Wall clock time and date at job start Mon Mar 30 2020 03:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37795 * 120.11002 * 2 1 4 4 C 1.38790 * 120.66709 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.73394 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47088 * 339.99405 * 5 4 3 7 7 N 1.46904 * 109.46983 * 219.99878 * 5 4 3 8 8 C 1.50701 * 109.47151 * 100.00266 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 C 1.36662 * 120.52638 * 0.29528 * 4 3 2 17 17 C 1.39589 * 119.76595 * 359.46030 * 16 4 3 18 18 C 1.46492 * 134.03541 * 180.20902 * 17 16 4 19 19 C 1.34235 * 106.99892 * 180.27304 * 18 17 16 20 20 N 1.36837 * 109.93874 * 0.02562 * 19 18 17 21 21 H 0.96996 * 125.06113 * 179.97438 * 20 19 18 22 22 C 1.37692 * 109.87303 * 359.97438 * 20 19 18 23 23 H 1.09005 * 109.47222 * 90.00283 * 1 2 3 24 24 H 1.09001 * 109.47040 * 209.99834 * 1 2 3 25 25 H 1.08998 * 109.47109 * 329.99699 * 1 2 3 26 26 H 1.07994 * 119.66451 * 359.97438 * 3 2 1 27 27 H 1.00906 * 110.99862 * 300.00217 * 7 5 4 28 28 H 1.00899 * 111.00096 * 63.95105 * 7 5 4 29 29 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 30 30 H 1.08000 * 120.11709 * 179.72808 * 16 4 3 31 31 H 1.08000 * 126.49744 * 0.30247 * 18 17 16 32 32 H 1.08001 * 125.02880 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5860 1.2055 0.0005 5 6 4.3207 2.5213 0.0011 6 1 3.6549 3.3094 -0.3506 7 7 5.4862 2.4318 -0.8887 8 6 4.7806 2.8393 1.4006 9 1 4.5622 2.1570 2.2088 10 6 5.4745 4.0042 1.6501 11 7 5.7401 4.8352 0.6660 12 14 6.0377 4.4021 3.3862 13 1 6.9474 3.3322 3.8690 14 1 6.7575 5.7011 3.3875 15 1 4.8566 4.4894 4.2821 16 6 4.2916 0.0351 -0.0050 17 6 3.6117 -1.1840 0.0002 18 6 4.0355 -2.5863 0.0007 19 6 2.9202 -3.3333 0.0009 20 7 1.8167 -2.5242 0.0000 21 1 0.8979 -2.8351 -0.0004 22 6 2.2048 -1.2031 -0.0002 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6546 2.1251 -0.0004 27 1 6.1192 1.7076 -0.5837 28 1 5.2005 2.2831 -1.8449 29 1 6.2280 5.6549 0.8417 30 1 5.3714 0.0534 -0.0090 31 1 5.0524 -2.9500 0.0012 32 1 2.8973 -4.4130 0.0016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259924959.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:33 Heat of formation + Delta-G solvation = 53.137067 kcal Electronic energy + Delta-G solvation = -15420.804910 eV Core-core repulsion = 12960.278335 eV Total energy + Delta-G solvation = -2460.526575 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81336 -37.19027 -34.26977 -32.46047 -31.16014 -29.14521 -28.45902 -26.20056 -25.77687 -22.65215 -21.36574 -20.01532 -19.50267 -17.44429 -16.22192 -15.65793 -14.72014 -14.27373 -14.25127 -14.08677 -13.51991 -12.96610 -12.90203 -12.86068 -12.39037 -12.06881 -11.96526 -11.44854 -11.16582 -10.82687 -10.69862 -10.52229 -10.20936 -9.66944 -9.13797 -9.05152 -8.34596 -7.54526 -7.18542 -6.87237 -5.79240 -3.93429 1.64431 2.30197 3.06751 3.40616 3.44621 3.44822 3.48178 4.46336 4.62188 5.07257 5.17473 5.32535 5.45469 5.53112 5.66324 5.75836 5.91495 6.01569 6.06206 6.18307 6.41175 6.48457 6.55092 6.67720 7.11860 7.14959 7.24533 7.26904 7.73766 7.78031 7.85880 7.99778 8.30397 8.74336 9.11745 9.25389 9.74621 11.24952 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.007081 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.129361 B = 3953.288617 C = 4134.158764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.112 4.112 3 C -0.088 4.088 4 C -0.094 4.094 5 C 0.257 3.743 6 H 0.044 0.956 7 N -0.810 5.810 8 C -0.528 4.528 9 H 0.052 0.948 10 C 0.083 3.917 11 N -0.849 5.849 12 Si 0.883 3.117 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.279 1.279 16 C -0.083 4.083 17 C -0.105 4.105 18 C -0.206 4.206 19 C 0.034 3.966 20 N -0.602 5.602 21 H 0.407 0.593 22 C 0.080 3.920 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.317 0.683 28 H 0.297 0.703 29 H 0.255 0.745 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 -13.294 -2.481 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C -0.108 4.108 4 C -0.097 4.097 5 C 0.148 3.852 6 H 0.062 0.938 7 N -0.336 5.336 8 C -0.566 4.566 9 H 0.071 0.929 10 C -0.123 4.123 11 N -0.484 5.484 12 Si 0.710 3.290 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.204 1.204 16 C -0.102 4.102 17 C -0.109 4.109 18 C -0.232 4.232 19 C -0.091 4.091 20 N -0.205 5.205 21 H 0.243 0.757 22 C -0.026 4.026 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.130 0.870 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.856 -12.390 -2.314 14.852 hybrid contribution -0.382 -1.021 0.885 1.404 sum -8.238 -13.411 -1.429 15.804 Atomic orbital electron populations 1.20612 0.92152 1.01939 1.01366 1.18796 0.94680 0.90422 1.07608 1.20753 0.94253 0.95832 0.99971 1.21225 0.93748 0.98749 0.96023 1.18128 0.87510 0.86247 0.93364 0.93807 1.59231 1.18394 1.53198 1.02749 1.20838 1.38138 1.05713 0.91949 0.92942 1.24945 0.95350 0.96076 0.95955 1.70096 1.37902 1.10144 1.30260 0.86847 0.78862 0.77468 0.85774 1.20375 1.21389 1.20448 1.20063 0.99405 0.89864 1.00872 1.19218 0.91958 0.93490 1.06282 1.21665 0.97779 0.91318 1.12416 1.21617 0.85881 0.95843 1.05800 1.41627 1.07874 1.04315 1.66727 0.75721 1.17969 0.93850 0.84122 1.06638 0.92059 0.93161 0.91390 0.86133 0.87045 0.89265 0.93488 0.86578 0.84251 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.02 36.00 0.36 -0.98 16 2 C -0.11 -1.93 5.89 -104.47 -0.62 -2.54 16 3 C -0.09 -1.74 9.29 -39.54 -0.37 -2.11 16 4 C -0.09 -2.06 4.86 -104.99 -0.51 -2.57 16 5 C 0.26 6.48 2.84 -70.01 -0.20 6.28 16 6 H 0.04 1.20 7.99 -51.93 -0.41 0.79 16 7 N -0.81 -19.43 8.36 -6.65 -0.06 -19.48 16 8 C -0.53 -14.78 8.70 -34.44 -0.30 -15.08 16 9 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 10 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 11 N -0.85 -25.05 12.78 55.43 0.71 -24.34 16 12 Si 0.88 21.74 29.54 -169.99 -5.02 16.72 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C -0.08 -1.71 9.27 -39.65 -0.37 -2.08 16 17 C -0.11 -1.97 6.37 -105.14 -0.67 -2.64 16 18 C -0.21 -3.14 11.08 -37.67 -0.42 -3.56 16 19 C 0.03 0.43 11.81 -16.73 -0.20 0.23 16 20 N -0.60 -7.93 6.07 -10.65 -0.06 -8.00 16 21 H 0.41 3.99 8.87 -40.82 -0.36 3.63 16 22 C 0.08 1.36 6.95 -83.99 -0.58 0.78 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.56 7.99 -51.93 -0.42 0.14 16 25 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.12 2.26 8.02 -52.49 -0.42 1.84 16 27 H 0.32 7.29 7.30 -39.29 -0.29 7.00 16 28 H 0.30 6.43 9.06 -39.29 -0.36 6.07 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.12 2.36 6.60 -52.49 -0.35 2.01 16 31 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -31.82 274.78 -8.09 -39.91 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -3.83 Total: 13.05 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -3.96 Total: -22.00 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.59 Total: -51.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.82 -8.09 -39.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924959.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.044 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds