Wall clock time and date at job start Mon Mar 30 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.26999 * 125.11910 * 2 1 4 4 N 1.39343 * 114.48079 * 180.14994 * 3 2 1 5 5 C 1.38491 * 125.64670 * 179.80677 * 4 3 2 6 6 C 1.38889 * 120.30316 * 234.71231 * 5 4 3 7 7 C 1.38070 * 120.01952 * 179.97438 * 6 5 4 8 8 C 1.38961 * 120.64305 * 0.02562 * 7 6 5 9 9 C 1.36413 * 120.61658 * 359.69402 * 8 7 6 10 10 C 1.40750 * 119.95697 * 0.56411 * 9 8 7 11 11 C 1.40970 * 120.31544 * 179.74063 * 10 9 8 12 12 H 1.07994 * 120.00310 * 205.67463 * 11 10 9 13 13 C 1.39911 * 119.99708 * 25.66968 * 11 10 9 14 14 N 1.30885 * 119.99675 * 26.23492 * 13 11 10 15 15 Si 1.86794 * 119.99766 * 206.23238 * 13 11 10 16 16 H 1.48506 * 109.46819 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47412 * 299.99831 * 15 13 11 18 18 H 1.48495 * 109.47420 * 60.00668 * 15 13 11 19 19 C 1.47228 * 108.69733 * 359.53911 * 4 3 2 20 20 C 1.51210 * 125.12312 * 179.64507 * 2 1 3 21 21 H 1.08993 * 109.47360 * 270.34944 * 1 2 3 22 22 H 1.08999 * 109.46690 * 30.35227 * 1 2 3 23 23 H 1.09003 * 109.46662 * 150.34805 * 1 2 3 24 24 H 1.07999 * 119.99479 * 359.97438 * 6 5 4 25 25 H 1.07999 * 119.67836 * 179.97438 * 7 6 5 26 26 H 1.07996 * 119.68946 * 179.97438 * 8 7 6 27 27 H 1.08000 * 120.01705 * 180.27974 * 9 8 7 28 28 H 0.96997 * 120.00520 * 5.88866 * 14 13 11 29 29 H 1.09000 * 110.65940 * 118.68510 * 19 4 3 30 30 H 1.09006 * 110.66378 * 241.63501 * 19 4 3 31 31 H 1.09001 * 110.55449 * 61.45753 * 20 2 1 32 32 H 1.09002 * 110.55503 * 298.62511 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2376 1.0388 0.0000 4 7 3.6071 0.7816 -0.0033 5 6 4.6081 1.7386 -0.0078 6 6 5.5906 1.7205 -0.9893 7 6 6.5856 2.6778 -0.9885 8 6 6.6172 3.6656 -0.0116 9 6 5.6621 3.7114 0.9612 10 6 4.6392 2.7450 0.9880 11 6 3.6515 2.7819 1.9932 12 1 3.1389 1.8758 2.2802 13 6 3.3354 3.9927 2.6190 14 7 3.5273 5.1242 1.9898 15 14 2.6394 3.9941 4.3525 16 1 2.3915 5.3929 4.7851 17 1 1.3632 3.2352 4.3742 18 1 3.6108 3.3557 5.2765 19 6 3.8136 -0.6761 0.0053 20 6 2.3770 -1.2368 0.0077 21 1 -0.3634 0.0063 1.0276 22 1 -0.3633 0.8868 -0.5193 23 1 -0.3633 -0.8931 -0.5084 24 1 5.5765 0.9574 -1.7534 25 1 7.3471 2.6583 -1.7541 26 1 7.4027 4.4066 -0.0255 27 1 5.6935 4.4861 1.7131 28 1 3.8073 5.1214 1.0612 29 1 4.3489 -0.9940 -0.8894 30 1 4.3505 -0.9833 0.9028 31 1 2.1983 -1.8359 -0.8852 32 1 2.1973 -1.8255 0.9072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:06 Heat of formation + Delta-G solvation = 67.718981 kcal Electronic energy + Delta-G solvation = -15730.426550 eV Core-core repulsion = 13270.532294 eV Total energy + Delta-G solvation = -2459.894256 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25552 -37.44071 -33.87467 -32.67358 -30.21026 -29.25979 -29.17310 -26.58313 -24.79444 -22.51176 -20.94607 -20.26022 -18.52307 -17.79346 -16.21454 -15.47385 -14.70081 -14.25152 -14.01544 -13.68628 -13.33594 -12.94039 -12.48044 -12.29553 -12.22437 -11.89932 -11.59088 -11.30376 -11.21056 -10.93173 -10.74013 -10.62734 -10.38189 -9.87635 -9.46550 -9.38617 -8.95024 -7.94834 -7.60557 -7.22430 -6.54063 -4.30889 2.63286 2.80193 3.10880 3.17597 3.30349 3.37767 3.70876 4.05228 4.58510 4.94027 5.03939 5.34166 5.39070 5.60510 5.82198 5.89474 5.93223 6.06130 6.10423 6.20545 6.25633 6.40075 6.48686 6.90361 7.04070 7.09370 7.30350 7.54254 7.77834 7.83914 7.95510 8.15942 8.24677 8.51373 8.88397 8.91619 9.15003 10.08770 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.012786 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.897456 B = 2189.309176 C = 3453.772385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.016 4.016 3 N -0.184 5.184 4 N -0.460 5.460 5 C 0.057 3.943 6 C -0.088 4.088 7 C -0.249 4.249 8 C -0.089 4.089 9 C -0.209 4.209 10 C 0.093 3.907 11 C -0.484 4.484 12 H 0.074 0.926 13 C 0.038 3.962 14 N -0.792 5.792 15 Si 1.062 2.938 16 H -0.273 1.273 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.091 3.909 20 C -0.120 4.120 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.300 0.700 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -8.367 -1.178 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.211 4.211 3 N 0.011 4.989 4 N -0.267 5.267 5 C -0.036 4.036 6 C -0.109 4.109 7 C -0.269 4.269 8 C -0.107 4.107 9 C -0.229 4.229 10 C 0.088 3.912 11 C -0.512 4.512 12 H 0.092 0.908 13 C -0.184 4.184 14 N -0.415 5.415 15 Si 0.886 3.114 16 H -0.198 1.198 17 H -0.202 1.202 18 H -0.201 1.201 19 C -0.033 4.033 20 C -0.160 4.160 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.395 -6.250 0.032 7.113 hybrid contribution 0.795 -1.988 -1.320 2.515 sum -2.600 -8.239 -1.288 8.735 Atomic orbital electron populations 1.20012 0.87162 1.02369 1.02280 1.24562 0.96496 0.90731 1.09265 1.73797 0.91966 1.27585 1.05569 1.46962 0.98264 1.01690 1.79741 1.16782 0.91662 0.97646 0.97486 1.20525 0.96605 0.98302 0.95514 1.20059 1.02796 1.00498 1.03549 1.20356 0.97660 0.97132 0.95598 1.20789 0.97050 1.03487 1.01578 1.17741 0.92398 0.91520 0.89530 1.20305 1.17766 0.97275 1.15812 0.90831 1.26989 0.94192 0.91545 1.05646 1.70453 1.28131 1.29033 1.13905 0.83678 0.77097 0.77108 0.73490 1.19813 1.20168 1.20134 1.22422 0.96437 0.83575 1.00878 1.22077 0.93129 0.98181 1.02619 0.91337 0.91216 0.91450 0.89367 0.89089 0.89205 0.87537 0.88677 0.92285 0.92047 0.90225 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.48 36.01 0.38 -0.43 16 2 C -0.02 -0.28 7.43 -79.07 -0.59 -0.87 16 3 N -0.18 -4.25 10.79 34.82 0.38 -3.87 16 4 N -0.46 -10.76 3.37 -57.07 -0.19 -10.95 16 5 C 0.06 1.46 6.21 -83.33 -0.52 0.95 16 6 C -0.09 -2.07 9.80 -39.40 -0.39 -2.45 16 7 C -0.25 -5.67 10.03 -39.38 -0.40 -6.06 16 8 C -0.09 -2.09 9.96 -39.97 -0.40 -2.49 16 9 C -0.21 -5.46 7.92 -39.29 -0.31 -5.77 16 10 C 0.09 2.55 5.30 -106.63 -0.57 1.99 16 11 C -0.48 -13.33 8.03 -37.92 -0.30 -13.63 16 12 H 0.07 2.08 7.32 -52.49 -0.38 1.69 16 13 C 0.04 1.01 4.91 -17.33 -0.09 0.92 16 14 N -0.79 -21.60 12.33 55.55 0.68 -20.91 16 15 Si 1.06 22.48 30.00 -169.99 -5.10 17.38 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 C 0.09 1.69 7.58 -3.01 -0.02 1.67 16 20 C -0.12 -1.84 6.97 -27.00 -0.19 -2.03 16 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 25 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 27 H 0.11 2.84 6.54 -52.49 -0.34 2.50 16 28 H 0.30 8.45 6.77 -40.82 -0.28 8.18 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 274.25 15.07 4.13 4.13 Total: -1.00 -30.19 274.25 -7.51 -37.70 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.03 Total: 4.73 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -3.38 Total: -28.21 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.87 Total: -35.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.10 Total: 17.38 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.19 -7.51 -37.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.417 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds