Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38370 * 119.93449 * 2 1 4 4 C 1.38321 * 120.27584 * 180.02562 * 3 2 1 5 5 C 1.38002 * 120.13654 * 359.97438 * 4 3 2 6 6 C 1.39465 * 119.85985 * 359.97438 * 5 4 3 7 7 C 1.48039 * 120.13242 * 179.97438 * 6 5 4 8 8 N 1.29596 * 122.86331 * 159.46083 * 7 6 5 9 9 C 1.46930 * 109.96140 * 179.97438 * 8 7 6 10 10 C 1.54155 * 104.20255 * 0.12019 * 9 8 7 11 11 N 1.37192 * 122.91656 * 339.54189 * 7 6 5 12 12 C 1.36884 * 125.83772 * 359.97438 * 11 7 6 13 13 H 1.08003 * 120.00135 * 322.42213 * 12 11 7 14 14 C 1.38940 * 120.00177 * 142.42733 * 12 11 7 15 15 N 1.31462 * 120.00218 * 165.04795 * 14 12 11 16 16 Si 1.86802 * 119.99789 * 345.04880 * 14 12 11 17 17 H 1.48504 * 109.46738 * 87.34493 * 16 14 12 18 18 H 1.48500 * 109.46973 * 207.34622 * 16 14 12 19 19 H 1.48503 * 109.46984 * 327.34471 * 16 14 12 20 20 C 1.37961 * 119.93106 * 180.23713 * 2 1 3 21 21 H 1.08999 * 109.47002 * 89.99793 * 1 2 3 22 22 H 1.08999 * 109.47327 * 210.00148 * 1 2 3 23 23 H 1.09005 * 109.47333 * 330.00134 * 1 2 3 24 24 H 1.08006 * 119.85927 * 359.97438 * 3 2 1 25 25 H 1.08005 * 119.92897 * 179.97438 * 4 3 2 26 26 H 1.07994 * 120.07007 * 180.02562 * 5 4 3 27 27 H 1.08998 * 110.50744 * 241.40344 * 9 8 7 28 28 H 1.08994 * 110.50999 * 118.84339 * 9 8 7 29 29 H 1.08991 * 110.65095 * 118.37976 * 10 9 8 30 30 H 1.08996 * 110.65654 * 241.48253 * 10 9 8 31 31 H 0.96998 * 120.00352 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.07043 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1991 0.0000 4 6 3.5807 1.2073 -0.0005 5 6 4.2806 0.0180 -0.0005 6 6 3.5904 -1.1939 0.0005 7 6 4.3352 -2.4733 0.0000 8 7 3.8085 -3.5938 0.3828 9 6 4.7942 -4.6771 0.2662 10 6 6.0593 -3.9809 -0.2736 11 7 5.6423 -2.5748 -0.4041 12 6 6.4252 -1.5449 -0.8516 13 1 5.9960 -0.7689 -1.4680 14 6 7.7718 -1.4980 -0.5129 15 7 8.5857 -0.6964 -1.1635 16 14 8.4259 -2.5740 0.8669 17 1 8.8068 -3.9015 0.3212 18 1 9.6169 -1.9287 1.4756 19 1 7.3740 -2.7469 1.9008 20 6 2.1954 -1.1956 -0.0049 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6541 2.1325 -0.0004 25 1 4.1139 2.1466 -0.0009 26 1 5.3605 0.0257 -0.0005 27 1 4.4469 -5.4355 -0.4354 28 1 4.9899 -5.1220 1.2418 29 1 6.8816 -4.0743 0.4356 30 1 6.3389 -4.3902 -1.2443 31 1 9.5258 -0.6634 -0.9269 32 1 1.6554 -2.1309 -0.0092 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = 49.052266 kcal Electronic energy + Delta-G solvation = -15675.873794 eV Core-core repulsion = 13215.170089 eV Total energy + Delta-G solvation = -2460.703705 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19000 -39.59584 -35.40152 -33.86176 -32.92367 -32.45152 -29.68224 -27.61410 -26.73901 -23.91326 -23.70581 -22.08519 -20.23903 -19.54108 -17.85577 -16.96639 -16.71624 -16.19781 -15.85639 -15.26460 -15.02357 -14.52059 -14.39783 -14.03704 -13.80226 -13.67550 -13.34919 -13.13148 -12.90949 -12.88587 -12.44540 -12.22735 -11.92751 -11.78954 -11.58128 -10.95556 -10.64183 -9.67381 -9.47759 -8.86665 -8.53612 -6.09271 0.14919 0.58118 1.13688 1.24233 1.33462 1.86819 2.12621 2.64323 2.85498 3.10780 3.54867 3.84472 4.08492 4.09672 4.13911 4.30831 4.39511 4.56454 4.62325 4.67822 4.86604 4.92773 4.95129 5.05558 5.09648 5.27878 5.31838 5.39507 5.68819 5.72423 5.81322 5.96679 6.11572 6.21407 6.88893 7.35796 7.62617 8.59388 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029627 B = 0.009487 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.868333 B = 2950.807203 C = 3680.191727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.103 4.103 3 C -0.104 4.104 4 C -0.131 4.131 5 C -0.117 4.117 6 C -0.058 4.058 7 C 0.378 3.622 8 N -0.635 5.635 9 C 0.035 3.965 10 C 0.052 3.948 11 N -0.504 5.504 12 C -0.307 4.307 13 H 0.086 0.914 14 C 0.022 3.978 15 N -0.904 5.904 16 Si 0.938 3.062 17 H -0.259 1.259 18 H -0.283 1.283 19 H -0.278 1.278 20 C -0.087 4.087 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.157 0.843 25 H 0.140 0.860 26 H 0.131 0.869 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.280 0.720 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 1.205 2.934 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.122 4.122 4 C -0.149 4.149 5 C -0.137 4.137 6 C -0.060 4.060 7 C 0.108 3.892 8 N -0.372 5.372 9 C -0.095 4.095 10 C -0.072 4.072 11 N -0.214 5.214 12 C -0.435 4.435 13 H 0.103 0.897 14 C -0.182 4.182 15 N -0.542 5.542 16 Si 0.765 3.235 17 H -0.185 1.185 18 H -0.210 1.210 19 H -0.204 1.204 20 C -0.107 4.107 21 H 0.098 0.902 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.175 0.825 25 H 0.158 0.842 26 H 0.148 0.852 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.248 0.871 3.168 11.718 hybrid contribution 2.049 -0.526 0.115 2.119 sum -9.199 0.345 3.284 9.773 Atomic orbital electron populations 1.20789 0.88315 1.03805 1.03200 1.20204 0.97948 0.92042 1.00128 1.21496 0.93572 0.98620 0.98553 1.21346 0.95109 0.97565 1.00853 1.22097 1.02061 0.92270 0.97265 1.18294 0.93493 0.89565 1.04639 1.21842 0.84488 0.93961 0.88947 1.74515 1.28796 0.98650 1.35256 1.22934 0.88996 0.96579 1.00995 1.22919 0.98905 0.84353 1.00992 1.43964 1.09951 1.05854 1.61629 1.18735 0.91493 1.03720 1.29552 0.89652 1.25863 0.96242 0.97782 0.98286 1.69770 1.05339 1.39385 1.39697 0.85971 0.77571 0.79318 0.80607 1.18455 1.20969 1.20385 1.21192 0.91769 0.99035 0.98661 0.90238 0.91272 0.89535 0.82542 0.84184 0.85155 0.89056 0.90131 0.93299 0.90870 0.91030 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.01 71.24 0.71 -1.30 16 2 C -0.10 -2.92 5.87 -19.90 -0.12 -3.04 16 3 C -0.10 -2.81 9.69 22.32 0.22 -2.60 16 4 C -0.13 -4.30 10.03 22.23 0.22 -4.07 16 5 C -0.12 -4.93 8.51 22.51 0.19 -4.74 16 6 C -0.06 -2.51 5.82 -20.08 -0.12 -2.62 16 7 C 0.38 18.06 7.41 136.88 1.01 19.07 16 8 N -0.63 -28.68 11.19 -337.02 -3.77 -32.45 16 9 C 0.04 1.40 8.03 86.69 0.70 2.09 16 10 C 0.05 2.31 6.42 86.63 0.56 2.87 16 11 N -0.50 -25.40 2.69 -508.54 -1.37 -26.77 16 12 C -0.31 -16.72 7.70 84.07 0.65 -16.07 16 13 H 0.09 4.99 6.58 -2.91 -0.02 4.97 16 14 C 0.02 1.20 5.47 84.92 0.46 1.67 16 15 N -0.90 -51.21 13.96 21.67 0.30 -50.91 16 16 Si 0.94 43.78 24.68 68.60 1.69 45.48 16 17 H -0.26 -11.33 6.91 99.48 0.69 -10.64 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -13.39 7.06 99.48 0.70 -12.69 16 20 C -0.09 -3.11 9.28 22.51 0.21 -2.90 16 21 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 23 H 0.09 1.28 8.08 -2.38 -0.02 1.26 16 24 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 25 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 26 H 0.13 6.32 4.96 -2.91 -0.01 6.30 16 27 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.05 2.18 3.66 -2.39 -0.01 2.17 16 30 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.13 4.47 7.84 -2.91 -0.02 4.45 16 Total: -1.00 -62.69 264.05 2.65 -60.04 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.10 Total: 16.27 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.70 Total: -11.66 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.84 Total: -110.12 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.69 Total: 45.48 kcal Total: -62.69 2.65 -60.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.088 kcal (2) G-P(sol) polarization free energy of solvation -62.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds