Wall clock time and date at job start Mon Mar 30 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47563 * 2 1 4 4 C 1.38884 * 125.35537 * 270.02473 * 3 2 1 5 5 C 1.40957 * 126.88360 * 359.97438 * 4 3 2 6 6 H 1.08004 * 120.00246 * 326.43348 * 5 4 3 7 7 C 1.39762 * 120.00008 * 146.43701 * 5 4 3 8 8 N 1.31045 * 120.00257 * 166.16659 * 7 5 4 9 9 Si 1.86806 * 119.99900 * 346.16867 * 7 5 4 10 10 H 1.48497 * 109.46972 * 95.50021 * 9 7 5 11 11 H 1.48503 * 109.46860 * 215.49725 * 9 7 5 12 12 H 1.48494 * 109.46884 * 335.49989 * 9 7 5 13 13 C 1.47727 * 106.22678 * 179.97438 * 4 3 2 14 14 N 1.32632 * 133.52811 * 180.32370 * 13 4 3 15 15 C 1.31638 * 121.45983 * 180.16261 * 14 13 4 16 16 C 1.38592 * 121.14504 * 359.47347 * 15 14 13 17 17 C 1.38365 * 119.63159 * 0.25937 * 16 15 14 18 18 C 1.39280 * 118.32476 * 0.02562 * 17 16 15 19 19 N 1.35587 * 125.35085 * 89.98481 * 3 2 1 20 20 C 1.46502 * 124.73185 * 0.02562 * 19 3 2 21 21 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46752 * 299.99951 * 1 2 3 23 23 H 1.08998 * 109.46751 * 59.99681 * 1 2 3 24 24 H 1.09001 * 109.47248 * 239.99926 * 2 1 3 25 25 H 1.09004 * 109.47192 * 120.00341 * 2 1 3 26 26 H 0.96996 * 119.99847 * 179.97438 * 8 7 5 27 27 H 1.07996 * 119.42134 * 179.75636 * 15 14 13 28 28 H 1.08011 * 120.18345 * 180.28146 * 16 15 14 29 29 H 1.08003 * 120.83671 * 180.02562 * 17 16 15 30 30 H 1.09002 * 109.46715 * 270.04753 * 20 19 3 31 31 H 1.08991 * 109.47187 * 30.04730 * 20 19 3 32 32 H 1.08995 * 109.47414 * 150.05391 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2999 2.1786 -1.1327 5 6 2.1565 1.7732 -2.4751 6 1 2.3420 0.7458 -2.7518 7 6 1.7743 2.7008 -3.4481 8 7 1.9004 2.4070 -4.7190 9 14 1.0837 4.3596 -2.9371 10 1 2.1740 5.3677 -2.9268 11 1 0.0333 4.7765 -3.9005 12 1 0.4950 4.2532 -1.5780 13 6 2.7649 3.4946 -0.6486 14 7 3.1520 4.6073 -1.2578 15 6 3.5316 5.6674 -0.5760 16 6 3.5314 5.6662 0.8099 17 6 3.1311 4.5314 1.4930 18 6 2.7389 3.4186 0.7530 19 7 2.2937 2.1605 1.1059 20 6 2.1275 1.6899 2.4833 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6347 3.0506 -5.3942 27 1 3.8443 6.5550 -1.1058 28 1 3.8417 6.5463 1.3538 29 1 3.1230 4.5092 2.5728 30 1 1.1170 1.9147 2.8245 31 1 2.2929 0.6133 2.5218 32 1 2.8487 2.1917 3.1282 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259996926.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:58 Heat of formation + Delta-G solvation = 43.038026 kcal Electronic energy + Delta-G solvation = -16091.101257 eV Core-core repulsion = 13630.136755 eV Total energy + Delta-G solvation = -2460.964502 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14608 -38.86497 -35.63984 -34.21368 -33.43998 -32.21684 -29.79653 -28.62073 -25.78950 -24.79002 -23.16296 -22.44685 -20.36977 -19.12570 -17.73658 -17.29532 -16.67238 -16.45504 -16.07368 -15.24710 -15.03761 -14.77994 -14.44949 -14.30724 -13.88012 -13.45324 -13.28821 -13.18296 -12.92700 -12.57958 -12.34718 -12.18394 -11.85587 -11.82041 -11.66397 -11.17676 -10.58316 -9.64746 -8.93616 -8.72092 -8.60686 -6.07880 0.27565 0.65789 1.29285 1.53030 1.53205 1.93802 2.18579 2.40975 3.04048 3.36977 3.68445 3.94416 4.09497 4.22054 4.26826 4.29897 4.44035 4.51664 4.64731 4.69172 4.71148 4.87278 4.93855 5.07707 5.19192 5.28839 5.36451 5.44490 5.47379 5.69953 6.06871 6.22833 6.52479 6.69152 6.90709 7.12302 7.44823 8.47801 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019181 B = 0.016526 C = 0.009802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.447345 B = 1693.925119 C = 2855.981733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.026 4.026 3 C -0.048 4.048 4 C -0.015 4.015 5 C -0.457 4.457 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.887 5.887 9 Si 0.977 3.023 10 H -0.227 1.227 11 H -0.316 1.316 12 H -0.299 1.299 13 C 0.014 3.986 14 N -0.484 5.484 15 C 0.036 3.964 16 C -0.152 4.152 17 C -0.095 4.095 18 C 0.032 3.968 19 N -0.464 5.464 20 C 0.076 3.924 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.279 0.721 27 H 0.167 0.833 28 H 0.177 0.823 29 H 0.163 0.837 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 2.223 16.548 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.064 4.064 3 C -0.156 4.156 4 C -0.021 4.021 5 C -0.490 4.490 6 H 0.073 0.927 7 C -0.153 4.153 8 N -0.518 5.518 9 Si 0.808 3.192 10 H -0.151 1.151 11 H -0.247 1.247 12 H -0.226 1.226 13 C -0.119 4.119 14 N -0.194 5.194 15 C -0.130 4.130 16 C -0.173 4.173 17 C -0.124 4.124 18 C -0.080 4.080 19 N -0.147 5.147 20 C -0.065 4.065 21 H 0.097 0.903 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.184 0.816 28 H 0.194 0.806 29 H 0.180 0.820 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.110 2.006 15.682 15.810 hybrid contribution -0.248 0.522 0.171 0.603 sum -0.359 2.529 15.852 16.057 Atomic orbital electron populations 1.21641 0.94613 1.02005 1.00944 1.19785 0.96063 0.88317 1.02243 1.20855 1.13275 0.97305 0.84130 1.18152 1.01107 0.89742 0.93141 1.18332 1.43762 0.96560 0.90388 0.92747 1.26307 0.93153 1.01842 0.94046 1.69817 1.42038 1.38242 1.01716 0.85311 0.76966 0.81813 0.75083 1.15077 1.24717 1.22588 1.20657 1.05254 0.94786 0.91200 1.66912 1.10434 1.00109 1.41986 1.22929 1.00695 0.96279 0.93120 1.22045 1.01441 0.99283 0.94490 1.20816 1.00794 0.90245 1.00590 1.19271 1.04825 0.88970 0.94899 1.43170 1.55833 1.08898 1.06764 1.22130 1.03330 1.02222 0.78788 0.90263 0.92575 0.95221 0.92124 0.89445 0.91151 0.81612 0.80605 0.81971 0.90717 0.88623 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.90 71.98 0.71 -3.63 16 2 C -0.03 -0.93 5.90 29.85 0.18 -0.75 16 3 C -0.05 -2.13 6.21 42.13 0.26 -1.86 16 4 C -0.01 -0.80 5.22 -19.95 -0.10 -0.90 16 5 C -0.46 -28.14 9.50 23.30 0.22 -27.92 16 6 H 0.05 3.52 7.71 -2.91 -0.02 3.50 16 7 C 0.06 3.41 5.51 85.18 0.47 3.88 16 8 N -0.89 -55.73 13.94 21.81 0.30 -55.43 16 9 Si 0.98 53.46 24.04 68.60 1.65 55.11 16 10 H -0.23 -11.94 5.89 99.48 0.59 -11.35 16 11 H -0.32 -16.76 7.11 99.48 0.71 -16.06 16 12 H -0.30 -17.10 6.69 99.48 0.67 -16.44 16 13 C 0.01 0.74 5.49 42.06 0.23 0.97 16 14 N -0.48 -24.35 5.66 -184.44 -1.04 -25.39 16 15 C 0.04 1.40 11.12 84.81 0.94 2.34 16 16 C -0.15 -4.56 10.09 22.38 0.23 -4.34 16 17 C -0.10 -3.02 10.03 22.55 0.23 -2.79 16 18 C 0.03 1.35 6.78 38.94 0.26 1.61 16 19 N -0.46 -17.42 3.15 -521.46 -1.64 -19.06 16 20 C 0.08 1.75 10.76 127.77 1.37 3.12 16 21 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 2.40 7.62 -2.39 -0.02 2.38 16 25 H 0.09 2.40 6.89 -2.39 -0.02 2.38 16 26 H 0.28 16.25 8.30 -92.71 -0.77 15.48 16 27 H 0.17 5.26 8.06 -2.91 -0.02 5.24 16 28 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.16 3.54 8.05 -2.91 -0.02 3.52 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.85 6.84 -2.39 -0.02 1.84 16 32 H 0.09 1.71 8.06 -2.39 -0.02 1.69 16 Total: -1.00 -78.46 265.13 5.22 -73.24 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 0.95 Total: 1.79 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 5.00 Total: -30.26 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -2.38 Total: -99.88 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 1.65 Total: 55.11 kcal Total: -78.46 5.22 -73.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996926.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.279 kcal (2) G-P(sol) polarization free energy of solvation -78.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds