Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.38884 * 125.37131 * 269.99868 * 3 2 1 5 5 C 1.40894 * 126.98995 * 0.02562 * 4 3 2 6 6 H 1.07999 * 119.99602 * 329.28590 * 5 4 3 7 7 C 1.39759 * 120.00249 * 149.27808 * 5 4 3 8 8 N 1.31038 * 119.99829 * 341.25734 * 7 5 4 9 9 Si 1.86798 * 120.00145 * 161.24940 * 7 5 4 10 10 H 1.48504 * 109.47055 * 60.00180 * 9 7 5 11 11 H 1.48497 * 109.47163 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47355 * 300.00720 * 9 7 5 13 13 C 1.47560 * 106.02199 * 180.02562 * 4 3 2 14 14 C 1.39264 * 134.09255 * 179.97438 * 13 4 3 15 15 C 1.38444 * 118.07056 * 180.02562 * 14 13 4 16 16 C 1.38508 * 119.28605 * 0.25081 * 15 14 13 17 17 N 1.31652 * 121.53512 * 359.45941 * 16 15 14 18 18 C 1.32714 * 121.73112 * 0.56613 * 17 16 15 19 19 N 1.35767 * 125.36946 * 90.02648 * 3 2 1 20 20 C 1.46500 * 124.62557 * 359.97438 * 19 3 2 21 21 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47431 * 299.99509 * 1 2 3 23 23 H 1.09001 * 109.47345 * 60.00295 * 1 2 3 24 24 H 1.08999 * 109.47350 * 239.99835 * 2 1 3 25 25 H 1.09001 * 109.47345 * 119.99705 * 2 1 3 26 26 H 0.96999 * 119.99517 * 185.10278 * 8 7 5 27 27 H 1.07996 * 120.96351 * 0.02562 * 14 13 4 28 28 H 1.08005 * 120.35745 * 179.97438 * 15 14 13 29 29 H 1.08009 * 119.23728 * 179.72191 * 16 15 14 30 30 H 1.09004 * 109.47278 * 270.00107 * 20 19 3 31 31 H 1.09001 * 109.47736 * 29.99821 * 20 19 3 32 32 H 1.08995 * 109.47010 * 150.00518 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3002 2.1788 -1.1325 5 6 2.1575 1.7765 -2.4752 6 1 2.2975 0.7405 -2.7462 7 6 1.8345 2.7180 -3.4563 8 7 1.3108 3.8689 -3.1127 9 14 2.1497 2.3357 -5.2574 10 1 1.3777 1.1294 -5.6499 11 1 1.7239 3.4891 -6.0901 12 1 3.5987 2.0848 -5.4640 13 6 2.7648 3.4913 -0.6436 14 6 3.1807 4.6655 -1.2662 15 6 3.5579 5.7295 -0.4648 16 6 3.5142 5.5893 0.9124 17 7 3.1120 4.4706 1.4782 18 6 2.7396 3.4193 0.7590 19 7 2.2946 2.1616 1.1071 20 6 2.1277 1.6891 2.4837 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.0183 4.4920 -3.7962 27 1 3.2082 4.7438 -2.3430 28 1 3.8871 6.6575 -0.9088 29 1 3.8129 6.4183 1.5369 30 1 1.1175 1.9147 2.8254 31 1 2.2915 0.6121 2.5207 32 1 2.8497 2.1888 3.1294 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = 57.459001 kcal Electronic energy + Delta-G solvation = -15959.259120 eV Core-core repulsion = 13498.919958 eV Total energy + Delta-G solvation = -2460.339162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07777 -36.86312 -33.96788 -32.37209 -31.41599 -30.22675 -27.80180 -26.61574 -24.19024 -23.03921 -21.18366 -20.59660 -18.73532 -16.75162 -15.93143 -15.22424 -14.76883 -14.75157 -14.43365 -13.43543 -13.20916 -12.68712 -12.51081 -12.44658 -12.06719 -11.77001 -11.65763 -11.30070 -11.19579 -10.97624 -10.78067 -10.36314 -10.24605 -10.02428 -9.82850 -9.01855 -8.84305 -8.19475 -7.06031 -6.71669 -6.44245 -4.04256 2.31623 2.58388 3.07809 3.14854 3.18459 3.82744 3.99228 4.09600 4.98903 5.38778 5.42069 5.59613 5.79961 5.80408 5.88397 6.00382 6.07607 6.24296 6.26201 6.40075 6.45344 6.49587 6.75761 6.78554 6.98478 7.00945 7.19285 7.34080 7.54058 7.76639 8.04755 8.23963 8.46327 8.64251 9.00513 9.07581 9.22612 10.42889 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.013015 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.098479 B = 2150.803320 C = 3326.587708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.016 4.016 3 C -0.113 4.113 4 C 0.084 3.916 5 C -0.455 4.455 6 H 0.077 0.923 7 C 0.080 3.920 8 N -0.812 5.812 9 Si 0.899 3.101 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.267 1.267 13 C -0.140 4.140 14 C 0.023 3.977 15 C -0.258 4.258 16 C 0.116 3.884 17 N -0.529 5.529 18 C 0.273 3.727 19 N -0.460 5.460 20 C 0.093 3.907 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.276 0.724 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.137 0.863 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 -1.823 3.257 3.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 C -0.214 4.214 4 C 0.078 3.922 5 C -0.487 4.487 6 H 0.095 0.905 7 C -0.135 4.135 8 N -0.440 5.440 9 Si 0.725 3.275 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.191 1.191 13 C -0.149 4.149 14 C -0.003 4.003 15 C -0.282 4.282 16 C -0.049 4.049 17 N -0.244 5.244 18 C 0.039 3.961 19 N -0.148 5.148 20 C -0.050 4.050 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.903 -1.928 4.349 4.842 hybrid contribution 0.002 0.162 -1.644 1.652 sum 0.905 -1.766 2.705 3.355 Atomic orbital electron populations 1.21731 0.96506 0.99538 1.02042 1.19520 0.94583 0.90900 1.00449 1.20174 1.20698 0.96334 0.84240 1.17717 0.94538 0.88296 0.91662 1.18506 1.44879 0.95242 0.90121 0.90510 1.25689 0.93139 0.94132 1.00576 1.69920 1.30376 1.08179 1.35478 0.86516 0.79841 0.78650 0.82498 1.19327 1.20656 1.19143 1.19901 1.05642 0.97222 0.92097 1.21014 0.89344 0.90082 0.99829 1.21555 1.11647 1.00030 0.94925 1.21890 0.97198 0.93312 0.92496 1.66276 1.17414 0.99626 1.41125 1.18343 1.00678 0.86687 0.90341 1.42614 1.58277 1.08897 1.05047 1.21569 1.01209 0.99614 0.82643 0.94121 0.94081 0.91803 0.91003 0.93998 0.91323 0.85485 0.86897 0.84559 0.93187 0.91408 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 37.15 0.37 -2.15 16 2 C -0.02 -0.32 5.90 -27.89 -0.16 -0.48 16 3 C -0.11 -2.66 6.21 -80.61 -0.50 -3.16 16 4 C 0.08 2.22 5.73 -104.85 -0.60 1.62 16 5 C -0.46 -11.86 8.94 -38.01 -0.34 -12.20 16 6 H 0.08 1.92 7.51 -52.49 -0.39 1.53 16 7 C 0.08 1.99 4.96 -17.32 -0.09 1.91 16 8 N -0.81 -21.06 10.23 55.54 0.57 -20.49 16 9 Si 0.90 18.84 29.60 -169.99 -5.03 13.80 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 13 C -0.14 -3.68 5.78 -104.88 -0.61 -4.28 16 14 C 0.02 0.56 8.85 -39.12 -0.35 0.22 16 15 C -0.26 -5.43 10.11 -39.41 -0.40 -5.83 16 16 C 0.12 2.41 11.14 -17.53 -0.20 2.21 16 17 N -0.53 -12.32 10.39 -12.26 -0.13 -12.45 16 18 C 0.27 6.81 7.85 -155.34 -1.22 5.59 16 19 N -0.46 -10.53 3.14 -118.00 -0.37 -10.90 16 20 C 0.09 1.65 10.81 59.85 0.65 2.29 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.07 1.38 7.58 -51.93 -0.39 0.99 16 25 H 0.04 0.71 6.88 -51.93 -0.36 0.35 16 26 H 0.28 6.65 8.31 -40.82 -0.34 6.32 16 27 H 0.13 3.12 6.38 -52.49 -0.33 2.79 16 28 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 29 H 0.14 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.04 6.84 -51.93 -0.36 0.68 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 LS Contribution 271.18 15.07 4.09 4.09 Total: -1.00 -29.12 271.18 -8.25 -37.36 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.93 Total: 2.85 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.44 Total: -14.26 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.07 Total: -43.83 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.12 -8.25 -37.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.821 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds