Wall clock time and date at job start Mon Mar 30 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38662 * 120.29287 * 2 1 4 4 N 1.31588 * 121.58388 * 179.97438 * 3 2 1 5 5 C 1.32659 * 121.66874 * 0.02776 * 4 3 2 6 6 C 1.40792 * 119.83110 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.29551 * 179.97438 * 2 1 3 8 8 C 1.46391 * 106.21613 * 180.02562 * 6 5 4 9 9 C 1.50703 * 126.56490 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47200 * 84.99880 * 9 8 6 11 11 H 1.07997 * 120.00242 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00259 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99654 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47263 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47198 * 119.99959 * 14 12 10 17 17 H 1.48506 * 109.46848 * 240.00056 * 14 12 10 18 18 C 1.34230 * 106.86586 * 359.75268 * 8 6 5 19 19 N 1.36915 * 109.91253 * 0.39860 * 18 8 6 20 20 C 1.46499 * 124.98733 * 179.84823 * 19 18 8 21 21 H 1.09004 * 109.46742 * 270.01920 * 1 2 3 22 22 H 1.09002 * 109.47339 * 30.02045 * 1 2 3 23 23 H 1.08998 * 109.47213 * 150.02089 * 1 2 3 24 24 H 1.08005 * 119.21028 * 0.02562 * 3 2 1 25 25 H 1.08002 * 120.97465 * 0.03896 * 7 2 1 26 26 H 1.09002 * 109.46990 * 205.00197 * 9 8 6 27 27 H 1.08998 * 109.47113 * 324.99685 * 9 8 6 28 28 H 0.96997 * 119.99699 * 179.97438 * 13 12 10 29 29 H 1.07996 * 125.04092 * 180.22673 * 18 8 6 30 30 H 1.09002 * 109.47391 * 269.69668 * 20 19 18 31 31 H 1.09001 * 109.46813 * 149.69725 * 20 19 18 32 32 H 1.09004 * 109.47041 * 29.69852 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1973 0.0000 4 7 3.5220 1.2269 0.0005 5 6 4.2437 0.1139 0.0005 6 6 3.6000 -1.1383 0.0005 7 6 2.2042 -1.1933 0.0005 8 6 4.6632 -2.1446 0.0011 9 6 4.4831 -3.6408 0.0018 10 6 4.3003 -4.1255 -1.4133 11 1 4.3136 -3.4207 -2.2315 12 6 4.1171 -5.4689 -1.6636 13 7 4.1015 -6.3273 -0.6673 14 14 3.8912 -6.0698 -3.4179 15 1 3.9477 -4.9138 -4.3483 16 1 4.9721 -7.0305 -3.7551 17 1 2.5734 -6.7427 -3.5447 18 6 5.8290 -1.4793 -0.0041 19 7 5.5961 -0.1302 0.0009 20 6 6.6359 0.9018 0.0007 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6583 2.1279 0.0004 25 1 1.6850 -2.1403 0.0003 26 1 5.3644 -4.1126 0.4365 27 1 3.6040 -3.9007 0.5914 28 1 3.9722 -7.2724 -0.8434 29 1 6.8058 -1.9400 -0.0086 30 1 6.8935 1.1584 1.0283 31 1 6.2670 1.7891 -0.5138 32 1 7.5209 0.5257 -0.5127 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259941805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:50 Heat of formation + Delta-G solvation = 41.629022 kcal Electronic energy + Delta-G solvation = -15314.976067 eV Core-core repulsion = 12853.950466 eV Total energy + Delta-G solvation = -2461.025601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.39981 -39.03855 -35.78128 -34.38448 -33.54301 -31.25769 -29.76666 -28.08267 -26.42331 -24.45404 -24.36460 -22.16627 -20.26293 -18.47852 -18.05686 -17.53944 -16.60080 -16.46950 -16.33329 -14.97658 -14.66816 -14.42594 -14.31462 -14.06223 -13.93086 -13.56065 -13.45412 -13.23326 -13.00042 -12.70025 -12.62262 -12.28050 -12.20635 -11.76477 -11.48481 -10.87253 -10.58973 -10.26062 -9.10050 -8.62903 -8.11879 -6.28637 0.13736 0.47607 1.38715 1.39286 1.52407 1.75846 1.87510 2.43340 2.98032 3.13251 3.51549 3.81573 3.93713 4.07008 4.19101 4.38231 4.41929 4.47470 4.70052 4.76618 4.82277 4.93929 4.95915 5.05893 5.23842 5.35960 5.48022 5.58236 5.71855 5.78805 5.88413 6.18471 6.27771 6.37932 6.83087 7.08455 7.39370 8.92461 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.008205 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.597686 B = 3411.817738 C = 4200.370396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.175 4.175 3 C 0.131 3.869 4 N -0.511 5.511 5 C 0.256 3.744 6 C -0.172 4.172 7 C -0.045 4.045 8 C -0.152 4.152 9 C 0.096 3.904 10 C -0.520 4.520 11 H 0.046 0.954 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.961 3.039 15 H -0.270 1.270 16 H -0.274 1.274 17 H -0.277 1.277 18 C 0.041 3.959 19 N -0.479 5.479 20 C 0.082 3.918 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.197 0.803 25 H 0.120 0.880 26 H 0.010 0.990 27 H -0.004 1.004 28 H 0.265 0.735 29 H 0.194 0.806 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 14.582 1.116 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.178 4.178 3 C -0.035 4.035 4 N -0.225 5.225 5 C 0.024 3.976 6 C -0.179 4.179 7 C -0.071 4.071 8 C -0.158 4.158 9 C 0.058 3.942 10 C -0.558 4.558 11 H 0.064 0.936 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.785 3.215 15 H -0.195 1.195 16 H -0.199 1.199 17 H -0.202 1.202 18 C -0.082 4.082 19 N -0.166 5.166 20 C -0.058 4.058 21 H 0.099 0.901 22 H 0.111 0.889 23 H 0.080 0.920 24 H 0.213 0.787 25 H 0.138 0.862 26 H 0.028 0.972 27 H 0.014 0.986 28 H 0.074 0.926 29 H 0.211 0.789 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.596 15.409 1.158 15.464 hybrid contribution -0.364 -1.707 -0.673 1.871 sum -0.960 13.702 0.485 13.744 Atomic orbital electron populations 1.20643 0.87544 1.03760 1.03217 1.20927 0.99105 0.92595 1.05218 1.22936 0.87261 0.98649 0.94681 1.66497 1.08810 1.28831 1.18335 1.18568 0.85815 0.90110 1.03104 1.20175 0.94836 0.94368 1.08548 1.21076 0.91771 0.99028 0.95221 1.20910 0.91699 0.95815 1.07418 1.17359 0.95414 0.85695 0.95721 1.21379 1.49059 0.92348 0.93038 0.93602 1.25852 0.94992 0.96951 1.01356 1.70077 1.51104 1.02909 1.32861 0.85467 0.78061 0.78221 0.79713 1.19491 1.19905 1.20210 1.21861 0.99916 0.80737 1.05685 1.43751 1.03099 1.06403 1.63328 1.22132 0.89727 0.90019 1.03942 0.90132 0.88937 0.92018 0.78659 0.86230 0.97201 0.98560 0.92621 0.78866 0.90261 0.89874 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 10.03 71.24 0.71 -1.29 16 2 C -0.17 -5.36 5.90 -19.77 -0.12 -5.48 16 3 C 0.13 3.80 10.82 84.83 0.92 4.72 16 4 N -0.51 -17.96 10.39 -192.73 -2.00 -19.96 16 5 C 0.26 10.11 7.90 133.93 1.06 11.17 16 6 C -0.17 -7.63 6.37 -20.18 -0.13 -7.75 16 7 C -0.04 -1.78 9.90 22.61 0.22 -1.56 16 8 C -0.15 -7.14 5.51 -18.65 -0.10 -7.25 16 9 C 0.10 5.27 5.51 29.10 0.16 5.43 16 10 C -0.52 -30.38 9.09 25.60 0.23 -30.15 16 11 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 14 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 C 0.04 1.60 11.21 82.98 0.93 2.53 16 19 N -0.48 -16.74 3.17 -545.14 -1.73 -18.47 16 20 C 0.08 1.90 11.07 127.77 1.41 3.32 16 21 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 22 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 23 H 0.06 1.37 8.09 -2.39 -0.02 1.35 16 24 H 0.20 3.77 8.06 -2.91 -0.02 3.74 16 25 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.19 6.25 8.06 -2.91 -0.02 6.22 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.87 8.13 -2.38 -0.02 1.85 16 Total: -1.00 -71.92 281.71 5.45 -66.47 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.10 Total: 6.39 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 5.77 Total: -25.48 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -3.45 Total: -94.34 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.92 5.45 -66.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.102 kcal (2) G-P(sol) polarization free energy of solvation -71.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds