Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.38884 * 125.37131 * 269.99868 * 3 2 1 5 5 C 1.40894 * 126.98995 * 0.02562 * 4 3 2 6 6 H 1.07999 * 119.99602 * 329.28590 * 5 4 3 7 7 C 1.39759 * 120.00249 * 149.27808 * 5 4 3 8 8 N 1.31038 * 119.99829 * 341.25734 * 7 5 4 9 9 Si 1.86798 * 120.00145 * 161.24940 * 7 5 4 10 10 H 1.48504 * 109.47055 * 60.00180 * 9 7 5 11 11 H 1.48497 * 109.47163 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47355 * 300.00720 * 9 7 5 13 13 C 1.47560 * 106.02199 * 180.02562 * 4 3 2 14 14 C 1.39264 * 134.09255 * 179.97438 * 13 4 3 15 15 C 1.38444 * 118.07056 * 180.02562 * 14 13 4 16 16 C 1.38508 * 119.28605 * 0.25081 * 15 14 13 17 17 N 1.31652 * 121.53512 * 359.45941 * 16 15 14 18 18 C 1.32714 * 121.73112 * 0.56613 * 17 16 15 19 19 N 1.35767 * 125.36946 * 90.02648 * 3 2 1 20 20 C 1.46500 * 124.62557 * 359.97438 * 19 3 2 21 21 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47431 * 299.99509 * 1 2 3 23 23 H 1.09001 * 109.47345 * 60.00295 * 1 2 3 24 24 H 1.08999 * 109.47350 * 239.99835 * 2 1 3 25 25 H 1.09001 * 109.47345 * 119.99705 * 2 1 3 26 26 H 0.96999 * 119.99517 * 185.10278 * 8 7 5 27 27 H 1.07996 * 120.96351 * 0.02562 * 14 13 4 28 28 H 1.08005 * 120.35745 * 179.97438 * 15 14 13 29 29 H 1.08009 * 119.23728 * 179.72191 * 16 15 14 30 30 H 1.09004 * 109.47278 * 270.00107 * 20 19 3 31 31 H 1.09001 * 109.47736 * 29.99821 * 20 19 3 32 32 H 1.08995 * 109.47010 * 150.00518 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3002 2.1788 -1.1325 5 6 2.1575 1.7765 -2.4752 6 1 2.2975 0.7405 -2.7462 7 6 1.8345 2.7180 -3.4563 8 7 1.3108 3.8689 -3.1127 9 14 2.1497 2.3357 -5.2574 10 1 1.3777 1.1294 -5.6499 11 1 1.7239 3.4891 -6.0901 12 1 3.5987 2.0848 -5.4640 13 6 2.7648 3.4913 -0.6436 14 6 3.1807 4.6655 -1.2662 15 6 3.5579 5.7295 -0.4648 16 6 3.5142 5.5893 0.9124 17 7 3.1120 4.4706 1.4782 18 6 2.7396 3.4193 0.7590 19 7 2.2946 2.1616 1.1071 20 6 2.1277 1.6891 2.4837 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.0183 4.4920 -3.7962 27 1 3.2082 4.7438 -2.3430 28 1 3.8871 6.6575 -0.9088 29 1 3.8129 6.4183 1.5369 30 1 1.1175 1.9147 2.8254 31 1 2.2915 0.6121 2.5207 32 1 2.8497 2.1888 3.1294 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259952524.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = 42.072442 kcal Electronic energy + Delta-G solvation = -15959.926331 eV Core-core repulsion = 13498.919958 eV Total energy + Delta-G solvation = -2461.006373 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.83066 -38.57846 -35.77486 -33.95824 -33.17842 -31.92915 -29.54923 -28.29642 -25.87293 -24.69785 -22.91918 -22.33759 -20.46781 -18.57312 -17.71864 -16.89294 -16.49645 -16.43409 -16.10661 -15.05608 -14.77094 -14.38195 -14.10984 -14.06983 -13.75850 -13.34953 -13.24728 -13.01141 -12.89598 -12.60980 -12.39932 -11.99602 -11.86237 -11.74131 -11.48526 -10.83356 -10.67140 -9.97329 -8.80421 -8.56766 -8.27035 -5.93958 0.53495 0.82723 1.39523 1.44363 1.52584 2.13852 2.20947 2.34412 3.18377 3.54131 3.83482 4.18066 4.23653 4.29528 4.39593 4.49239 4.63011 4.69488 4.72109 4.75474 4.79288 4.99766 5.15575 5.18656 5.33266 5.35841 5.50439 5.54871 5.75075 5.99588 6.26580 6.37348 6.73520 6.77779 7.16952 7.18981 7.47310 8.60932 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.013015 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.098479 B = 2150.803320 C = 3326.587708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.017 4.017 3 C -0.100 4.100 4 C 0.030 3.970 5 C -0.483 4.483 6 H 0.074 0.926 7 C 0.040 3.960 8 N -0.845 5.845 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.267 1.267 13 C -0.179 4.179 14 C -0.001 4.001 15 C -0.249 4.249 16 C 0.117 3.883 17 N -0.535 5.535 18 C 0.243 3.757 19 N -0.464 5.464 20 C 0.088 3.912 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.031 0.969 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.278 0.722 27 H 0.113 0.887 28 H 0.149 0.851 29 H 0.185 0.815 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -2.111 4.315 4.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 C -0.203 4.203 4 C 0.024 3.976 5 C -0.516 4.516 6 H 0.092 0.908 7 C -0.171 4.171 8 N -0.474 5.474 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.192 1.192 13 C -0.187 4.187 14 C -0.027 4.027 15 C -0.272 4.272 16 C -0.048 4.048 17 N -0.250 5.250 18 C 0.011 3.989 19 N -0.152 5.152 20 C -0.054 4.054 21 H 0.096 0.904 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.167 0.833 29 H 0.202 0.798 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.106 -2.231 5.439 5.982 hybrid contribution -0.038 0.279 -1.812 1.834 sum 1.068 -1.952 3.627 4.255 Atomic orbital electron populations 1.21620 0.95217 1.01479 1.00548 1.19665 0.95530 0.88545 1.01798 1.20860 1.17822 0.97549 0.84074 1.18163 0.96903 0.89682 0.92830 1.18681 1.46400 0.95464 0.91022 0.90831 1.26384 0.92541 0.93877 1.04334 1.70006 1.31675 1.09160 1.36583 0.85497 0.79453 0.78618 0.77541 1.18650 1.20052 1.19157 1.20249 1.07111 0.98020 0.93358 1.21120 0.90796 0.91105 0.99670 1.21950 1.09818 1.00254 0.95147 1.22716 0.95404 0.93646 0.93053 1.66408 1.17625 0.99897 1.41100 1.18649 1.02040 0.87978 0.90270 1.42943 1.57243 1.08270 1.06705 1.21857 1.02118 1.01347 0.80046 0.90430 0.93875 0.94945 0.91351 0.90813 0.91244 0.86893 0.83305 0.79770 0.92031 0.88600 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.89 71.98 0.71 -3.78 16 2 C -0.02 -0.64 5.90 29.85 0.18 -0.47 16 3 C -0.10 -4.70 6.21 42.11 0.26 -4.44 16 4 C 0.03 1.66 5.73 -20.01 -0.11 1.55 16 5 C -0.48 -26.18 8.94 23.29 0.21 -25.97 16 6 H 0.07 3.83 7.51 -2.91 -0.02 3.81 16 7 C 0.04 2.07 4.96 85.18 0.42 2.49 16 8 N -0.85 -45.55 10.23 21.80 0.22 -45.33 16 9 Si 0.97 39.71 29.60 68.60 2.03 41.74 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 C -0.18 -9.64 5.78 -20.03 -0.12 -9.76 16 14 C 0.00 -0.04 8.85 22.57 0.20 0.16 16 15 C -0.25 -10.17 10.11 22.38 0.23 -9.94 16 16 C 0.12 4.59 11.14 84.78 0.94 5.54 16 17 N -0.53 -24.24 10.39 -192.70 -2.00 -26.24 16 18 C 0.24 12.17 7.85 133.68 1.05 13.22 16 19 N -0.46 -20.92 3.14 -527.24 -1.66 -22.58 16 20 C 0.09 2.90 10.81 127.77 1.38 4.29 16 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 25 H 0.07 2.27 6.88 -2.39 -0.02 2.25 16 26 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 27 H 0.11 5.81 6.38 -2.91 -0.02 5.79 16 28 H 0.15 4.87 8.06 -2.91 -0.02 4.84 16 29 H 0.19 5.31 8.06 -2.91 -0.02 5.28 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.10 2.61 6.84 -2.39 -0.02 2.59 16 32 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 Total: -1.00 -65.33 271.18 5.06 -60.27 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.12 Total: 19.26 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 5.35 Total: -27.12 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.44 Total: -94.15 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -65.33 5.06 -60.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952524.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.345 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds