Wall clock time and date at job start Mon Mar 30 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99374 * 2 1 4 4 H 1.48500 * 109.47096 * 269.99778 * 3 2 1 5 5 H 1.48501 * 109.47527 * 29.99878 * 3 2 1 6 6 H 1.48507 * 109.46878 * 150.00128 * 3 2 1 7 7 C 1.37867 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00161 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00217 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47440 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47437 * 55.00154 * 10 9 7 12 12 N 1.46905 * 109.46982 * 294.99988 * 10 9 7 13 13 C 1.50701 * 109.47209 * 175.00074 * 10 9 7 14 14 C 1.34241 * 126.50105 * 100.02486 * 13 10 9 15 15 N 1.36830 * 109.93178 * 179.97438 * 14 13 10 16 16 H 0.96993 * 125.06361 * 179.97438 * 15 14 13 17 17 C 1.37694 * 109.87033 * 359.97438 * 15 14 13 18 18 C 1.39133 * 133.50725 * 180.02562 * 17 15 14 19 19 C 1.37742 * 119.77580 * 179.97438 * 18 17 15 20 20 C 1.38835 * 120.67224 * 0.02562 * 19 18 17 21 21 C 1.36632 * 120.52334 * 359.97438 * 20 19 18 22 22 C 1.39626 * 119.76083 * 0.26109 * 21 20 19 23 23 H 0.96998 * 120.00342 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47259 * 59.99747 * 9 7 2 25 25 H 1.09000 * 109.47294 * 300.00094 * 9 7 2 26 26 H 1.00899 * 110.99890 * 176.04702 * 12 10 9 27 27 H 1.00905 * 110.99966 * 300.00083 * 12 10 9 28 28 H 1.07997 * 125.03730 * 359.97289 * 14 13 10 29 29 H 1.07992 * 120.10896 * 359.97438 * 18 17 15 30 30 H 1.08005 * 119.66612 * 180.02562 * 19 18 17 31 31 H 1.07994 * 119.74119 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.11467 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 1 3.5868 -3.1756 -0.8415 12 7 3.6336 -3.2928 1.2556 13 6 5.5236 -2.6381 -0.1243 14 6 6.4073 -2.7957 0.8738 15 7 7.6825 -2.7411 0.3807 16 1 8.4895 -2.8291 0.9116 17 6 7.6495 -2.5426 -0.9815 18 6 8.6352 -2.4147 -1.9550 19 6 8.2763 -2.2190 -3.2703 20 6 6.9390 -2.1473 -3.6364 21 6 5.9547 -2.2702 -2.6967 22 6 6.2961 -2.4642 -1.3568 23 1 -0.4850 0.8400 -0.0004 24 1 3.8753 -0.6794 0.8894 25 1 3.8746 -0.6806 -0.8905 26 1 3.9027 -4.2653 1.2534 27 1 4.0247 -2.8113 2.0514 28 1 6.1500 -2.9436 1.9122 29 1 9.6782 -2.4687 -1.6802 30 1 9.0429 -2.1204 -4.0247 31 1 6.6745 -1.9938 -4.6721 32 1 4.9165 -2.2129 -2.9887 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259608897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:08 Heat of formation + Delta-G solvation = 29.561744 kcal Electronic energy + Delta-G solvation = -15371.249125 eV Core-core repulsion = 12909.700248 eV Total energy + Delta-G solvation = -2461.548878 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18038 -38.00634 -37.00721 -34.50861 -32.37900 -30.82110 -30.26146 -29.30408 -26.01024 -23.73129 -22.71384 -22.54909 -20.04575 -19.03618 -18.44378 -17.32076 -16.74506 -16.32668 -16.15853 -15.35370 -15.18933 -14.85434 -14.68781 -14.58221 -14.22006 -13.49092 -13.27412 -12.84906 -12.58014 -12.48302 -12.20967 -12.04524 -11.78280 -11.69491 -11.25235 -10.69832 -10.41985 -9.39611 -9.12139 -8.51489 -8.18863 -6.18099 0.22991 0.72849 1.35389 1.35840 1.47932 1.75192 2.27154 2.40376 3.01399 3.14827 3.82550 3.90390 4.03202 4.15320 4.27657 4.46212 4.50717 4.63670 4.76090 4.85639 4.91925 5.06891 5.21167 5.25308 5.52764 5.59994 5.69955 5.72903 5.83004 5.87631 6.25749 6.40909 6.57415 6.77167 6.87541 6.91965 7.42984 8.98453 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.007711 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.745437 B = 3630.229659 C = 4062.011143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.494 4.494 8 H 0.038 0.962 9 C 0.011 3.989 10 C 0.189 3.811 11 H 0.053 0.947 12 N -0.832 5.832 13 C -0.220 4.220 14 C 0.055 3.945 15 N -0.582 5.582 16 H 0.431 0.569 17 C 0.081 3.919 18 C -0.132 4.132 19 C -0.102 4.102 20 C -0.152 4.152 21 C -0.097 4.097 22 C -0.132 4.132 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.007 0.993 26 H 0.342 0.658 27 H 0.341 0.659 28 H 0.193 0.807 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.851 -5.286 -1.404 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.195 4.195 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.533 4.533 8 H 0.057 0.943 9 C -0.027 4.027 10 C 0.077 3.923 11 H 0.071 0.929 12 N -0.361 5.361 13 C -0.229 4.229 14 C -0.072 4.072 15 N -0.186 5.186 16 H 0.271 0.729 17 C -0.027 4.027 18 C -0.153 4.153 19 C -0.121 4.121 20 C -0.171 4.171 21 C -0.116 4.116 22 C -0.137 4.137 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.025 0.975 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.210 0.790 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.156 0.844 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.046 -5.025 -1.482 21.688 hybrid contribution 0.777 0.605 0.315 1.034 sum 21.823 -4.421 -1.167 22.297 Atomic orbital electron populations 1.70073 1.08011 1.27538 1.54145 1.25897 0.95508 1.02848 0.95228 0.85776 0.79303 0.79391 0.78787 1.19777 1.20972 1.17853 1.21325 0.91450 0.92933 1.47546 0.94334 1.19428 0.94200 0.93531 0.95506 1.19341 0.85845 0.95032 0.92119 0.92896 1.58634 1.67977 1.06125 1.03403 1.21625 0.96692 1.11879 0.92708 1.21753 0.82576 1.03642 0.99217 1.41577 1.07960 1.63742 1.05353 0.72880 1.18553 0.94959 1.04132 0.85052 1.20380 0.98081 1.05385 0.91446 1.21184 0.96253 0.98984 0.95697 1.20917 0.93059 1.03382 0.99758 1.20523 0.99833 0.99451 0.91789 1.19432 0.93276 1.06956 0.94031 0.92897 0.96844 0.97516 0.84494 0.84500 0.79026 0.83321 0.82576 0.84368 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.31 13.96 21.44 0.30 -62.01 16 2 C 0.00 0.02 5.47 84.65 0.46 0.49 16 3 Si 0.94 46.91 27.47 68.60 1.88 48.80 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.25 -11.98 6.54 99.48 0.65 -11.32 16 7 C -0.49 -29.67 9.39 25.60 0.24 -29.43 16 8 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 9 C 0.01 0.56 3.67 29.85 0.11 0.67 16 10 C 0.19 7.79 3.21 44.17 0.14 7.93 16 11 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 12 N -0.83 -30.15 8.64 -171.79 -1.48 -31.63 16 13 C -0.22 -7.57 5.46 -18.62 -0.10 -7.68 16 14 C 0.05 1.42 11.06 83.00 0.92 2.34 16 15 N -0.58 -12.80 6.07 -187.60 -1.14 -13.94 16 16 H 0.43 5.88 8.96 -92.71 -0.83 5.05 16 17 C 0.08 2.19 7.28 39.03 0.28 2.48 16 18 C -0.13 -2.88 10.08 22.37 0.23 -2.65 16 19 C -0.10 -2.17 10.01 22.30 0.22 -1.95 16 20 C -0.15 -3.96 9.97 22.04 0.22 -3.74 16 21 C -0.10 -3.24 10.05 22.23 0.22 -3.02 16 22 C -0.13 -4.50 6.35 -20.20 -0.13 -4.63 16 23 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 24 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 25 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 26 H 0.34 10.21 9.06 -89.69 -0.81 9.40 16 27 H 0.34 10.94 8.01 -89.69 -0.72 10.22 16 28 H 0.19 3.69 7.31 -2.91 -0.02 3.67 16 29 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.11 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -75.56 273.68 1.12 -74.44 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -1.26 Total: 23.55 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 2.82 Total: -39.21 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -2.32 Total: -107.58 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.88 Total: 48.80 kcal Total: -75.56 1.12 -74.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259608897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.998 kcal (2) G-P(sol) polarization free energy of solvation -75.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds