Wall clock time and date at job start Mon Mar 30 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99374 * 2 1 4 4 H 1.48500 * 109.47096 * 269.99778 * 3 2 1 5 5 H 1.48501 * 109.47527 * 29.99878 * 3 2 1 6 6 H 1.48507 * 109.46878 * 150.00128 * 3 2 1 7 7 C 1.37867 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00161 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00217 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47440 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47437 * 55.00154 * 10 9 7 12 12 N 1.46905 * 109.46982 * 294.99988 * 10 9 7 13 13 C 1.50701 * 109.47209 * 175.00074 * 10 9 7 14 14 C 1.34241 * 126.50105 * 100.02486 * 13 10 9 15 15 N 1.36830 * 109.93178 * 179.97438 * 14 13 10 16 16 H 0.96993 * 125.06361 * 179.97438 * 15 14 13 17 17 C 1.37694 * 109.87033 * 359.97438 * 15 14 13 18 18 C 1.39133 * 133.50725 * 180.02562 * 17 15 14 19 19 C 1.37742 * 119.77580 * 179.97438 * 18 17 15 20 20 C 1.38835 * 120.67224 * 0.02562 * 19 18 17 21 21 C 1.36632 * 120.52334 * 359.97438 * 20 19 18 22 22 C 1.39626 * 119.76083 * 0.26109 * 21 20 19 23 23 H 0.96998 * 120.00342 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47259 * 59.99747 * 9 7 2 25 25 H 1.09000 * 109.47294 * 300.00094 * 9 7 2 26 26 H 1.00899 * 110.99890 * 176.04702 * 12 10 9 27 27 H 1.00905 * 110.99966 * 300.00083 * 12 10 9 28 28 H 1.07997 * 125.03730 * 359.97289 * 14 13 10 29 29 H 1.07992 * 120.10896 * 359.97438 * 18 17 15 30 30 H 1.08005 * 119.66612 * 180.02562 * 19 18 17 31 31 H 1.07994 * 119.74119 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.11467 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 1 3.5868 -3.1756 -0.8415 12 7 3.6336 -3.2928 1.2556 13 6 5.5236 -2.6381 -0.1243 14 6 6.4073 -2.7957 0.8738 15 7 7.6825 -2.7411 0.3807 16 1 8.4895 -2.8291 0.9116 17 6 7.6495 -2.5426 -0.9815 18 6 8.6352 -2.4147 -1.9550 19 6 8.2763 -2.2190 -3.2703 20 6 6.9390 -2.1473 -3.6364 21 6 5.9547 -2.2702 -2.6967 22 6 6.2961 -2.4642 -1.3568 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.6794 0.8894 25 1 3.8746 -0.6806 -0.8905 26 1 3.9027 -4.2653 1.2534 27 1 4.0247 -2.8113 2.0514 28 1 6.1500 -2.9436 1.9122 29 1 9.6782 -2.4687 -1.6802 30 1 9.0429 -2.1204 -4.0247 31 1 6.6745 -1.9938 -4.6721 32 1 4.9165 -2.2129 -2.9887 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259608897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:08 Heat of formation + Delta-G solvation = 53.439628 kcal Electronic energy + Delta-G solvation = -15370.213702 eV Core-core repulsion = 12909.700248 eV Total energy + Delta-G solvation = -2460.513455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.07738 -36.87234 -35.49905 -32.34021 -31.22288 -29.29353 -28.73974 -28.15198 -24.18340 -22.66984 -21.52952 -20.87504 -18.67743 -17.72969 -16.47245 -16.15970 -15.31945 -15.15064 -14.33778 -14.12742 -13.82804 -13.61916 -13.41817 -12.81745 -12.41461 -12.19150 -11.54630 -11.50064 -11.29821 -10.94353 -10.75117 -10.31594 -10.22725 -9.64230 -9.17532 -9.02388 -8.38957 -8.05176 -7.95373 -7.37109 -5.87251 -3.81450 1.30669 1.80435 2.92310 3.27081 3.39674 3.46822 3.51307 4.11265 4.58420 4.90015 4.98622 5.16183 5.27918 5.30209 5.47921 5.53754 5.67595 5.82475 5.98477 6.09299 6.19197 6.37449 6.60504 6.71247 6.80118 6.90410 7.05250 7.22874 7.34009 7.44915 7.68429 7.88406 8.04235 8.18434 8.75836 9.25789 9.75919 11.26661 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.007711 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.745437 B = 3630.229659 C = 4062.011143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.062 3.938 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.492 4.492 8 H 0.080 0.920 9 C 0.002 3.998 10 C 0.174 3.826 11 H 0.081 0.919 12 N -0.820 5.820 13 C -0.175 4.175 14 C 0.026 3.974 15 N -0.599 5.599 16 H 0.410 0.590 17 C 0.094 3.906 18 C -0.140 4.140 19 C -0.101 4.101 20 C -0.156 4.156 21 C -0.059 4.059 22 C -0.099 4.099 23 H 0.259 0.741 24 H 0.012 0.988 25 H 0.014 0.986 26 H 0.324 0.676 27 H 0.331 0.669 28 H 0.163 0.837 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.067 -5.783 -1.811 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.530 4.530 8 H 0.098 0.902 9 C -0.035 4.035 10 C 0.061 3.939 11 H 0.099 0.901 12 N -0.346 5.346 13 C -0.184 4.184 14 C -0.099 4.099 15 N -0.202 5.202 16 H 0.246 0.754 17 C -0.013 4.013 18 C -0.161 4.161 19 C -0.120 4.120 20 C -0.175 4.175 21 C -0.077 4.077 22 C -0.104 4.104 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.180 0.820 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 17.210 -5.499 -1.896 18.166 hybrid contribution 1.940 0.866 0.476 2.177 sum 19.149 -4.633 -1.420 19.753 Atomic orbital electron populations 1.69915 1.06113 1.26362 1.52454 1.24993 0.94653 0.98677 0.95420 0.86907 0.80301 0.84427 0.78344 1.20516 1.21645 1.19376 1.21084 0.88948 0.94509 1.48480 0.90172 1.19574 0.97485 0.90275 0.96191 1.19920 0.83573 0.98162 0.92207 0.90100 1.58773 1.67217 1.04874 1.03768 1.22016 0.98171 1.07210 0.90972 1.21420 0.82574 1.07144 0.98733 1.41615 1.07630 1.65165 1.05818 0.75360 1.18308 0.95529 1.03573 0.83924 1.19922 0.96815 1.07452 0.91880 1.20739 0.96275 1.00264 0.94763 1.20606 0.92630 1.04958 0.99349 1.20465 0.99967 0.96441 0.90843 1.19156 0.91702 1.05789 0.93801 0.93075 0.96932 0.96735 0.86480 0.85674 0.81976 0.86822 0.86207 0.86216 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.70 13.96 55.43 0.77 -27.93 16 2 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 3 Si 0.87 22.47 27.47 -169.99 -4.67 17.80 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 7 C -0.49 -14.21 9.39 -34.45 -0.32 -14.53 16 8 H 0.08 2.52 7.99 -52.48 -0.42 2.11 16 9 C 0.00 0.06 3.67 -27.89 -0.10 -0.04 16 10 C 0.17 3.47 3.21 -68.86 -0.22 3.25 16 11 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 12 N -0.82 -14.79 8.64 -5.65 -0.05 -14.84 16 13 C -0.17 -3.04 5.46 -102.71 -0.56 -3.60 16 14 C 0.03 0.37 11.06 -16.73 -0.19 0.18 16 15 N -0.60 -7.62 6.07 -10.65 -0.06 -7.68 16 16 H 0.41 3.70 8.96 -40.82 -0.37 3.34 16 17 C 0.09 1.40 7.28 -83.98 -0.61 0.79 16 18 C -0.14 -1.79 10.08 -39.43 -0.40 -2.19 16 19 C -0.10 -1.25 10.01 -39.54 -0.40 -1.65 16 20 C -0.16 -2.14 9.97 -39.94 -0.40 -2.54 16 21 C -0.06 -0.96 10.05 -39.64 -0.40 -1.35 16 22 C -0.10 -1.71 6.35 -105.14 -0.67 -2.38 16 23 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 24 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 25 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 26 H 0.32 4.89 9.06 -39.29 -0.36 4.54 16 27 H 0.33 5.47 8.01 -39.29 -0.31 5.16 16 28 H 0.16 1.86 7.31 -52.49 -0.38 1.48 16 29 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -33.60 273.68 -8.13 -41.73 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.89 Total: 9.10 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -4.36 Total: -22.30 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.66 Total: -50.45 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.60 -8.13 -41.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.169 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds