Wall clock time and date at job start Mon Mar 30 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99611 * 2 1 4 4 H 1.48507 * 109.46854 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47316 * 30.00090 * 3 2 1 6 6 H 1.48499 * 109.46999 * 150.00203 * 3 2 1 7 7 C 1.37871 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99884 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00068 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47088 * 180.02562 * 10 9 7 12 12 C 1.34178 * 126.49104 * 264.95598 * 11 10 9 13 13 N 1.36993 * 109.91784 * 180.02562 * 12 11 10 14 14 H 0.97000 * 125.07560 * 180.02562 * 13 12 11 15 15 C 1.37707 * 109.85237 * 0.02562 * 13 12 11 16 16 C 1.39077 * 133.42138 * 179.71302 * 15 13 12 17 17 C 1.38375 * 119.72332 * 179.82881 * 16 15 13 18 18 N 1.39797 * 119.75171 * 180.24081 * 17 16 15 19 19 C 1.39450 * 120.49792 * 0.49021 * 17 16 15 20 20 C 1.36525 * 120.45810 * 359.74780 * 19 17 16 21 21 C 1.39673 * 119.86611 * 0.02562 * 20 19 17 22 22 H 0.97003 * 120.00632 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47152 * 59.99629 * 9 7 2 24 24 H 1.09007 * 109.46737 * 299.99585 * 9 7 2 25 25 H 1.08997 * 109.46990 * 59.99335 * 10 9 7 26 26 H 1.09002 * 109.46365 * 299.99173 * 10 9 7 27 27 H 1.08000 * 125.03911 * 0.03123 * 12 11 10 28 28 H 1.07999 * 120.13747 * 0.31276 * 16 15 13 29 29 H 0.97007 * 120.00014 * 180.24612 * 18 17 16 30 30 H 0.96991 * 120.00375 * 0.24043 * 18 17 16 31 31 H 1.08003 * 119.77326 * 179.73213 * 19 17 16 32 32 H 1.07991 * 120.07061 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5286 -2.6364 -0.0001 12 6 6.3274 -2.7299 -1.0742 13 7 7.6401 -2.6966 -0.6838 14 1 8.4013 -2.7485 -1.2828 15 6 7.7177 -2.5784 0.6860 16 6 8.7802 -2.5066 1.5806 17 6 8.5289 -2.3843 2.9359 18 7 9.5964 -2.3070 3.8352 19 6 7.2187 -2.3429 3.4118 20 6 6.1654 -2.4172 2.5464 21 6 6.3993 -2.5362 1.1746 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6806 0.8905 24 1 3.8752 -0.6795 -0.8896 25 1 3.6585 -3.1493 -0.8920 26 1 3.6580 -3.1511 0.8880 27 1 5.9861 -2.8182 -2.0950 28 1 9.7971 -2.5382 1.2184 29 1 9.4243 -2.2248 4.7863 30 1 10.5090 -2.3356 3.5082 31 1 7.0360 -2.2516 4.4723 32 1 5.1534 -2.3841 2.9218 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259972273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:55 Heat of formation + Delta-G solvation = 20.521923 kcal Electronic energy + Delta-G solvation = -15046.609717 eV Core-core repulsion = 12584.668843 eV Total energy + Delta-G solvation = -2461.940874 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.97613 -38.50795 -35.97611 -34.47631 -33.93941 -31.43859 -30.12894 -28.34576 -26.61772 -23.76836 -22.79264 -22.26055 -20.12632 -19.07682 -18.53140 -17.60388 -17.19352 -16.33384 -16.16578 -15.29122 -15.13116 -14.75928 -14.70360 -14.28373 -14.08794 -13.79932 -13.40303 -13.15299 -12.96736 -12.51342 -12.10277 -11.84962 -11.68222 -11.47364 -11.21637 -11.05882 -10.73011 -9.88898 -8.70026 -8.26983 -7.92397 -6.29587 0.40464 0.90454 1.34764 1.37233 1.50950 1.93201 2.36458 2.38108 3.08547 3.11803 3.18706 3.96878 4.11684 4.31313 4.40033 4.55504 4.73828 4.77326 4.85413 4.92714 5.02705 5.18539 5.26037 5.41091 5.50689 5.63924 5.67296 5.74000 5.86716 6.06751 6.27530 6.33054 6.69892 6.78076 6.92936 7.13473 7.35036 8.89961 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031523 B = 0.006414 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.033145 B = 4364.276907 C = 4714.942829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.528 4.528 8 H 0.036 0.964 9 C 0.004 3.996 10 C -0.024 4.024 11 C -0.175 4.175 12 C 0.033 3.967 13 N -0.587 5.587 14 H 0.428 0.572 15 C 0.133 3.867 16 C -0.232 4.232 17 C 0.233 3.767 18 N -0.865 5.865 19 C -0.215 4.215 20 C -0.044 4.044 21 C -0.185 4.185 22 H 0.266 0.734 23 H 0.007 0.993 24 H 0.014 0.986 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.192 0.808 28 H 0.139 0.861 29 H 0.407 0.593 30 H 0.406 0.594 31 H 0.137 0.863 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.012 -4.511 3.524 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.567 4.567 8 H 0.054 0.946 9 C -0.034 4.034 10 C -0.062 4.062 11 C -0.182 4.182 12 C -0.091 4.091 13 N -0.193 5.193 14 H 0.268 0.732 15 C 0.023 3.977 16 C -0.260 4.260 17 C 0.126 3.874 18 N -0.406 5.406 19 C -0.238 4.238 20 C -0.064 4.064 21 C -0.190 4.190 22 H 0.075 0.925 23 H 0.025 0.975 24 H 0.033 0.967 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.209 0.791 28 H 0.157 0.843 29 H 0.237 0.763 30 H 0.236 0.764 31 H 0.155 0.845 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 22.912 -4.420 3.393 23.580 hybrid contribution 0.022 0.696 -0.043 0.697 sum 22.935 -3.724 3.350 23.475 Atomic orbital electron populations 1.70062 1.08107 1.28039 1.53027 1.25925 0.95524 1.03181 0.94258 0.85712 0.79259 0.78761 0.79261 1.18908 1.20707 1.18048 1.21546 0.92055 0.93196 1.49855 0.94606 1.19409 0.93338 0.94798 0.95843 1.19655 0.88879 0.96842 1.00799 1.20584 0.94845 1.10387 0.92396 1.21826 0.82125 1.05628 0.99553 1.41587 1.07549 1.65301 1.04814 0.73211 1.18080 0.94488 1.00823 0.84262 1.19328 0.97129 1.19060 0.90447 1.17350 0.88287 0.92507 0.89238 1.42327 1.05869 1.84217 1.08160 1.20327 0.90823 1.12479 1.00145 1.20254 0.99064 0.95544 0.91518 1.19272 0.93097 1.12863 0.93811 0.92516 0.97454 0.96740 0.91900 0.93468 0.79146 0.84293 0.76337 0.76396 0.84501 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 46.64 27.47 68.60 1.88 48.53 16 4 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 6 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 7 C -0.53 -31.87 9.66 25.60 0.25 -31.62 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C 0.00 0.19 4.02 29.85 0.12 0.31 16 10 C -0.02 -1.02 5.68 29.85 0.17 -0.85 16 11 C -0.18 -6.55 5.57 -18.62 -0.10 -6.65 16 12 C 0.03 0.98 11.74 82.96 0.97 1.95 16 13 N -0.59 -14.69 6.08 -187.56 -1.14 -15.83 16 14 H 0.43 7.11 8.96 -92.71 -0.83 6.27 16 15 C 0.13 3.95 7.27 39.01 0.28 4.24 16 16 C -0.23 -5.68 9.91 22.50 0.22 -5.46 16 17 C 0.23 5.46 6.75 38.20 0.26 5.72 16 18 N -0.86 -12.54 9.09 -51.29 -0.47 -13.01 16 19 C -0.22 -5.86 9.81 22.16 0.22 -5.64 16 20 C -0.04 -1.52 10.04 22.22 0.22 -1.29 16 21 C -0.18 -6.66 6.35 -20.17 -0.13 -6.79 16 22 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 23 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 24 H 0.01 0.71 7.57 -2.38 -0.02 0.69 16 25 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.41 4.44 8.84 -92.70 -0.82 3.62 16 30 H 0.41 4.08 8.83 -92.72 -0.82 3.26 16 31 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.11 3.92 8.06 -2.92 -0.02 3.89 16 Total: -1.00 -74.49 275.84 2.16 -72.33 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -1.37 Total: 14.15 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 2.95 Total: -45.17 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -1.31 Total: -89.84 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.53 kcal Total: -74.49 2.16 -72.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.854 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds