Wall clock time and date at job start Mon Mar 30 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50691 * 109.47327 * 2 1 4 4 N 1.30577 * 125.65637 * 88.83156 * 3 2 1 5 5 N 1.40061 * 109.58709 * 180.02562 * 4 3 2 6 6 C 1.46496 * 126.00617 * 180.02562 * 5 4 3 7 7 C 1.37170 * 107.98492 * 359.97438 * 5 4 3 8 8 C 1.39314 * 133.71836 * 180.02562 * 7 5 4 9 9 C 1.38154 * 120.98558 * 179.97438 * 8 7 5 10 10 C 1.37851 * 121.54479 * 359.97438 * 9 8 7 11 11 C 1.40665 * 120.14914 * 0.02562 * 10 9 8 12 12 C 1.40569 * 120.69866 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99940 * 209.65931 * 12 11 10 14 14 C 1.40098 * 120.00001 * 29.65690 * 12 11 10 15 15 N 1.30773 * 120.00009 * 12.29821 * 14 12 11 16 16 Si 1.86801 * 120.00001 * 192.29895 * 14 12 11 17 17 H 1.48494 * 109.47336 * 90.00029 * 16 14 12 18 18 H 1.48503 * 109.46911 * 210.00261 * 16 14 12 19 19 H 1.48496 * 109.47063 * 330.00034 * 16 14 12 20 20 C 1.40557 * 125.65058 * 268.83911 * 3 2 1 21 21 H 1.08999 * 109.47529 * 300.00051 * 1 2 3 22 22 H 1.08997 * 109.47893 * 60.00228 * 1 2 3 23 23 H 1.09004 * 109.47657 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47183 * 239.99609 * 2 1 3 25 25 H 1.09001 * 109.47002 * 119.99843 * 2 1 3 26 26 H 1.09001 * 109.46719 * 269.99575 * 6 5 4 27 27 H 1.08996 * 109.47677 * 29.99565 * 6 5 4 28 28 H 1.08997 * 109.47088 * 150.00045 * 6 5 4 29 29 H 1.08001 * 119.51376 * 0.02562 * 8 7 5 30 30 H 1.07999 * 119.22783 * 180.02562 * 9 8 7 31 31 H 1.08007 * 119.92640 * 179.74787 * 10 9 8 32 32 H 0.96995 * 120.00014 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2656 2.1455 1.0608 5 7 2.7212 3.4120 0.6731 6 6 3.0895 4.5075 1.5734 7 6 2.7631 3.4458 -0.6975 8 6 3.1272 4.4186 -1.6259 9 6 3.0676 4.1647 -2.9826 10 6 2.6483 2.9454 -3.4704 11 6 2.2674 1.9226 -2.5830 12 6 1.8385 0.6748 -3.0677 13 1 1.1286 0.0904 -2.5012 14 6 2.3319 0.1893 -4.2858 15 7 3.3586 0.7678 -4.8525 16 14 1.5230 -1.2844 -5.1002 17 1 0.4441 -0.8182 -6.0078 18 1 2.5372 -2.0363 -5.8822 19 1 0.9448 -2.1704 -4.0582 20 6 2.3272 2.1854 -1.1419 21 1 -0.3634 0.5138 0.8899 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2120 5.1215 1.7763 27 1 3.4698 4.0970 2.5087 28 1 3.8604 5.1192 1.1048 29 1 3.4619 5.3854 -1.2800 30 1 3.3570 4.9393 -3.6773 31 1 2.6079 2.7766 -4.5364 32 1 3.7005 0.4314 -5.6956 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260003711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:15 Heat of formation + Delta-G solvation = 68.085156 kcal Electronic energy + Delta-G solvation = -15790.399595 eV Core-core repulsion = 13330.521218 eV Total energy + Delta-G solvation = -2459.878377 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95538 -35.81280 -34.25654 -33.24179 -30.85864 -29.42794 -28.32620 -25.61743 -25.13673 -22.71066 -21.17804 -20.44214 -18.58472 -17.06429 -15.73452 -15.52256 -14.81472 -14.52339 -13.72439 -13.55500 -13.39467 -12.97978 -12.55046 -12.25689 -12.16137 -11.62507 -11.44040 -11.29662 -11.23294 -10.66429 -10.57699 -10.47024 -10.11986 -9.98518 -9.60790 -9.38659 -9.26234 -8.39984 -7.24494 -6.90463 -6.68251 -4.45363 2.30830 2.91313 3.00032 3.02772 3.26247 3.48652 3.75622 3.80476 4.53856 5.26967 5.54398 5.64072 5.74786 5.76045 5.87021 6.02550 6.07880 6.23727 6.32518 6.48769 6.58986 6.66226 6.77956 6.90417 6.95003 7.01213 7.21050 7.49433 7.76738 7.86853 7.96024 8.13020 8.35210 8.54445 8.68701 8.79108 8.98773 9.99904 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.010448 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.075116 B = 2679.300919 C = 3574.841856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C 0.122 3.878 4 N -0.327 5.327 5 N -0.431 5.431 6 C 0.127 3.873 7 C 0.163 3.837 8 C -0.294 4.294 9 C -0.035 4.035 10 C -0.228 4.228 11 C 0.180 3.820 12 C -0.436 4.436 13 H 0.091 0.909 14 C 0.073 3.927 15 N -0.772 5.772 16 Si 0.912 3.088 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.258 1.258 20 C -0.254 4.254 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -0.072 3.005 3.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.049 4.049 4 N -0.144 5.144 5 N -0.219 5.219 6 C -0.015 4.015 7 C 0.049 3.951 8 C -0.319 4.319 9 C -0.056 4.056 10 C -0.249 4.249 11 C 0.175 3.825 12 C -0.464 4.464 13 H 0.109 0.891 14 C -0.148 4.148 15 N -0.395 5.395 16 Si 0.735 3.265 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.181 1.181 20 C -0.262 4.262 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.841 0.077 4.229 4.613 hybrid contribution -0.031 -0.293 -1.210 1.246 sum -1.873 -0.216 3.019 3.559 Atomic orbital electron populations 1.21664 0.95123 1.00957 1.02079 1.20038 0.95547 0.89871 1.03049 1.21792 0.97200 0.95776 0.90109 1.76580 1.23294 0.91135 1.23342 1.47845 1.60378 1.10696 1.03000 1.21334 0.99669 0.87134 0.93406 1.18657 0.97319 0.96133 0.82966 1.19038 1.23036 0.97937 0.91859 1.20365 0.95731 0.96276 0.93224 1.20931 1.12330 0.92439 0.99232 1.18057 0.85363 0.92063 0.87053 1.19728 1.21556 1.02332 1.02804 0.89072 1.26072 0.93647 0.98681 0.96393 1.69817 1.17046 1.37112 1.15572 0.86235 0.79804 0.80577 0.79861 1.19016 1.20074 1.18117 1.19713 1.17999 0.94402 0.94106 0.93318 0.91964 0.92789 0.88615 0.91905 0.92999 0.91002 0.90989 0.89705 0.89072 0.86455 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.62 37.15 0.36 -2.03 16 2 C -0.05 -0.89 5.75 -27.89 -0.16 -1.05 16 3 C 0.12 2.87 6.47 -82.26 -0.53 2.34 16 4 N -0.33 -7.67 12.47 33.77 0.42 -7.25 16 5 N -0.43 -9.75 4.08 -65.50 -0.27 -10.01 16 6 C 0.13 2.12 11.45 59.84 0.69 2.81 16 7 C 0.16 4.06 6.88 -84.19 -0.58 3.48 16 8 C -0.29 -6.93 9.98 -39.21 -0.39 -7.33 16 9 C -0.04 -0.83 9.94 -39.75 -0.40 -1.22 16 10 C -0.23 -5.86 8.65 -38.81 -0.34 -6.19 16 11 C 0.18 4.72 5.68 -104.73 -0.60 4.12 16 12 C -0.44 -10.75 8.00 -38.01 -0.30 -11.05 16 13 H 0.09 2.11 5.31 -52.49 -0.28 1.83 16 14 C 0.07 1.71 5.22 -17.31 -0.09 1.62 16 15 N -0.77 -18.82 11.01 55.56 0.61 -18.21 16 16 Si 0.91 17.33 29.58 -169.99 -5.03 12.30 16 17 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 C -0.25 -6.53 6.19 -104.77 -0.65 -7.18 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.10 1.92 6.03 -51.93 -0.31 1.61 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.12 3.04 6.38 -52.48 -0.33 2.70 16 32 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 LS Contribution 270.95 15.07 4.08 4.08 Total: -1.00 -28.82 270.95 -7.01 -35.83 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.84 Total: 4.96 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.99 Total: -21.69 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.77 Total: -35.48 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.82 -7.01 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.917 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds