Wall clock time and date at job start Mon Mar 30 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.26999 * 125.11910 * 2 1 4 4 N 1.39343 * 114.48079 * 180.14994 * 3 2 1 5 5 C 1.38491 * 125.64670 * 179.80677 * 4 3 2 6 6 C 1.38889 * 120.30316 * 234.71231 * 5 4 3 7 7 C 1.38070 * 120.01952 * 179.97438 * 6 5 4 8 8 C 1.38961 * 120.64305 * 0.02562 * 7 6 5 9 9 C 1.36413 * 120.61658 * 359.69402 * 8 7 6 10 10 C 1.40750 * 119.95697 * 0.56411 * 9 8 7 11 11 C 1.40970 * 120.31544 * 179.74063 * 10 9 8 12 12 H 1.07994 * 120.00310 * 205.67463 * 11 10 9 13 13 C 1.39911 * 119.99708 * 25.66968 * 11 10 9 14 14 N 1.30885 * 119.99675 * 26.23492 * 13 11 10 15 15 Si 1.86794 * 119.99766 * 206.23238 * 13 11 10 16 16 H 1.48506 * 109.46819 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47412 * 299.99831 * 15 13 11 18 18 H 1.48495 * 109.47420 * 60.00668 * 15 13 11 19 19 C 1.47228 * 108.69733 * 359.53911 * 4 3 2 20 20 C 1.51210 * 125.12312 * 179.64507 * 2 1 3 21 21 H 1.08993 * 109.47360 * 270.34944 * 1 2 3 22 22 H 1.08999 * 109.46690 * 30.35227 * 1 2 3 23 23 H 1.09003 * 109.46662 * 150.34805 * 1 2 3 24 24 H 1.07999 * 119.99479 * 359.97438 * 6 5 4 25 25 H 1.07999 * 119.67836 * 179.97438 * 7 6 5 26 26 H 1.07996 * 119.68946 * 179.97438 * 8 7 6 27 27 H 1.08000 * 120.01705 * 180.27974 * 9 8 7 28 28 H 0.96997 * 120.00520 * 5.88866 * 14 13 11 29 29 H 1.09000 * 110.65940 * 118.68510 * 19 4 3 30 30 H 1.09006 * 110.66378 * 241.63501 * 19 4 3 31 31 H 1.09001 * 110.55449 * 61.45753 * 20 2 1 32 32 H 1.09002 * 110.55503 * 298.62511 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2376 1.0388 0.0000 4 7 3.6071 0.7816 -0.0033 5 6 4.6081 1.7386 -0.0078 6 6 5.5906 1.7205 -0.9893 7 6 6.5856 2.6778 -0.9885 8 6 6.6172 3.6656 -0.0116 9 6 5.6621 3.7114 0.9612 10 6 4.6392 2.7450 0.9880 11 6 3.6515 2.7819 1.9932 12 1 3.1389 1.8758 2.2802 13 6 3.3354 3.9927 2.6190 14 7 3.5273 5.1242 1.9898 15 14 2.6394 3.9941 4.3525 16 1 2.3915 5.3929 4.7851 17 1 1.3632 3.2352 4.3742 18 1 3.6108 3.3557 5.2765 19 6 3.8136 -0.6761 0.0053 20 6 2.3770 -1.2368 0.0077 21 1 -0.3634 0.0063 1.0276 22 1 -0.3633 0.8868 -0.5193 23 1 -0.3633 -0.8931 -0.5084 24 1 5.5765 0.9574 -1.7534 25 1 7.3471 2.6583 -1.7541 26 1 7.4027 4.4066 -0.0255 27 1 5.6935 4.4861 1.7131 28 1 3.8073 5.1214 1.0612 29 1 4.3489 -0.9940 -0.8894 30 1 4.3505 -0.9833 0.9028 31 1 2.1983 -1.8359 -0.8852 32 1 2.1973 -1.8255 0.9072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:06 Heat of formation + Delta-G solvation = 50.618111 kcal Electronic energy + Delta-G solvation = -15731.168099 eV Core-core repulsion = 13270.532294 eV Total energy + Delta-G solvation = -2460.635805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.81493 -39.24984 -35.79915 -34.26133 -31.71135 -31.10613 -30.71060 -28.16094 -26.65783 -24.03275 -22.83397 -21.96872 -20.13124 -19.60131 -17.90074 -16.94907 -16.55927 -15.93131 -15.63314 -15.31258 -15.02672 -14.19481 -14.14559 -13.94634 -13.79957 -13.51389 -13.15365 -12.77186 -12.61712 -12.56180 -12.40786 -12.27187 -12.01038 -11.71516 -11.33804 -10.89764 -10.81523 -9.75361 -9.55305 -9.23241 -8.23749 -6.32370 0.79347 0.89808 1.43890 1.58745 1.64986 1.73480 2.17136 2.30260 2.66641 3.43046 3.68376 3.74597 4.10149 4.20845 4.31586 4.41566 4.54088 4.70327 4.77386 4.84423 4.95434 4.97012 5.00747 5.12441 5.25815 5.36387 5.55450 5.69383 5.79173 5.96040 5.98678 6.21509 6.35313 6.65062 6.91635 7.17552 7.53185 8.04101 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.012786 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.897456 B = 2189.309176 C = 3453.772385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.012 3.988 3 N -0.262 5.262 4 N -0.486 5.486 5 C 0.054 3.946 6 C -0.102 4.102 7 C -0.233 4.233 8 C -0.096 4.096 9 C -0.228 4.228 10 C 0.059 3.941 11 C -0.512 4.512 12 H 0.055 0.945 13 C 0.002 3.998 14 N -0.816 5.816 15 Si 1.112 2.888 16 H -0.267 1.267 17 H -0.264 1.264 18 H -0.265 1.265 19 C 0.084 3.916 20 C -0.113 4.113 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.281 0.719 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 -10.516 -1.782 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.184 4.184 3 N -0.066 5.066 4 N -0.293 5.293 5 C -0.040 4.040 6 C -0.123 4.123 7 C -0.253 4.253 8 C -0.115 4.115 9 C -0.248 4.248 10 C 0.054 3.946 11 C -0.540 4.540 12 H 0.073 0.927 13 C -0.214 4.214 14 N -0.439 5.439 15 Si 0.929 3.071 16 H -0.191 1.191 17 H -0.188 1.188 18 H -0.189 1.189 19 C -0.040 4.040 20 C -0.153 4.153 21 H 0.099 0.901 22 H 0.080 0.920 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.146 0.854 26 H 0.136 0.864 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.970 -8.421 -0.591 9.329 hybrid contribution 0.968 -1.510 -1.313 2.223 sum -3.001 -9.931 -1.904 10.548 Atomic orbital electron populations 1.20262 0.84050 1.04136 1.03563 1.25608 0.98328 0.91007 1.03410 1.73809 0.92248 1.30341 1.10186 1.47051 0.98300 1.02803 1.81156 1.17150 0.92463 0.97486 0.96935 1.20862 0.96475 0.99313 0.95664 1.20537 1.02629 0.98916 1.03193 1.20675 0.97687 0.98088 0.95063 1.20793 0.98106 1.03454 1.02478 1.18153 0.92980 0.93032 0.90432 1.20244 1.19034 0.97001 1.17717 0.92663 1.28334 0.93562 0.90830 1.08656 1.70575 1.30864 1.29476 1.12989 0.83081 0.77137 0.77589 0.69254 1.19118 1.18834 1.18931 1.22648 0.98830 0.81357 1.01153 1.22199 0.90156 0.97360 1.05571 0.90108 0.91981 0.87194 0.86969 0.85426 0.86408 0.89278 0.90725 0.90918 0.92839 0.86494 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.47 10.48 71.24 0.75 -0.73 16 2 C 0.01 0.41 7.43 46.84 0.35 0.76 16 3 N -0.26 -12.14 10.79 -41.35 -0.45 -12.59 16 4 N -0.49 -22.87 3.37 -334.47 -1.13 -24.00 16 5 C 0.05 2.80 6.21 39.08 0.24 3.04 16 6 C -0.10 -4.69 9.80 22.39 0.22 -4.47 16 7 C -0.23 -10.20 10.03 22.40 0.22 -9.97 16 8 C -0.10 -4.51 9.96 22.02 0.22 -4.30 16 9 C -0.23 -12.36 7.92 22.46 0.18 -12.18 16 10 C 0.06 3.35 5.30 -21.16 -0.11 3.24 16 11 C -0.51 -29.53 8.03 23.34 0.19 -29.34 16 12 H 0.06 3.28 7.32 -2.91 -0.02 3.26 16 13 C 0.00 0.10 4.91 85.24 0.42 0.52 16 14 N -0.82 -46.64 12.33 21.82 0.27 -46.37 16 15 Si 1.11 46.43 30.00 68.60 2.06 48.49 16 16 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 17 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 19 C 0.08 2.98 7.58 86.65 0.66 3.63 16 20 C -0.11 -3.08 6.97 30.42 0.21 -2.87 16 21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 25 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 27 H 0.09 5.02 6.54 -2.91 -0.02 5.01 16 28 H 0.28 16.85 6.77 -92.71 -0.63 16.22 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -69.68 274.25 5.54 -64.13 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.25 Total: 22.99 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 3.54 Total: -52.67 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.30 Total: -82.95 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.06 Total: 48.49 kcal Total: -69.68 5.54 -64.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.752 kcal (2) G-P(sol) polarization free energy of solvation -69.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds