Wall clock time and date at job start Mon Mar 30 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50691 * 109.47327 * 2 1 4 4 N 1.30577 * 125.65637 * 88.83156 * 3 2 1 5 5 N 1.40061 * 109.58709 * 180.02562 * 4 3 2 6 6 C 1.46496 * 126.00617 * 180.02562 * 5 4 3 7 7 C 1.37170 * 107.98492 * 359.97438 * 5 4 3 8 8 C 1.39314 * 133.71836 * 180.02562 * 7 5 4 9 9 C 1.38154 * 120.98558 * 179.97438 * 8 7 5 10 10 C 1.37851 * 121.54479 * 359.97438 * 9 8 7 11 11 C 1.40665 * 120.14914 * 0.02562 * 10 9 8 12 12 C 1.40569 * 120.69866 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99940 * 209.65931 * 12 11 10 14 14 C 1.40098 * 120.00001 * 29.65690 * 12 11 10 15 15 N 1.30773 * 120.00009 * 12.29821 * 14 12 11 16 16 Si 1.86801 * 120.00001 * 192.29895 * 14 12 11 17 17 H 1.48494 * 109.47336 * 90.00029 * 16 14 12 18 18 H 1.48503 * 109.46911 * 210.00261 * 16 14 12 19 19 H 1.48496 * 109.47063 * 330.00034 * 16 14 12 20 20 C 1.40557 * 125.65058 * 268.83911 * 3 2 1 21 21 H 1.08999 * 109.47529 * 300.00051 * 1 2 3 22 22 H 1.08997 * 109.47893 * 60.00228 * 1 2 3 23 23 H 1.09004 * 109.47657 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47183 * 239.99609 * 2 1 3 25 25 H 1.09001 * 109.47002 * 119.99843 * 2 1 3 26 26 H 1.09001 * 109.46719 * 269.99575 * 6 5 4 27 27 H 1.08996 * 109.47677 * 29.99565 * 6 5 4 28 28 H 1.08997 * 109.47088 * 150.00045 * 6 5 4 29 29 H 1.08001 * 119.51376 * 0.02562 * 8 7 5 30 30 H 1.07999 * 119.22783 * 180.02562 * 9 8 7 31 31 H 1.08007 * 119.92640 * 179.74787 * 10 9 8 32 32 H 0.96995 * 120.00014 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2656 2.1455 1.0608 5 7 2.7212 3.4120 0.6731 6 6 3.0895 4.5075 1.5734 7 6 2.7631 3.4458 -0.6975 8 6 3.1272 4.4186 -1.6259 9 6 3.0676 4.1647 -2.9826 10 6 2.6483 2.9454 -3.4704 11 6 2.2674 1.9226 -2.5830 12 6 1.8385 0.6748 -3.0677 13 1 1.1286 0.0904 -2.5012 14 6 2.3319 0.1893 -4.2858 15 7 3.3586 0.7678 -4.8525 16 14 1.5230 -1.2844 -5.1002 17 1 0.4441 -0.8182 -6.0078 18 1 2.5372 -2.0363 -5.8822 19 1 0.9448 -2.1704 -4.0582 20 6 2.3272 2.1854 -1.1419 21 1 -0.3634 0.5138 0.8899 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2120 5.1215 1.7763 27 1 3.4698 4.0970 2.5087 28 1 3.8604 5.1192 1.1048 29 1 3.4619 5.3854 -1.2800 30 1 3.3570 4.9393 -3.6773 31 1 2.6079 2.7766 -4.5364 32 1 3.7005 0.4314 -5.6956 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:15 Heat of formation + Delta-G solvation = 52.356023 kcal Electronic energy + Delta-G solvation = -15791.081661 eV Core-core repulsion = 13330.521218 eV Total energy + Delta-G solvation = -2460.560443 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.72727 -37.62733 -35.92431 -34.96907 -32.37608 -31.23591 -30.14671 -27.22794 -26.89443 -24.26538 -22.98038 -22.25739 -20.32512 -18.82231 -17.49966 -17.30322 -16.45101 -16.14798 -15.48514 -15.15839 -14.95575 -14.59039 -14.14322 -13.84028 -13.62945 -13.21823 -13.08503 -12.90160 -12.78002 -12.23850 -12.11157 -11.98558 -11.91014 -11.75504 -11.41208 -11.15198 -11.01770 -10.16812 -9.10813 -8.68088 -8.49536 -6.32591 0.49500 1.21910 1.44115 1.56843 1.58516 1.88811 1.95499 2.21344 2.74216 3.68152 3.76075 4.15740 4.27612 4.34694 4.46531 4.57838 4.61353 4.70110 4.73412 4.85135 4.95037 5.06495 5.08996 5.20161 5.30392 5.39133 5.43428 5.66359 5.94201 6.07573 6.12927 6.25435 6.56469 6.72897 6.83536 6.93902 7.16762 8.26182 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.010448 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.075116 B = 2679.300919 C = 3574.841856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.045 4.045 3 C 0.111 3.889 4 N -0.335 5.335 5 N -0.433 5.433 6 C 0.116 3.884 7 C 0.142 3.858 8 C -0.300 4.300 9 C -0.039 4.039 10 C -0.257 4.257 11 C 0.153 3.847 12 C -0.454 4.454 13 H 0.100 0.900 14 C 0.034 3.966 15 N -0.803 5.803 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.247 1.247 20 C -0.287 4.287 21 H 0.050 0.950 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -0.697 3.552 4.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.060 4.060 4 N -0.152 5.152 5 N -0.222 5.222 6 C -0.025 4.025 7 C 0.027 3.973 8 C -0.324 4.324 9 C -0.059 4.059 10 C -0.278 4.278 11 C 0.147 3.853 12 C -0.482 4.482 13 H 0.118 0.882 14 C -0.184 4.184 15 N -0.427 5.427 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.170 1.170 20 C -0.296 4.296 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.314 -0.521 4.810 5.363 hybrid contribution 0.172 -0.017 -1.315 1.326 sum -2.143 -0.538 3.495 4.135 Atomic orbital electron populations 1.21605 0.93255 1.02875 1.01213 1.20139 0.97088 0.87778 1.03419 1.22318 0.97055 0.97304 0.89325 1.76507 1.23454 0.91786 1.23477 1.48292 1.59560 1.11369 1.02937 1.21749 1.01138 0.86174 0.93398 1.19005 0.97580 0.96356 0.84363 1.19327 1.22626 0.98819 0.91615 1.20664 0.94894 0.96284 0.94085 1.20953 1.14515 0.93606 0.98697 1.18428 0.86108 0.93017 0.87709 1.20019 1.21971 1.02267 1.03961 0.88245 1.26966 0.93686 1.01451 0.96298 1.69873 1.18044 1.38646 1.16138 0.85162 0.78773 0.76889 0.78880 1.18586 1.19377 1.17000 1.20129 1.19080 0.95723 0.94653 0.93128 0.93801 0.89454 0.89581 0.90020 0.91127 0.89128 0.89284 0.87097 0.86412 0.87677 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.62 71.98 0.69 -3.60 16 2 C -0.05 -1.72 5.75 29.84 0.17 -1.55 16 3 C 0.11 5.21 6.47 43.31 0.28 5.49 16 4 N -0.34 -15.49 12.47 -47.09 -0.59 -16.07 16 5 N -0.43 -19.15 4.08 -361.14 -1.47 -20.62 16 6 C 0.12 3.61 11.45 127.77 1.46 5.07 16 7 C 0.14 7.06 6.88 39.14 0.27 7.33 16 8 C -0.30 -13.95 9.98 22.51 0.22 -13.73 16 9 C -0.04 -1.83 9.94 22.16 0.22 -1.61 16 10 C -0.26 -13.53 8.65 22.77 0.20 -13.33 16 11 C 0.15 8.22 5.68 -19.93 -0.11 8.11 16 12 C -0.45 -22.78 8.00 23.29 0.19 -22.59 16 13 H 0.10 4.64 5.31 -2.91 -0.02 4.63 16 14 C 0.03 1.61 5.22 85.30 0.45 2.05 16 15 N -0.80 -39.74 11.01 21.85 0.24 -39.50 16 16 Si 0.98 34.90 29.58 68.60 2.03 36.93 16 17 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 18 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 19 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 20 C -0.29 -15.02 6.19 -19.96 -0.12 -15.14 16 21 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.04 1.58 7.65 -2.39 -0.02 1.56 16 23 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 24 H 0.09 3.43 6.03 -2.39 -0.01 3.42 16 25 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.11 5.66 6.38 -2.91 -0.02 5.64 16 32 H 0.29 12.99 8.29 -92.71 -0.77 12.22 16 Total: -1.00 -62.44 270.95 5.25 -57.19 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.12 Total: 25.59 kcal Atomic # 6 Polarization: -47.42 SS G_CDS: 3.91 Total: -43.51 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -1.82 Total: -76.20 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -62.44 5.25 -57.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.546 kcal (2) G-P(sol) polarization free energy of solvation -62.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds