Wall clock time and date at job start Mon Mar 30 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36667 * 125.01665 * 2 1 4 4 H 0.96998 * 125.05001 * 359.97438 * 3 2 1 5 5 C 1.37540 * 109.89892 * 179.82339 * 3 2 1 6 6 C 1.38868 * 134.46494 * 180.11098 * 5 3 2 7 7 N 1.31741 * 120.27656 * 180.34070 * 6 5 3 8 8 C 1.32300 * 122.56748 * 0.02562 * 7 6 5 9 9 C 1.36637 * 121.32399 * 0.02562 * 8 7 6 10 10 C 1.39834 * 118.70029 * 359.96134 * 9 8 7 11 11 C 1.34460 * 125.01493 * 180.30598 * 2 1 3 12 12 C 1.50704 * 126.51665 * 359.95776 * 11 2 1 13 13 C 1.53001 * 109.46906 * 90.03026 * 12 11 2 14 14 C 1.50691 * 109.47316 * 180.02562 * 13 12 11 15 15 H 1.08011 * 120.00072 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00444 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99755 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00485 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46934 * 60.00050 * 18 16 14 20 20 H 1.48498 * 109.47581 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47194 * 300.00232 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.69704 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.69804 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.69785 * 1 2 3 25 25 H 1.08005 * 119.86324 * 0.36932 * 6 5 3 26 26 H 1.08003 * 119.33932 * 179.97438 * 8 7 6 27 27 H 1.08005 * 120.64995 * 179.97438 * 9 8 7 28 28 H 1.08999 * 109.46920 * 210.02654 * 12 11 2 29 29 H 1.08996 * 109.46807 * 330.03227 * 12 11 2 30 30 H 1.09003 * 109.47184 * 300.00310 * 13 12 11 31 31 H 1.08995 * 109.47106 * 59.99684 * 13 12 11 32 32 H 0.97002 * 119.99592 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2912 1.1193 0.0000 4 1 1.9606 2.0312 -0.0004 5 6 3.6190 0.7606 0.0040 6 6 4.8166 1.4637 0.0077 7 7 5.9654 0.8188 0.0043 8 6 6.0407 -0.5020 -0.0031 9 6 4.9158 -1.2776 -0.0082 10 6 3.6667 -0.6490 -0.0047 11 6 2.2785 -1.1012 -0.0059 12 6 1.8011 -2.5306 -0.0126 13 6 1.6395 -3.0074 -1.4574 14 6 1.1615 -4.4365 -1.4643 15 1 0.9905 -4.9533 -0.5313 16 6 0.9424 -5.0845 -2.6613 17 7 1.1510 -4.4555 -3.7974 18 14 0.3506 -6.8563 -2.6698 19 1 -0.9559 -6.9451 -1.9695 20 1 0.1935 -7.3191 -4.0721 21 1 1.3442 -7.7134 -1.9746 22 1 -0.3633 -0.0054 1.0277 23 1 -0.3633 -0.8873 -0.5185 24 1 -0.3633 0.8927 -0.5092 25 1 4.8061 2.5436 0.0138 26 1 7.0108 -0.9767 -0.0059 27 1 4.9899 -2.3551 -0.0147 28 1 2.5303 -3.1596 0.4981 29 1 0.8420 -2.5957 0.5010 30 1 0.9104 -2.3784 -1.9682 31 1 2.5986 -2.9422 -1.9710 32 1 0.9972 -4.9115 -4.6396 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:52 Heat of formation + Delta-G solvation = 24.133706 kcal Electronic energy + Delta-G solvation = -15214.081907 eV Core-core repulsion = 12752.297652 eV Total energy + Delta-G solvation = -2461.784255 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.54636 -39.15857 -36.07296 -34.20337 -32.79042 -32.00107 -30.25856 -28.45786 -26.71853 -23.92684 -23.42436 -22.72512 -19.99415 -18.84951 -18.37006 -17.76206 -16.55201 -16.52629 -15.95453 -15.54410 -15.12038 -14.61390 -14.53356 -14.24891 -13.92723 -13.48187 -13.09257 -12.94694 -12.93274 -12.67120 -12.63795 -12.38198 -11.69097 -11.65517 -11.20875 -10.81612 -10.57425 -10.51534 -9.40317 -8.64336 -8.16174 -6.28910 0.01569 0.51925 1.41460 1.44784 1.52427 1.66847 2.09052 2.43352 2.98419 3.15763 3.60215 3.72898 3.83586 4.03504 4.21844 4.32043 4.42077 4.69119 4.70348 4.75976 4.82119 4.93749 5.02660 5.12919 5.17908 5.32345 5.53343 5.63085 5.70041 5.83567 5.89018 6.03652 6.27194 6.66376 6.88684 7.08650 7.40537 8.94419 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031406 B = 0.006525 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.336881 B = 4289.844145 C = 4861.333531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 N -0.564 5.564 4 H 0.434 0.566 5 C 0.029 3.971 6 C 0.113 3.887 7 N -0.490 5.490 8 C 0.044 3.956 9 C -0.137 4.137 10 C -0.098 4.098 11 C -0.193 4.193 12 C -0.025 4.025 13 C 0.043 3.957 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.964 3.036 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.268 1.268 22 H 0.100 0.900 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.188 0.812 26 H 0.175 0.825 27 H 0.128 0.872 28 H 0.049 0.951 29 H 0.069 0.931 30 H -0.008 1.008 31 H -0.024 1.024 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 11.999 9.053 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.015 4.015 3 N -0.170 5.170 4 H 0.275 0.725 5 C -0.081 4.081 6 C -0.055 4.055 7 N -0.199 5.199 8 C -0.104 4.104 9 C -0.157 4.157 10 C -0.109 4.109 11 C -0.199 4.199 12 C -0.063 4.063 13 C 0.006 3.994 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.789 3.211 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.193 1.193 22 H 0.118 0.882 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.205 0.795 26 H 0.192 0.808 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.010 0.990 31 H -0.005 1.005 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.956 12.504 8.876 15.458 hybrid contribution -0.986 -1.247 -0.542 1.680 sum 0.970 11.257 8.333 14.039 Atomic orbital electron populations 1.20589 0.85205 1.04511 1.04539 1.20603 0.94831 0.84938 1.01090 1.41415 1.02614 1.08783 1.64188 0.72479 1.19462 0.87173 0.94451 1.07033 1.22284 0.83794 1.00860 0.98586 1.67600 1.27530 1.11055 1.13696 1.22302 0.98776 0.89021 1.00339 1.21436 0.91656 1.01525 1.01105 1.19720 0.94255 0.93622 1.03341 1.20430 0.90711 0.95886 1.12920 1.19813 0.99596 0.89339 0.97554 1.18842 0.94045 0.94528 0.91971 1.21700 1.44602 0.98943 0.92736 0.91891 1.25986 0.95669 1.02911 0.95189 1.70122 1.50331 1.39096 0.97985 0.85513 0.79322 0.79182 0.77115 1.18762 1.21034 1.19329 0.88166 0.90965 0.88741 0.79494 0.80820 0.85438 0.93256 0.91276 0.98964 1.00526 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.99 71.24 0.71 -1.42 16 2 C 0.10 2.91 7.08 40.94 0.29 3.20 16 3 N -0.56 -14.10 6.06 -175.88 -1.07 -15.16 16 4 H 0.43 6.83 8.96 -92.71 -0.83 5.99 16 5 C 0.03 0.88 7.33 39.09 0.29 1.17 16 6 C 0.11 3.02 11.25 84.86 0.95 3.97 16 7 N -0.49 -14.86 10.32 -196.32 -2.03 -16.89 16 8 C 0.04 1.36 11.11 84.25 0.94 2.30 16 9 C -0.14 -4.84 10.12 22.28 0.23 -4.62 16 10 C -0.10 -3.65 6.42 -20.20 -0.13 -3.78 16 11 C -0.19 -7.40 5.56 -18.72 -0.10 -7.51 16 12 C -0.03 -1.08 5.23 29.85 0.16 -0.93 16 13 C 0.04 2.35 4.95 29.85 0.15 2.50 16 14 C -0.54 -31.10 9.11 25.60 0.23 -30.86 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.00 0.00 5.46 84.65 0.46 0.46 16 17 N -0.94 -57.88 13.29 21.45 0.28 -57.60 16 18 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 2.09 7.66 -2.39 -0.02 2.07 16 24 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 26 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 27 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.75 7.70 -2.39 -0.02 2.73 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -72.20 279.39 3.68 -68.52 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.29 Total: 10.22 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 4.17 Total: -35.50 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -2.81 Total: -89.65 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.20 3.68 -68.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.656 kcal (2) G-P(sol) polarization free energy of solvation -72.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds