Wall clock time and date at job start Mon Mar 30 2020 03:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30581 * 125.65657 * 2 1 4 4 N 1.40056 * 109.58632 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.00481 * 179.97438 * 4 3 2 6 6 C 1.37169 * 107.98534 * 0.02562 * 4 3 2 7 7 C 1.39320 * 133.71940 * 180.02562 * 6 4 3 8 8 C 1.38152 * 120.98499 * 180.25163 * 7 6 4 9 9 C 1.50697 * 119.22756 * 179.72543 * 8 7 6 10 10 C 1.37850 * 121.54372 * 359.43381 * 8 7 6 11 11 C 1.40663 * 120.14860 * 0.56597 * 10 8 7 12 12 C 1.40575 * 120.69619 * 179.70416 * 11 10 8 13 13 H 1.07999 * 120.00257 * 150.90179 * 12 11 10 14 14 C 1.40091 * 120.00024 * 330.89485 * 12 11 10 15 15 N 1.30771 * 120.00356 * 159.71057 * 14 12 11 16 16 Si 1.86810 * 120.00100 * 339.71317 * 14 12 11 17 17 H 1.48499 * 109.46707 * 90.75864 * 16 14 12 18 18 H 1.48494 * 109.46832 * 210.75921 * 16 14 12 19 19 H 1.48496 * 109.46914 * 330.75874 * 16 14 12 20 20 C 1.40556 * 125.64939 * 180.02562 * 2 1 3 21 21 H 1.08992 * 109.47261 * 95.96839 * 1 2 3 22 22 H 1.08995 * 109.47230 * 215.97633 * 1 2 3 23 23 H 1.09005 * 109.46995 * 335.97368 * 1 2 3 24 24 H 1.08993 * 109.47191 * 270.04572 * 5 4 3 25 25 H 1.09002 * 109.47269 * 30.04784 * 5 4 3 26 26 H 1.09000 * 109.46873 * 150.04401 * 5 4 3 27 27 H 1.08000 * 119.50685 * 359.97438 * 7 6 4 28 28 H 1.09001 * 109.46844 * 89.99882 * 9 8 7 29 29 H 1.09000 * 109.47316 * 209.99978 * 9 8 7 30 30 H 1.09007 * 109.46753 * 330.00305 * 9 8 7 31 31 H 1.08001 * 119.92604 * 180.30904 * 10 8 7 32 32 H 0.96996 * 120.00172 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2682 1.0610 0.0000 4 7 3.6140 0.6733 -0.0006 5 6 4.7697 1.5737 -0.0013 6 6 3.6599 -0.6976 -0.0015 7 6 4.6984 -1.6263 -0.0020 8 6 4.4391 -2.9833 -0.0082 9 6 5.5927 -3.9528 -0.0147 10 6 3.1498 -3.4711 -0.0026 11 6 2.0586 -2.5835 -0.0022 12 6 0.7391 -3.0684 -0.0028 13 1 -0.0498 -2.4879 0.4523 14 6 0.4474 -4.3047 -0.5937 15 7 -0.6464 -4.9431 -0.2683 16 14 1.6211 -5.0413 -1.8466 17 1 2.6088 -5.9052 -1.1513 18 1 0.8546 -5.8538 -2.8249 19 1 2.3330 -3.9501 -2.5592 20 6 2.3262 -1.1422 -0.0005 21 1 -0.3633 -0.1068 -1.0220 22 1 -0.3633 -0.8316 0.6037 23 1 -0.3633 0.9387 0.4184 24 1 5.0553 1.7975 -1.0291 25 1 4.5098 2.4989 0.5132 26 1 5.6037 1.0948 0.5115 27 1 5.7215 -1.2802 -0.0020 28 1 5.8724 -4.1916 1.0114 29 1 5.2974 -4.8654 -0.5326 30 1 6.4427 -3.5027 -0.5277 31 1 2.9771 -4.5372 -0.0026 32 1 -0.8482 -5.7993 -0.6772 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260032827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:20 Heat of formation + Delta-G solvation = 52.345716 kcal Electronic energy + Delta-G solvation = -15795.934551 eV Core-core repulsion = 13335.373660 eV Total energy + Delta-G solvation = -2460.560890 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.82988 -38.12697 -35.91730 -34.72082 -32.60084 -31.34278 -30.16169 -27.48481 -26.94199 -25.95890 -22.88660 -21.68022 -20.35169 -19.09439 -17.75619 -17.19751 -16.60568 -16.26725 -15.67905 -14.83178 -14.73360 -14.39071 -14.21669 -14.19221 -13.68560 -13.53319 -13.28228 -13.03910 -12.98296 -12.73744 -12.62788 -12.42574 -11.67580 -11.64340 -11.52786 -11.16275 -10.98478 -10.30972 -9.06386 -9.00159 -8.62570 -6.48659 0.33747 1.02567 1.29932 1.36798 1.52062 1.81864 1.83182 2.13751 2.54954 3.45748 3.73059 4.12888 4.21769 4.41301 4.44446 4.46765 4.59501 4.62908 4.75335 4.82200 4.84679 4.91829 4.99791 5.05434 5.07006 5.18609 5.38964 5.49388 5.75364 5.94439 6.08314 6.11488 6.31511 6.58731 6.66895 6.76477 7.05541 8.01558 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.011968 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.686467 B = 2339.018252 C = 3298.093088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.102 3.898 3 N -0.332 5.332 4 N -0.426 5.426 5 C 0.113 3.887 6 C 0.156 3.844 7 C -0.288 4.288 8 C 0.011 3.989 9 C -0.108 4.108 10 C -0.327 4.327 11 C 0.143 3.857 12 C -0.445 4.445 13 H 0.087 0.913 14 C 0.060 3.940 15 N -0.811 5.811 16 Si 0.964 3.036 17 H -0.251 1.251 18 H -0.275 1.275 19 H -0.266 1.266 20 C -0.287 4.287 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 2.900 -1.399 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 N -0.151 5.151 4 N -0.214 5.214 5 C -0.027 4.027 6 C 0.039 3.961 7 C -0.312 4.312 8 C 0.008 3.992 9 C -0.165 4.165 10 C -0.348 4.348 11 C 0.138 3.862 12 C -0.472 4.472 13 H 0.105 0.895 14 C -0.160 4.160 15 N -0.435 5.435 16 Si 0.788 3.212 17 H -0.176 1.176 18 H -0.201 1.201 19 H -0.190 1.190 20 C -0.296 4.296 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.140 0.860 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.986 4.152 -1.383 9.106 hybrid contribution 0.002 -1.115 -0.328 1.162 sum 7.987 3.037 -1.710 8.715 Atomic orbital electron populations 1.20277 0.85636 1.03064 1.03291 1.22346 0.97540 0.89559 0.97336 1.76572 0.87490 1.23180 1.27821 1.48371 1.04538 1.03004 1.65507 1.21831 0.84117 0.93434 1.03304 1.19025 0.95919 0.84440 0.96748 1.19270 0.95695 0.90711 1.25503 1.19584 0.94628 0.93589 0.91369 1.20847 0.95418 0.97255 1.02968 1.20742 0.92431 0.97741 1.23895 1.18302 0.93258 0.88785 0.85896 1.19681 0.94560 1.02067 1.30929 0.89514 1.26855 0.96638 0.95190 0.97364 1.69660 1.24754 1.13794 1.35255 0.85519 0.78427 0.79010 0.78223 1.17612 1.20100 1.19040 1.19991 0.92473 0.94228 1.22894 0.90241 0.90632 0.89947 0.90939 0.89044 0.88668 0.85997 0.90005 0.91947 0.90046 0.87756 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.53 9.83 71.24 0.70 -1.83 16 2 C 0.10 4.79 7.21 43.31 0.31 5.10 16 3 N -0.33 -14.94 12.47 -47.08 -0.59 -15.53 16 4 N -0.43 -17.76 4.08 -361.12 -1.47 -19.23 16 5 C 0.11 3.20 11.45 127.77 1.46 4.67 16 6 C 0.16 7.19 6.88 39.14 0.27 7.46 16 7 C -0.29 -12.01 9.59 22.51 0.22 -11.79 16 8 C 0.01 0.46 5.86 -19.98 -0.12 0.35 16 9 C -0.11 -3.35 9.96 71.23 0.71 -2.64 16 10 C -0.33 -15.66 6.98 22.77 0.16 -15.51 16 11 C 0.14 7.42 5.26 -19.93 -0.10 7.31 16 12 C -0.45 -23.56 9.07 23.29 0.21 -23.35 16 13 H 0.09 4.73 5.48 -2.91 -0.02 4.71 16 14 C 0.06 3.00 5.38 85.30 0.46 3.46 16 15 N -0.81 -40.73 13.93 21.85 0.30 -40.42 16 16 Si 0.96 41.32 24.67 68.60 1.69 43.01 16 17 H -0.25 -10.11 6.46 99.48 0.64 -9.47 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.27 -12.23 7.10 99.48 0.71 -11.52 16 20 C -0.29 -14.54 6.19 -19.96 -0.12 -14.67 16 21 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 22 H 0.08 3.13 5.70 -2.39 -0.01 3.11 16 23 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 30 H 0.08 2.10 8.07 -2.38 -0.02 2.08 16 31 H 0.10 4.89 4.68 -2.91 -0.01 4.87 16 32 H 0.30 13.47 8.29 -92.71 -0.77 12.70 16 Total: -1.00 -62.15 266.68 5.16 -56.99 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.07 Total: 16.60 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 4.15 Total: -41.43 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.75 Total: -75.18 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.69 Total: 43.01 kcal Total: -62.15 5.16 -56.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.338 kcal (2) G-P(sol) polarization free energy of solvation -62.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds