Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00204 * 2 1 4 4 H 1.48497 * 109.46948 * 239.99799 * 3 2 1 5 5 H 1.48497 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46771 * 119.99996 * 3 2 1 7 7 C 1.37881 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47335 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47713 * 180.02562 * 10 9 7 12 12 C 1.34259 * 126.49121 * 265.02625 * 11 10 9 13 13 N 1.36743 * 109.91264 * 179.97438 * 12 11 10 14 14 H 0.96996 * 125.08221 * 180.02562 * 13 12 11 15 15 C 1.37845 * 109.83848 * 359.97438 * 13 12 11 16 16 C 1.40480 * 107.18108 * 0.02562 * 15 13 12 17 17 C 1.39783 * 119.97485 * 179.97438 * 16 15 13 18 18 C 1.36634 * 119.90486 * 0.02562 * 17 16 15 19 19 C 1.38754 * 120.58314 * 359.97438 * 18 17 16 20 20 C 1.38410 * 120.57683 * 0.30464 * 19 18 17 21 21 N 1.39831 * 120.17586 * 179.65880 * 20 19 18 22 22 H 0.97005 * 119.99490 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47576 * 60.00334 * 9 7 2 24 24 H 1.09002 * 109.47164 * 299.99987 * 9 7 2 25 25 H 1.09006 * 109.47289 * 59.99297 * 10 9 7 26 26 H 1.09002 * 109.46657 * 299.99897 * 10 9 7 27 27 H 1.07999 * 125.04123 * 359.97351 * 12 11 10 28 28 H 1.08010 * 120.04878 * 180.02562 * 17 16 15 29 29 H 1.07993 * 119.71063 * 179.97438 * 18 17 16 30 30 H 1.07997 * 119.70639 * 180.02562 * 19 18 17 31 31 H 0.96992 * 120.00475 * 179.77946 * 21 20 19 32 32 H 0.97005 * 119.99593 * 359.77281 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 6 1.1732 -5.7058 1.0738 13 7 0.4882 -6.8235 0.6846 14 1 0.1524 -7.5084 1.2838 15 6 0.3453 -6.8309 -0.6864 16 6 0.9673 -5.6697 -1.1747 17 6 0.9798 -5.4089 -2.5479 18 6 0.3862 -6.2843 -3.4129 19 6 -0.2308 -7.4340 -2.9412 20 6 -0.2613 -7.7111 -1.5854 21 7 -0.8916 -8.8687 -1.1185 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 1.4211 -5.4544 2.0945 28 1 1.4580 -4.5168 -2.9247 29 1 0.3974 -6.0795 -4.4732 30 1 -0.6953 -8.1164 -3.6376 31 1 -0.9087 -9.0620 -0.1682 32 1 -1.3120 -9.4783 -1.7451 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260008075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = 18.986774 kcal Electronic energy + Delta-G solvation = -15067.201784 eV Core-core repulsion = 12605.194341 eV Total energy + Delta-G solvation = -2462.007443 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.08807 -38.13547 -36.03694 -35.26471 -33.62276 -30.63311 -29.76302 -28.86215 -26.68398 -23.28101 -23.18760 -22.77300 -20.00016 -19.03465 -18.33873 -17.55074 -17.00372 -16.48687 -16.20539 -15.53099 -15.42751 -14.84798 -14.50557 -14.29172 -13.78640 -13.35152 -13.12188 -12.81316 -12.76743 -12.48022 -12.42121 -12.08508 -11.67131 -11.52402 -11.42623 -11.14171 -10.50259 -9.48564 -9.00879 -8.15222 -7.80875 -6.26578 0.45190 0.82406 1.41980 1.46185 1.53829 1.90443 2.30468 2.45382 3.00908 3.13536 3.17715 3.96734 4.16925 4.20570 4.40898 4.58384 4.69254 4.85652 4.98890 5.03932 5.12006 5.16652 5.26667 5.52678 5.55903 5.76152 5.83924 5.90895 5.93113 6.06988 6.21338 6.31002 6.62724 6.84093 6.91418 7.03929 7.42464 8.97141 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041760 B = 0.005662 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.334816 B = 4944.447663 C = 5257.764296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.041 3.959 10 C -0.026 4.026 11 C -0.198 4.198 12 C 0.057 3.943 13 N -0.579 5.579 14 H 0.427 0.573 15 C 0.019 3.981 16 C -0.090 4.090 17 C -0.158 4.158 18 C -0.099 4.099 19 C -0.205 4.205 20 C 0.212 3.788 21 N -0.870 5.870 22 H 0.262 0.738 23 H -0.021 1.021 24 H -0.012 1.012 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.195 0.805 28 H 0.099 0.901 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.400 0.600 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -18.591 -0.814 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.004 3.996 10 C -0.064 4.064 11 C -0.205 4.205 12 C -0.070 4.070 13 N -0.184 5.184 14 H 0.266 0.734 15 C -0.090 4.090 16 C -0.096 4.096 17 C -0.179 4.179 18 C -0.118 4.118 19 C -0.230 4.230 20 C 0.106 3.894 21 N -0.412 5.412 22 H 0.071 0.929 23 H -0.003 1.003 24 H 0.006 0.994 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.212 0.788 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.228 0.772 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.719 -18.557 -0.711 18.584 hybrid contribution -0.143 0.696 0.345 0.790 sum -0.861 -17.861 -0.366 17.885 Atomic orbital electron populations 1.70134 1.07982 1.27690 1.51862 1.26020 0.95720 1.03430 0.94729 0.85481 0.78234 0.77921 0.79283 1.19223 1.20908 1.18843 1.21730 0.93622 0.92336 1.50371 0.91935 1.18871 0.94045 0.92534 0.94153 1.19783 0.96377 0.89629 1.00574 1.20690 1.08581 0.98937 0.92287 1.21889 0.97984 0.87523 0.99605 1.41344 1.50492 1.22019 1.04497 0.73409 1.17947 1.07667 0.98902 0.84449 1.19281 1.01274 0.95162 0.93891 1.20232 1.04993 1.00916 0.91787 1.20571 0.97629 0.93873 0.99742 1.20466 1.09085 1.00983 0.92493 1.16867 0.93908 0.87217 0.91367 1.42171 1.64568 1.23629 1.10827 0.92899 1.00254 0.99374 0.91581 0.93480 0.78820 0.88262 0.84400 0.83268 0.77219 0.75867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -32.31 9.11 25.60 0.23 -32.08 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.04 2.35 4.95 29.85 0.15 2.49 16 10 C -0.03 -1.17 5.68 29.85 0.17 -1.00 16 11 C -0.20 -8.00 5.57 -18.63 -0.10 -8.10 16 12 C 0.06 1.81 11.73 83.02 0.97 2.78 16 13 N -0.58 -15.29 6.08 -187.27 -1.14 -16.43 16 14 H 0.43 7.38 8.88 -92.71 -0.82 6.56 16 15 C 0.02 0.61 7.13 39.09 0.28 0.89 16 16 C -0.09 -3.56 6.35 -20.21 -0.13 -3.69 16 17 C -0.16 -6.06 10.05 22.27 0.22 -5.84 16 18 C -0.10 -3.00 9.97 22.02 0.22 -2.78 16 19 C -0.21 -5.33 9.87 22.43 0.22 -5.10 16 20 C 0.21 5.54 6.77 38.25 0.26 5.80 16 21 N -0.87 -14.18 9.10 -51.10 -0.46 -14.65 16 22 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 23 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 24 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 25 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.19 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.10 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.40 5.04 8.76 -92.71 -0.81 4.23 16 32 H 0.41 4.67 8.85 -92.70 -0.82 3.85 16 Total: -1.00 -75.41 279.30 2.37 -73.04 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -1.30 Total: 15.94 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 2.96 Total: -46.27 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -1.32 Total: -90.30 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.41 2.37 -73.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260008075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.029 kcal (2) G-P(sol) polarization free energy of solvation -75.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds