Wall clock time and date at job start Mon Mar 30 2020 03:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37795 * 120.11002 * 2 1 4 4 C 1.38790 * 120.66709 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.73394 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47088 * 339.99405 * 5 4 3 7 7 N 1.46904 * 109.46983 * 219.99878 * 5 4 3 8 8 C 1.50701 * 109.47151 * 100.00266 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 C 1.36662 * 120.52638 * 0.29528 * 4 3 2 17 17 C 1.39589 * 119.76595 * 359.46030 * 16 4 3 18 18 C 1.46492 * 134.03541 * 180.20902 * 17 16 4 19 19 C 1.34235 * 106.99892 * 180.27304 * 18 17 16 20 20 N 1.36837 * 109.93874 * 0.02562 * 19 18 17 21 21 H 0.96996 * 125.06113 * 179.97438 * 20 19 18 22 22 C 1.37692 * 109.87303 * 359.97438 * 20 19 18 23 23 H 1.09005 * 109.47222 * 90.00283 * 1 2 3 24 24 H 1.09001 * 109.47040 * 209.99834 * 1 2 3 25 25 H 1.08998 * 109.47109 * 329.99699 * 1 2 3 26 26 H 1.07994 * 119.66451 * 359.97438 * 3 2 1 27 27 H 1.00906 * 110.99862 * 300.00217 * 7 5 4 28 28 H 1.00899 * 111.00096 * 63.95105 * 7 5 4 29 29 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 30 30 H 1.08000 * 120.11709 * 179.72808 * 16 4 3 31 31 H 1.08000 * 126.49744 * 0.30247 * 18 17 16 32 32 H 1.08001 * 125.02880 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5860 1.2055 0.0005 5 6 4.3207 2.5213 0.0011 6 1 3.6549 3.3094 -0.3506 7 7 5.4862 2.4318 -0.8887 8 6 4.7806 2.8393 1.4006 9 1 4.5622 2.1570 2.2088 10 6 5.4745 4.0042 1.6501 11 7 5.7401 4.8352 0.6660 12 14 6.0377 4.4021 3.3862 13 1 6.9474 3.3322 3.8690 14 1 6.7575 5.7011 3.3875 15 1 4.8566 4.4894 4.2821 16 6 4.2916 0.0351 -0.0050 17 6 3.6117 -1.1840 0.0002 18 6 4.0355 -2.5863 0.0007 19 6 2.9202 -3.3333 0.0009 20 7 1.8167 -2.5242 0.0000 21 1 0.8979 -2.8351 -0.0004 22 6 2.2048 -1.2031 -0.0002 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6546 2.1251 -0.0004 27 1 6.1192 1.7076 -0.5837 28 1 5.2005 2.2831 -1.8449 29 1 6.2280 5.6549 0.8417 30 1 5.3714 0.0534 -0.0090 31 1 5.0524 -2.9500 0.0012 32 1 2.8973 -4.4130 0.0016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259924959.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:32 Heat of formation + Delta-G solvation = 31.463768 kcal Electronic energy + Delta-G solvation = -15421.744734 eV Core-core repulsion = 12960.278335 eV Total energy + Delta-G solvation = -2461.466400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.06752 -38.69398 -35.96077 -34.09802 -32.98570 -30.47290 -29.81491 -27.85842 -27.46331 -24.42342 -22.65952 -21.21723 -21.09105 -18.83758 -18.26563 -16.95686 -16.64723 -16.02572 -15.77910 -15.46868 -15.06922 -14.33068 -14.19047 -14.03950 -13.91366 -13.52444 -13.35434 -13.11812 -12.87807 -12.66495 -12.45660 -12.22913 -11.67566 -11.62125 -11.08635 -10.53324 -10.38301 -9.03842 -8.82246 -8.38035 -7.95231 -6.17582 0.29915 0.82733 1.42581 1.44071 1.51745 1.91022 2.36224 2.47361 3.05973 3.26934 3.88939 4.05318 4.18090 4.32464 4.43200 4.51225 4.56803 4.76926 4.78916 4.85157 4.97574 5.07020 5.21004 5.32441 5.42635 5.67653 5.77678 5.84774 5.90697 6.06715 6.20420 6.38993 6.68723 6.85325 7.11812 7.29016 7.54290 9.07123 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.007081 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.129361 B = 3953.288617 C = 4134.158764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.114 4.114 5 C 0.263 3.737 6 H 0.009 0.991 7 N -0.818 5.818 8 C -0.542 4.542 9 H 0.040 0.960 10 C 0.035 3.965 11 N -0.881 5.881 12 Si 0.947 3.053 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.273 1.273 16 C -0.102 4.102 17 C -0.127 4.127 18 C -0.243 4.243 19 C 0.073 3.927 20 N -0.585 5.585 21 H 0.428 0.572 22 C 0.067 3.933 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.321 0.679 28 H 0.309 0.691 29 H 0.256 0.744 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -16.236 -1.900 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.118 4.118 5 C 0.153 3.847 6 H 0.027 0.973 7 N -0.345 5.345 8 C -0.580 4.580 9 H 0.058 0.942 10 C -0.169 4.169 11 N -0.517 5.517 12 Si 0.772 3.228 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.199 1.199 16 C -0.121 4.121 17 C -0.132 4.132 18 C -0.268 4.268 19 C -0.054 4.054 20 N -0.190 5.190 21 H 0.268 0.732 22 C -0.040 4.040 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.170 0.830 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.378 -15.355 -1.733 18.075 hybrid contribution 0.008 -0.279 0.659 0.716 sum -9.370 -15.634 -1.074 18.259 Atomic orbital electron populations 1.20697 0.88821 1.03388 1.02958 1.19130 0.96964 0.89465 1.04500 1.20767 0.93564 0.97125 1.02641 1.20846 0.94753 0.97395 0.98785 1.17778 0.87419 0.87375 0.92110 0.97298 1.59067 1.18479 1.53587 1.03387 1.21106 1.38148 1.05672 0.93103 0.94156 1.25679 0.95460 0.95910 0.99809 1.70221 1.38721 1.10509 1.32256 0.85826 0.78471 0.77356 0.81102 1.20010 1.20670 1.19865 1.19973 0.98879 0.90715 1.02544 1.19598 0.93212 0.94392 1.05959 1.21946 0.99811 0.89821 1.15219 1.22418 0.84254 0.97855 1.00836 1.41686 1.09457 1.02719 1.65114 0.73238 1.18063 0.93374 0.85817 1.06722 0.90218 0.90600 0.91099 0.86568 0.86622 0.88011 0.93524 0.87770 0.82990 0.76625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 10.02 71.23 0.71 -1.64 16 2 C -0.10 -3.25 5.89 -19.77 -0.12 -3.37 16 3 C -0.12 -4.95 9.29 22.30 0.21 -4.74 16 4 C -0.11 -5.27 4.86 -20.10 -0.10 -5.37 16 5 C 0.26 14.06 2.84 43.42 0.12 14.19 16 6 H 0.01 0.54 7.99 -2.39 -0.02 0.52 16 7 N -0.82 -41.38 8.36 -174.94 -1.46 -42.84 16 8 C -0.54 -31.67 8.70 25.60 0.22 -31.45 16 9 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 10 C 0.03 2.02 5.39 84.65 0.46 2.48 16 11 N -0.88 -53.60 12.78 21.45 0.27 -53.32 16 12 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 13 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 15 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 16 C -0.10 -4.37 9.27 22.23 0.21 -4.17 16 17 C -0.13 -4.67 6.37 -20.20 -0.13 -4.80 16 18 C -0.24 -6.81 11.08 23.51 0.26 -6.55 16 19 C 0.07 1.45 11.81 83.00 0.98 2.43 16 20 N -0.58 -12.78 6.07 -187.60 -1.14 -13.92 16 21 H 0.43 6.01 8.87 -92.71 -0.82 5.18 16 22 C 0.07 2.15 6.95 39.03 0.27 2.42 16 23 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.08 1.36 7.99 -2.39 -0.02 1.34 16 25 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 26 H 0.12 4.65 8.02 -2.91 -0.02 4.62 16 27 H 0.32 15.59 7.30 -89.69 -0.65 14.94 16 28 H 0.31 14.12 9.06 -89.69 -0.81 13.31 16 29 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.10 4.52 6.60 -2.91 -0.02 4.50 16 31 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.22 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -71.89 274.78 1.67 -70.22 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -1.13 Total: 32.79 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 3.10 Total: -40.55 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -2.33 Total: -110.08 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.89 1.67 -70.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924959.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.685 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds