Wall clock time and date at job start Mon Mar 30 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36667 * 125.01665 * 2 1 4 4 H 0.96998 * 125.05001 * 359.97438 * 3 2 1 5 5 C 1.37540 * 109.89892 * 179.82339 * 3 2 1 6 6 C 1.38868 * 134.46494 * 180.11098 * 5 3 2 7 7 N 1.31741 * 120.27656 * 180.34070 * 6 5 3 8 8 C 1.32300 * 122.56748 * 0.02562 * 7 6 5 9 9 C 1.36637 * 121.32399 * 0.02562 * 8 7 6 10 10 C 1.39834 * 118.70029 * 359.96134 * 9 8 7 11 11 C 1.34460 * 125.01493 * 180.30598 * 2 1 3 12 12 C 1.50704 * 126.51665 * 359.95776 * 11 2 1 13 13 C 1.53001 * 109.46906 * 90.03026 * 12 11 2 14 14 C 1.50691 * 109.47316 * 180.02562 * 13 12 11 15 15 H 1.08011 * 120.00072 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00444 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99755 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00485 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46934 * 60.00050 * 18 16 14 20 20 H 1.48498 * 109.47581 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47194 * 300.00232 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.69704 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.69804 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.69785 * 1 2 3 25 25 H 1.08005 * 119.86324 * 0.36932 * 6 5 3 26 26 H 1.08003 * 119.33932 * 179.97438 * 8 7 6 27 27 H 1.08005 * 120.64995 * 179.97438 * 9 8 7 28 28 H 1.08999 * 109.46920 * 210.02654 * 12 11 2 29 29 H 1.08996 * 109.46807 * 330.03227 * 12 11 2 30 30 H 1.09003 * 109.47184 * 300.00310 * 13 12 11 31 31 H 1.08995 * 109.47106 * 59.99684 * 13 12 11 32 32 H 0.97002 * 119.99592 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2912 1.1193 0.0000 4 1 1.9606 2.0312 -0.0004 5 6 3.6190 0.7606 0.0040 6 6 4.8166 1.4637 0.0077 7 7 5.9654 0.8188 0.0043 8 6 6.0407 -0.5020 -0.0031 9 6 4.9158 -1.2776 -0.0082 10 6 3.6667 -0.6490 -0.0047 11 6 2.2785 -1.1012 -0.0059 12 6 1.8011 -2.5306 -0.0126 13 6 1.6395 -3.0074 -1.4574 14 6 1.1615 -4.4365 -1.4643 15 1 0.9905 -4.9533 -0.5313 16 6 0.9424 -5.0845 -2.6613 17 7 1.1510 -4.4555 -3.7974 18 14 0.3506 -6.8563 -2.6698 19 1 -0.9559 -6.9451 -1.9695 20 1 0.1935 -7.3191 -4.0721 21 1 1.3442 -7.7134 -1.9746 22 1 -0.3633 -0.0054 1.0277 23 1 -0.3633 -0.8873 -0.5185 24 1 -0.3633 0.8927 -0.5092 25 1 4.8061 2.5436 0.0138 26 1 7.0108 -0.9767 -0.0059 27 1 4.9899 -2.3551 -0.0147 28 1 2.5303 -3.1596 0.4981 29 1 0.8420 -2.5957 0.5010 30 1 0.9104 -2.3784 -1.9682 31 1 2.5986 -2.9422 -1.9710 32 1 0.9972 -4.9115 -4.6396 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:52 Heat of formation + Delta-G solvation = 44.422828 kcal Electronic energy + Delta-G solvation = -15213.202105 eV Core-core repulsion = 12752.297652 eV Total energy + Delta-G solvation = -2460.904453 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31399 -37.94017 -34.24594 -32.41652 -31.54716 -30.53696 -28.80346 -27.14440 -24.86251 -22.69027 -21.87964 -21.13654 -18.59881 -17.59315 -16.59153 -16.19274 -15.32656 -14.79879 -14.42060 -14.20499 -13.91392 -13.21302 -13.08095 -12.62406 -12.24082 -12.03556 -11.90893 -11.54864 -11.45811 -11.00141 -10.87136 -10.62505 -9.88246 -9.78099 -9.35785 -9.31140 -9.06797 -8.32495 -8.19310 -7.31651 -5.97482 -4.00638 1.25235 1.76208 2.98784 3.23633 3.34079 3.38829 3.41101 4.22460 4.47548 4.72459 4.90631 5.00525 5.21008 5.37755 5.44695 5.48108 5.58616 5.71100 5.92031 6.02559 6.15309 6.17874 6.41445 6.66226 6.70989 6.88767 6.96578 7.19231 7.29738 7.68443 7.72685 7.88149 8.03941 8.29455 8.43916 9.06927 9.63325 11.13339 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031406 B = 0.006525 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.336881 B = 4289.844145 C = 4861.333531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.073 3.927 3 N -0.585 5.585 4 H 0.412 0.588 5 C 0.038 3.962 6 C 0.100 3.900 7 N -0.474 5.474 8 C 0.040 3.960 9 C -0.108 4.108 10 C -0.067 4.067 11 C -0.138 4.138 12 C -0.044 4.044 13 C 0.032 3.968 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 10.874 8.089 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 N -0.189 5.189 4 H 0.248 0.752 5 C -0.072 4.072 6 C -0.068 4.068 7 N -0.183 5.183 8 C -0.110 4.110 9 C -0.128 4.128 10 C -0.079 4.079 11 C -0.145 4.145 12 C -0.082 4.082 13 C -0.005 4.005 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.091 0.909 23 H 0.114 0.886 24 H 0.082 0.918 25 H 0.164 0.836 26 H 0.168 0.832 27 H 0.153 0.847 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.622 11.346 7.892 14.067 hybrid contribution -1.204 -0.998 -0.240 1.582 sum 1.419 10.348 7.651 12.948 Atomic orbital electron populations 1.20486 0.87502 1.04190 1.02749 1.20240 0.93521 0.85173 1.04546 1.41500 1.03587 1.08096 1.65744 0.75160 1.19314 0.85948 0.95410 1.06539 1.21629 0.84826 0.99115 1.01209 1.67485 1.26892 1.11107 1.12838 1.21944 0.98268 0.88915 1.01843 1.21336 0.91037 1.01481 0.98987 1.19398 0.94121 0.91816 1.02540 1.20563 0.89453 0.96210 1.08240 1.20194 0.99185 0.87567 1.01263 1.19035 0.97109 0.95276 0.89121 1.21241 1.44756 0.97796 0.92227 0.92680 1.25018 0.95675 0.97970 0.95698 1.69971 1.49180 1.36985 0.97264 0.86681 0.79323 0.85223 0.76904 1.20255 1.21348 1.20237 0.90852 0.88592 0.91771 0.83560 0.83211 0.84719 0.92470 0.92364 0.96702 0.96629 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.99 36.01 0.36 -0.81 16 2 C 0.07 1.16 7.08 -81.77 -0.58 0.58 16 3 N -0.59 -8.02 6.06 -6.94 -0.04 -8.06 16 4 H 0.41 4.00 8.96 -40.82 -0.37 3.64 16 5 C 0.04 0.60 7.33 -84.01 -0.62 -0.01 16 6 C 0.10 1.46 11.25 -17.36 -0.20 1.27 16 7 N -0.47 -7.58 10.32 -13.40 -0.14 -7.72 16 8 C 0.04 0.62 11.11 -17.93 -0.20 0.42 16 9 C -0.11 -1.85 10.12 -39.56 -0.40 -2.25 16 10 C -0.07 -1.23 6.42 -105.13 -0.67 -1.91 16 11 C -0.14 -2.61 5.56 -102.85 -0.57 -3.18 16 12 C -0.04 -0.92 5.23 -27.88 -0.15 -1.06 16 13 C 0.03 0.82 4.95 -27.89 -0.14 0.68 16 14 C -0.52 -14.61 9.11 -34.45 -0.31 -14.92 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.10 1.41 7.66 -51.93 -0.40 1.02 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 26 H 0.15 1.89 8.06 -52.48 -0.42 1.47 16 27 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 279.39 15.07 4.21 4.21 Total: -1.00 -32.50 279.39 -7.91 -40.41 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.09 Total: 0.53 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -3.57 Total: -19.64 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.56 Total: -42.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.50 -7.91 -40.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.838 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds