 C -0.100 4.100 20 C -0.127 4.127 21 H 0.268 0.732 22 H -0.017 1.017 23 H -0.016 1.016 24 H 0.404 0.596 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.114 -17.207 -0.363 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.597 4.597 8 H 0.094 0.906 9 C 0.168 3.832 10 N -0.338 5.338 11 C 0.150 3.850 12 N -0.401 5.401 13 C -0.057 4.057 14 C -0.142 4.142 15 C -0.076 4.076 16 C -0.135 4.135 17 C -0.117 4.117 18 C -0.143 4.143 19 C -0.120 4.120 20 C -0.131 4.131 21 H 0.076 0.924 22 H 0.001 0.999 23 H 0.002 0.998 24 H 0.241 0.759 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.920 -16.621 -0.364 18.867 hybrid contribution 0.530 0.690 0.023 0.870 sum 9.450 -15.932 -0.342 18.527 Atomic orbital electron populations 1.70148 1.08162 1.28355 1.50143 1.26016 0.95768 1.03663 0.93958 0.85195 0.78482 0.77185 0.78564 1.19629 1.20750 1.18156 1.21668 0.94090 0.91172 1.52732 0.90560 1.18306 0.88015 0.83234 0.93644 1.44660 1.09278 1.02023 1.77879 1.20269 0.89603 0.85378 0.89779 1.71474 1.13153 1.23590 1.31879 1.21712 0.98826 0.86056 0.99128 1.20964 0.90956 1.02074 1.00191 1.20140 0.96879 0.92460 0.98170 1.21228 0.93515 0.98497 1.00262 1.21725 0.95697 0.98023 0.96270 1.21483 1.00677 0.92283 0.99849 1.21372 0.91806 1.00556 0.98313 1.19594 0.94696 0.93635 1.05186 0.92352 0.99929 0.99829 0.75926 0.92840 0.89934 0.90949 0.86649 0.82550 0.82071 0.82753 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.98 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -31.95 9.28 25.60 0.24 -31.71 16 8 H 0.08 4.01 7.60 -2.91 -0.02 3.98 16 9 C 0.29 16.80 5.44 85.63 0.47 17.26 16 10 N -0.70 -32.84 5.61 -342.98 -1.92 -34.76 16 11 C 0.43 18.54 7.54 136.54 1.03 19.57 16 12 N -0.67 -30.98 9.99 -340.68 -3.40 -34.38 16 13 C 0.07 2.54 7.03 86.41 0.61 3.15 16 14 C -0.10 -2.79 6.08 29.74 0.18 -2.61 16 15 C -0.07 -2.08 5.68 -19.68 -0.11 -2.19 16 16 C -0.12 -2.33 9.75 22.19 0.22 -2.12 16 17 C -0.10 -1.69 10.04 22.35 0.22 -1.46 16 18 C -0.13 -2.50 10.03 22.27 0.22 -2.27 16 19 C -0.10 -2.77 9.50 22.45 0.21 -2.56 16 20 C -0.13 -4.27 5.77 -20.13 -0.12 -4.39 16 21 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 22 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 23 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 24 H 0.40 16.55 6.93 -92.70 -0.64 15.91 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.12 2.17 8.09 -2.39 -0.02 2.15 16 29 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.13 3.39 6.97 -2.91 -0.02 3.37 16 Total: -1.00 -72.99 274.11 1.09 -71.90 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.48 Total: 17.34 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 3.63 Total: -8.56 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -5.04 Total: -126.47 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.99 1.09 -71.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238545299.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.575 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds