Wall clock time and date at job start Mon Mar 30 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99611 * 2 1 4 4 H 1.48507 * 109.46854 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47316 * 30.00090 * 3 2 1 6 6 H 1.48499 * 109.46999 * 150.00203 * 3 2 1 7 7 C 1.37871 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00068 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.34178 * 126.49104 * 264.95598 * 11 10 9 13 13 N 1.36993 * 109.91784 * 180.02562 * 12 11 10 14 14 H 0.97000 * 125.07560 * 180.02562 * 13 12 11 15 15 C 1.37707 * 109.85237 * 0.02562 * 13 12 11 16 16 C 1.39077 * 133.42138 * 179.71302 * 15 13 12 17 17 C 1.38375 * 119.72332 * 179.82881 * 16 15 13 18 18 N 1.39797 * 119.75171 * 180.24081 * 17 16 15 19 19 C 1.39450 * 120.49792 * 0.49021 * 17 16 15 20 20 C 1.36525 * 120.45810 * 359.74780 * 19 17 16 21 21 C 1.39673 * 119.86611 * 0.02562 * 20 19 17 22 22 H 0.97003 * 120.00632 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47152 * 59.99629 * 9 7 2 24 24 H 1.09007 * 109.46737 * 299.99585 * 9 7 2 25 25 H 1.08997 * 109.46990 * 59.99335 * 10 9 7 26 26 H 1.09002 * 109.46365 * 299.99173 * 10 9 7 27 27 H 1.08000 * 125.03911 * 0.03123 * 12 11 10 28 28 H 1.07999 * 120.13747 * 0.31276 * 16 15 13 29 29 H 0.97007 * 120.00014 * 180.24612 * 18 17 16 30 30 H 0.96991 * 120.00375 * 0.24043 * 18 17 16 31 31 H 1.08003 * 119.77326 * 179.73213 * 19 17 16 32 32 H 1.07991 * 120.07061 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5286 -2.6364 -0.0001 12 6 6.3274 -2.7299 -1.0742 13 7 7.6401 -2.6966 -0.6838 14 1 8.4013 -2.7485 -1.2828 15 6 7.7177 -2.5784 0.6860 16 6 8.7802 -2.5066 1.5806 17 6 8.5289 -2.3843 2.9359 18 7 9.5964 -2.3070 3.8352 19 6 7.2187 -2.3429 3.4118 20 6 6.1654 -2.4172 2.5464 21 6 6.3993 -2.5362 1.1746 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6806 0.8905 24 1 3.8752 -0.6795 -0.8896 25 1 3.6585 -3.1493 -0.8920 26 1 3.6580 -3.1511 0.8880 27 1 5.9861 -2.8182 -2.0950 28 1 9.7971 -2.5382 1.2184 29 1 9.4243 -2.2248 4.7863 30 1 10.5090 -2.3356 3.5082 31 1 7.0360 -2.2516 4.4723 32 1 5.1534 -2.3841 2.9218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259972273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:55 Heat of formation + Delta-G solvation = 43.412994 kcal Electronic energy + Delta-G solvation = -15045.617085 eV Core-core repulsion = 12584.668843 eV Total energy + Delta-G solvation = -2460.948242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81385 -37.45399 -34.12546 -33.39949 -32.02750 -30.03166 -28.76967 -27.12799 -24.83089 -22.64415 -21.18928 -20.82422 -18.76060 -17.75096 -16.62350 -16.54709 -16.11177 -15.16838 -14.29700 -13.96456 -13.67686 -13.58868 -12.95733 -12.83101 -12.62504 -12.28517 -12.13909 -11.52006 -11.28772 -10.85231 -10.65313 -10.14671 -9.92921 -9.74305 -9.58460 -9.05998 -8.70932 -8.44317 -7.53486 -6.84576 -5.95799 -3.92682 1.56521 2.03283 3.19446 3.38156 3.41890 3.45310 3.53060 4.01614 4.28563 4.54529 5.08190 5.26898 5.38991 5.40016 5.63608 5.71778 5.89435 5.96269 6.16899 6.31732 6.46638 6.65133 6.69085 6.85325 6.93507 7.02203 7.30444 7.38211 7.47904 7.61281 7.68671 7.79226 7.90577 7.95479 8.63716 9.10126 9.68033 11.17773 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031523 B = 0.006414 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.033145 B = 4364.276907 C = 4714.942829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.037 4.037 11 C -0.127 4.127 12 C 0.010 3.990 13 N -0.603 5.603 14 H 0.408 0.592 15 C 0.143 3.857 16 C -0.231 4.231 17 C 0.231 3.769 18 N -0.883 5.883 19 C -0.218 4.218 20 C -0.014 4.014 21 C -0.150 4.150 22 H 0.262 0.738 23 H 0.016 0.984 24 H 0.009 0.991 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.164 0.836 28 H 0.110 0.890 29 H 0.396 0.604 30 H 0.393 0.607 31 H 0.117 0.883 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.521 -5.255 3.615 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.043 4.043 10 C -0.075 4.075 11 C -0.133 4.133 12 C -0.113 4.113 13 N -0.206 5.206 14 H 0.244 0.756 15 C 0.033 3.967 16 C -0.258 4.258 17 C 0.126 3.874 18 N -0.422 5.422 19 C -0.241 4.241 20 C -0.033 4.033 21 C -0.156 4.156 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.028 0.972 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.182 0.818 28 H 0.128 0.872 29 H 0.224 0.776 30 H 0.220 0.780 31 H 0.135 0.865 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.355 -5.150 3.467 20.326 hybrid contribution 1.075 1.020 -0.139 1.488 sum 20.429 -4.130 3.328 21.107 Atomic orbital electron populations 1.69921 1.06278 1.26734 1.51698 1.25001 0.94660 0.99068 0.94693 0.86817 0.80563 0.83743 0.78469 1.20433 1.21522 1.18822 1.21214 0.89672 0.94399 1.50251 0.90988 1.19534 0.96386 0.92009 0.96383 1.19972 0.86448 0.99684 1.01397 1.20796 0.96185 1.05871 0.90467 1.21504 0.81750 1.08821 0.99209 1.41645 1.07473 1.66468 1.05047 0.75617 1.17864 0.94855 1.00576 0.83377 1.19020 0.96325 1.19923 0.90533 1.17260 0.87841 0.93605 0.88653 1.42383 1.06116 1.85739 1.08006 1.20089 0.90701 1.13816 0.99450 1.20187 0.98804 0.93261 0.91060 1.19031 0.91885 1.11216 0.93442 0.92877 0.96523 0.97218 0.92111 0.91989 0.81827 0.87165 0.77631 0.77965 0.86483 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.96 55.43 0.77 -27.72 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.14 4.02 -27.88 -0.11 -0.25 16 10 C -0.04 -0.77 5.68 -27.88 -0.16 -0.93 16 11 C -0.13 -2.37 5.57 -102.70 -0.57 -2.94 16 12 C 0.01 0.15 11.74 -16.68 -0.20 -0.04 16 13 N -0.60 -8.36 6.08 -10.63 -0.06 -8.43 16 14 H 0.41 4.13 8.96 -40.82 -0.37 3.76 16 15 C 0.14 2.27 7.27 -84.00 -0.61 1.66 16 16 C -0.23 -3.19 9.91 -39.22 -0.39 -3.57 16 17 C 0.23 3.03 6.75 -83.72 -0.56 2.47 16 18 N -0.88 -8.05 9.09 32.44 0.29 -7.75 16 19 C -0.22 -3.11 9.81 -39.75 -0.39 -3.50 16 20 C -0.01 -0.23 10.04 -39.66 -0.40 -0.63 16 21 C -0.15 -2.72 6.35 -105.09 -0.67 -3.38 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 24 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.16 2.14 8.06 -52.49 -0.42 1.71 16 28 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.40 2.89 8.84 -40.82 -0.36 2.52 16 30 H 0.39 2.81 8.83 -40.82 -0.36 2.45 16 31 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -33.76 275.84 -7.97 -41.73 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.98 Total: 4.83 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -4.49 Total: -24.65 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 1.00 Total: -43.90 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.76 -7.97 -41.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.146 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds