Wall clock time and date at job start Mon Mar 30 2020 03:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28260 * 122.72638 * 2 1 4 4 C 1.46972 * 110.19956 * 180.02562 * 3 2 1 5 5 C 1.54208 * 103.99298 * 359.92669 * 4 3 2 6 6 N 1.36449 * 122.71945 * 180.02562 * 2 1 3 7 7 C 1.39857 * 125.84650 * 359.96109 * 6 2 1 8 8 C 1.39304 * 119.94946 * 293.68834 * 7 6 2 9 9 C 1.38487 * 120.42638 * 179.72035 * 8 7 6 10 10 C 1.37693 * 120.32116 * 0.54854 * 9 8 7 11 11 C 1.40745 * 119.88957 * 359.72787 * 10 9 8 12 12 C 1.41403 * 120.21340 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00776 * 155.24127 * 12 11 10 14 14 C 1.39938 * 119.99822 * 335.24788 * 12 11 10 15 15 N 1.30827 * 119.99858 * 344.47080 * 14 12 11 16 16 Si 1.86794 * 120.00121 * 164.46833 * 14 12 11 17 17 H 1.48500 * 109.47279 * 60.00055 * 16 14 12 18 18 H 1.48495 * 109.47265 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47107 * 300.00054 * 16 14 12 20 20 C 1.38266 * 119.94678 * 113.95961 * 7 6 2 21 21 H 1.08997 * 109.46683 * 358.19981 * 1 2 3 22 22 H 1.09005 * 109.47076 * 118.19880 * 1 2 3 23 23 H 1.09001 * 109.47200 * 238.20140 * 1 2 3 24 24 H 1.08998 * 110.54728 * 118.59498 * 4 3 2 25 25 H 1.09002 * 110.54567 * 241.25750 * 4 3 2 26 26 H 1.08999 * 110.70143 * 118.46810 * 5 4 3 27 27 H 1.09008 * 110.69710 * 241.67886 * 5 4 3 28 28 H 1.07999 * 119.79341 * 359.97253 * 8 7 6 29 29 H 1.07995 * 119.84434 * 180.26019 * 9 8 7 30 30 H 1.07994 * 120.05681 * 179.74850 * 10 9 8 31 31 H 0.96998 * 120.00460 * 179.97438 * 15 14 12 32 32 H 1.08004 * 120.16019 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2004 1.0790 0.0000 4 6 3.6351 0.7602 -0.0006 5 6 3.6746 -0.7814 0.0009 6 7 2.2445 -1.1480 -0.0005 7 6 1.7335 -2.4498 -0.0003 8 6 1.0286 -2.9201 1.1054 9 6 0.5132 -4.2055 1.1138 10 6 0.7020 -5.0371 0.0327 11 6 1.4170 -4.5778 -1.0891 12 6 1.6145 -5.4259 -2.2032 13 1 1.7869 -5.0016 -3.1812 14 6 1.5863 -6.8153 -2.0386 15 7 1.6831 -7.3342 -0.8415 16 14 1.4103 -7.9290 -3.5279 17 1 2.5484 -7.7005 -4.4541 18 1 1.4066 -9.3472 -3.0878 19 1 0.1353 -7.6245 -4.2257 20 6 1.9335 -3.2700 -1.0953 21 1 -0.3632 1.0272 0.0323 22 1 -0.3633 -0.4856 -0.9057 23 1 -0.3634 -0.5415 0.8734 24 1 4.1142 1.1543 -0.8968 25 1 4.1154 1.1562 0.8942 26 1 4.1697 -1.1550 -0.8954 27 1 4.1686 -1.1532 0.8986 28 1 0.8794 -2.2768 1.9599 29 1 -0.0354 -4.5589 1.9742 30 1 0.3017 -6.0401 0.0455 31 1 1.6632 -8.2972 -0.7272 32 1 2.4833 -2.9077 -1.9514 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:41 Heat of formation + Delta-G solvation = 34.872064 kcal Electronic energy + Delta-G solvation = -15406.191177 eV Core-core repulsion = 12944.872572 eV Total energy + Delta-G solvation = -2461.318605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36471 -39.09540 -35.77402 -33.77216 -32.75627 -31.77501 -29.55357 -27.96734 -27.22625 -23.92864 -22.84704 -22.38185 -20.39406 -18.97431 -17.54344 -17.10235 -16.80768 -16.48502 -15.67675 -15.22063 -14.96815 -14.31744 -14.25074 -13.95721 -13.50852 -13.21521 -13.20615 -13.03471 -12.93558 -12.80865 -12.50738 -12.22975 -11.89084 -11.86726 -11.29211 -11.07626 -10.91722 -9.52996 -9.43689 -8.65722 -8.63203 -6.40822 0.86032 0.94349 1.38877 1.48762 1.51626 1.57557 2.16450 2.22798 2.68245 3.47018 3.64512 3.70028 4.08163 4.34956 4.45850 4.55754 4.58229 4.62181 4.70362 4.90911 4.92003 4.98432 5.04752 5.13347 5.21282 5.25238 5.37862 5.63342 5.93354 5.98641 6.10251 6.20667 6.56789 6.81038 6.90598 6.99102 7.07462 8.30638 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040194 B = 0.006568 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.462037 B = 4262.348784 C = 4514.939731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.370 3.630 3 N -0.609 5.609 4 C 0.029 3.971 5 C 0.075 3.925 6 N -0.597 5.597 7 C 0.178 3.822 8 C -0.232 4.232 9 C -0.092 4.092 10 C -0.184 4.184 11 C 0.092 3.908 12 C -0.498 4.498 13 H 0.073 0.927 14 C 0.038 3.962 15 N -0.823 5.823 16 Si 0.981 3.019 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.260 1.260 20 C -0.240 4.240 21 H 0.103 0.897 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.290 0.710 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 5.834 1.205 5.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.095 3.905 3 N -0.339 5.339 4 C -0.100 4.100 5 C -0.048 4.048 6 N -0.314 5.314 7 C 0.088 3.912 8 C -0.253 4.253 9 C -0.111 4.111 10 C -0.204 4.204 11 C 0.089 3.911 12 C -0.527 4.527 13 H 0.091 0.909 14 C -0.177 4.177 15 N -0.448 5.448 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.190 1.190 19 H -0.184 1.184 20 C -0.261 4.261 21 H 0.122 0.878 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.491 6.510 1.339 6.664 hybrid contribution 0.639 -1.545 -0.603 1.777 sum 0.149 4.965 0.736 5.021 Atomic orbital electron populations 1.20648 0.85235 1.05075 1.04069 1.23581 0.96615 0.82266 0.88026 1.74147 1.03506 1.24072 1.32185 1.23092 0.92235 0.91173 1.03519 1.22840 0.82176 0.97499 1.02267 1.45590 1.05852 1.03260 1.76694 1.17042 0.97839 0.82608 0.93759 1.20647 1.09728 0.96959 0.97977 1.20862 0.99114 0.93330 0.97751 1.21430 1.03189 1.00170 0.95612 1.17771 0.88689 0.91186 0.93453 1.19788 1.45503 0.91842 0.95610 0.90913 1.26703 0.91065 0.99927 1.00031 1.69835 1.35066 1.14768 1.25168 0.85259 0.80011 0.76697 0.77826 1.18686 1.18990 1.18406 1.21061 1.09765 0.96958 0.98327 0.87837 0.90278 0.89313 0.89098 0.88610 0.91321 0.90609 0.87034 0.86122 0.87272 0.89931 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.61 9.63 71.24 0.69 -1.92 16 2 C 0.37 12.79 7.61 138.31 1.05 13.84 16 3 N -0.61 -20.72 11.58 -335.40 -3.88 -24.60 16 4 C 0.03 0.85 8.05 86.70 0.70 1.55 16 5 C 0.08 2.45 7.72 86.57 0.67 3.12 16 6 N -0.60 -22.53 3.04 -501.76 -1.53 -24.06 16 7 C 0.18 7.69 5.34 38.12 0.20 7.90 16 8 C -0.23 -9.59 9.19 22.59 0.21 -9.38 16 9 C -0.09 -3.98 10.02 22.20 0.22 -3.76 16 10 C -0.18 -9.26 8.69 22.75 0.20 -9.06 16 11 C 0.09 4.84 5.58 -21.31 -0.12 4.72 16 12 C -0.50 -26.34 9.06 23.46 0.21 -26.12 16 13 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 14 C 0.04 1.86 5.19 85.25 0.44 2.31 16 15 N -0.82 -41.61 10.83 21.82 0.24 -41.37 16 16 Si 0.98 37.17 29.59 68.60 2.03 39.20 16 17 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 18 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 19 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 20 C -0.24 -11.67 9.69 22.86 0.22 -11.45 16 21 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 22 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 23 H 0.09 2.40 7.61 -2.39 -0.02 2.38 16 24 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.11 4.11 8.04 -2.91 -0.02 4.09 16 29 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 30 H 0.11 5.72 6.08 -2.91 -0.02 5.70 16 31 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 32 H 0.09 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -57.46 275.01 2.66 -54.81 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.11 Total: 24.29 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.69 Total: -28.27 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -5.17 Total: -90.03 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -57.46 2.66 -54.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.677 kcal (2) G-P(sol) polarization free energy of solvation -57.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds