Wall clock time and date at job start Mon Mar 30 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47540 * 2 1 4 4 N 1.30089 * 124.97956 * 87.19008 * 3 2 1 5 5 C 1.35896 * 109.73472 * 179.97438 * 4 3 2 6 6 C 1.39687 * 133.50313 * 180.28793 * 5 4 3 7 7 C 1.37712 * 119.77497 * 180.20544 * 6 5 4 8 8 C 1.50697 * 119.73861 * 179.74008 * 7 6 5 9 9 C 1.38725 * 120.51866 * 359.48179 * 7 6 5 10 10 C 1.37960 * 120.43815 * 0.26154 * 9 7 6 11 11 C 1.38706 * 119.83015 * 0.02562 * 10 9 7 12 12 N 1.36537 * 124.98106 * 267.15688 * 3 2 1 13 13 C 1.37314 * 126.39677 * 0.06954 * 12 3 2 14 14 H 1.07997 * 120.00303 * 33.93168 * 13 12 3 15 15 C 1.38914 * 119.99770 * 213.93016 * 13 12 3 16 16 N 1.31380 * 119.99726 * 19.23009 * 15 13 12 17 17 Si 1.86802 * 119.99915 * 199.23109 * 15 13 12 18 18 H 1.48500 * 109.47161 * 59.99963 * 17 15 13 19 19 H 1.48505 * 109.46890 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46942 * 299.99932 * 17 15 13 21 21 H 1.08999 * 109.46880 * 300.00085 * 1 2 3 22 22 H 1.08999 * 109.47267 * 59.99774 * 1 2 3 23 23 H 1.08991 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47351 * 239.99950 * 2 1 3 25 25 H 1.08999 * 109.47267 * 120.00226 * 2 1 3 26 26 H 1.07995 * 120.10775 * 359.95508 * 6 5 4 27 27 H 1.08999 * 109.47535 * 269.73444 * 8 7 6 28 28 H 1.08995 * 109.47508 * 29.74081 * 8 7 6 29 29 H 1.09008 * 109.46814 * 149.74053 * 8 7 6 30 30 H 1.08005 * 119.78058 * 180.23781 * 9 7 6 31 31 H 1.08001 * 120.08233 * 179.97438 * 10 9 7 32 32 H 0.97004 * 119.99592 * 174.90370 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2318 2.1413 1.0646 5 6 2.6860 3.3714 0.7077 6 6 3.0556 4.5073 1.4318 7 6 3.4831 5.6340 0.7653 8 6 3.8762 6.8610 1.5470 9 6 3.5599 5.6466 -0.6197 10 6 3.2036 4.5314 -1.3496 11 6 2.7651 3.3897 -0.6953 12 7 2.3457 2.1403 -1.1173 13 6 2.2591 1.7058 -2.4170 14 1 1.4763 1.0203 -2.7063 15 6 3.1784 2.1481 -3.3599 16 7 4.3250 2.6577 -2.9706 17 14 2.7841 2.0184 -5.1812 18 1 1.5588 2.8025 -5.4795 19 1 3.9199 2.5555 -5.9730 20 1 2.5600 0.5946 -5.5390 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.0025 4.5032 2.5105 27 1 3.0033 7.4991 1.6849 28 1 4.2654 6.5625 2.5204 29 1 4.6442 7.4090 1.0011 30 1 3.9005 6.5355 -1.1301 31 1 3.2652 4.5477 -2.4278 32 1 4.9969 2.8981 -3.6277 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260033241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:33 Heat of formation + Delta-G solvation = 33.693955 kcal Electronic energy + Delta-G solvation = -15819.961673 eV Core-core repulsion = 13358.591982 eV Total energy + Delta-G solvation = -2461.369691 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.57336 -38.40791 -36.01991 -34.33695 -33.07515 -32.15229 -29.99195 -27.64328 -26.64085 -24.82529 -22.55542 -22.30571 -20.84317 -19.51888 -17.66504 -17.23822 -16.44355 -16.02508 -15.74419 -15.00409 -14.85469 -14.52785 -14.48312 -14.18745 -13.74859 -13.20619 -13.08558 -12.95378 -12.86956 -12.51994 -12.32408 -12.30788 -12.03646 -11.86907 -11.71397 -11.31349 -10.71043 -10.52783 -8.93800 -8.69555 -8.49075 -6.43953 0.36464 0.96721 1.34013 1.41131 1.48010 2.06666 2.22055 2.80215 2.88457 3.25398 3.56857 4.11018 4.25205 4.28939 4.43820 4.47082 4.61277 4.73617 4.87465 4.91706 4.98565 4.99982 5.07838 5.14996 5.16576 5.23502 5.32705 5.38223 5.47809 5.81436 5.91514 6.10784 6.24951 6.40609 6.76109 7.38776 7.55491 8.38101 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.012149 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.359862 B = 2304.143786 C = 3522.104865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.029 4.029 3 C 0.200 3.800 4 N -0.554 5.554 5 C -0.001 4.001 6 C -0.105 4.105 7 C -0.107 4.107 8 C -0.093 4.093 9 C -0.148 4.148 10 C -0.066 4.066 11 C 0.007 3.993 12 N -0.306 5.306 13 C -0.386 4.386 14 H 0.117 0.883 15 C 0.014 3.986 16 N -0.858 5.858 17 Si 1.001 2.999 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.252 1.252 21 H 0.049 0.951 22 H 0.040 0.960 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.102 0.898 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 1.930 0.632 3.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.068 4.068 3 C -0.062 4.062 4 N -0.278 5.278 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.109 4.109 8 C -0.149 4.149 9 C -0.169 4.169 10 C -0.086 4.086 11 C -0.108 4.108 12 N 0.023 4.977 13 C -0.514 4.514 14 H 0.135 0.865 15 C -0.195 4.195 16 N -0.488 5.488 17 Si 0.821 3.179 18 H -0.188 1.188 19 H -0.198 1.198 20 H -0.176 1.176 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.113 0.887 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.144 0.856 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.120 0.880 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.614 1.698 1.212 3.344 hybrid contribution 0.364 -0.005 -1.704 1.743 sum -2.249 1.693 -0.492 2.858 Atomic orbital electron populations 1.21608 0.92789 1.03192 1.01193 1.19972 0.97305 0.85836 1.03668 1.24187 1.03375 0.97223 0.81418 1.70124 1.25344 1.03729 1.28574 1.19469 1.06612 0.94854 0.91504 1.20071 1.03037 0.90596 0.98795 1.19822 1.01339 0.96168 0.93610 1.20655 1.01813 0.93318 0.99124 1.20891 1.04446 0.97731 0.93818 1.20143 0.98498 0.90960 0.99009 1.19176 1.08369 0.88655 0.94610 1.41442 1.42518 1.07325 1.06423 1.20046 1.16535 1.32624 0.82175 0.86511 1.26564 0.93163 0.93848 1.05940 1.70124 1.04683 1.36048 1.37952 0.84890 0.78486 0.80108 0.74392 1.18824 1.19778 1.17598 0.93161 0.94075 0.88716 0.90119 0.88799 0.85633 0.90357 0.91095 0.90602 0.84251 0.87990 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.89 71.98 0.71 -3.44 16 2 C -0.03 -1.11 6.24 29.85 0.19 -0.93 16 3 C 0.20 10.13 7.08 137.76 0.98 11.11 16 4 N -0.55 -29.43 11.27 -179.55 -2.02 -31.46 16 5 C 0.00 -0.07 7.23 39.43 0.28 0.22 16 6 C -0.11 -4.71 9.73 22.50 0.22 -4.49 16 7 C -0.11 -4.17 5.88 -19.87 -0.12 -4.28 16 8 C -0.09 -2.50 10.00 71.23 0.71 -1.79 16 9 C -0.15 -6.24 9.67 22.32 0.22 -6.02 16 10 C -0.07 -3.33 8.55 22.32 0.19 -3.14 16 11 C 0.01 0.36 6.15 38.78 0.24 0.60 16 12 N -0.31 -16.82 2.86 -333.13 -0.95 -17.77 16 13 C -0.39 -20.23 9.27 84.00 0.78 -19.45 16 14 H 0.12 5.64 7.90 -2.91 -0.02 5.61 16 15 C 0.01 0.70 4.57 84.92 0.39 1.09 16 16 N -0.86 -45.90 10.54 21.65 0.23 -45.67 16 17 Si 1.00 38.13 29.60 68.60 2.03 40.16 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 21 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.08 3.05 7.72 -2.39 -0.02 3.03 16 25 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 26 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 29 H 0.08 1.79 8.08 -2.38 -0.02 1.77 16 30 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.10 5.33 6.26 -2.91 -0.02 5.31 16 32 H 0.28 14.06 8.32 -92.71 -0.77 13.29 16 Total: -1.00 -66.43 273.03 5.18 -61.25 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.11 Total: 24.01 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.79 Total: -30.52 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -2.75 Total: -94.90 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -66.43 5.18 -61.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.948 kcal (2) G-P(sol) polarization free energy of solvation -66.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds