Wall clock time and date at job start Mon Mar 30 2020 03:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.30244 * 126.11152 * 2 1 4 4 N 1.39872 * 110.08931 * 179.97438 * 3 2 1 5 5 H 0.96997 * 125.46276 * 179.97438 * 4 3 2 6 6 C 1.37034 * 109.07791 * 0.02562 * 4 3 2 7 7 C 1.39282 * 133.85498 * 180.29327 * 6 4 3 8 8 C 1.36594 * 119.85416 * 180.20565 * 7 6 4 9 9 C 1.50701 * 119.59138 * 179.73241 * 8 7 6 10 10 H 1.08998 * 109.47477 * 359.72846 * 9 8 7 11 11 C 1.53001 * 109.47098 * 119.72994 * 9 8 7 12 12 C 1.50694 * 109.47169 * 239.72696 * 9 8 7 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.38963 * 120.81543 * 359.45426 * 8 7 6 21 21 C 1.36457 * 120.62775 * 0.27817 * 20 8 7 22 22 C 1.39954 * 119.63615 * 359.97438 * 21 20 8 23 23 H 1.09011 * 109.47304 * 269.99492 * 1 2 3 24 24 H 1.08997 * 109.47361 * 29.99058 * 1 2 3 25 25 H 1.08998 * 109.47489 * 149.99425 * 1 2 3 26 26 H 1.08001 * 120.07894 * 359.95737 * 7 6 4 27 27 H 1.09000 * 109.47809 * 59.99661 * 11 9 8 28 28 H 1.09000 * 109.47703 * 180.02562 * 11 9 8 29 29 H 1.09007 * 109.47140 * 300.00103 * 11 9 8 30 30 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 31 31 H 1.07997 * 119.68988 * 180.25215 * 20 8 7 32 32 H 1.08001 * 120.18845 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6661 0.0006 5 1 4.3778 1.2702 0.0003 6 6 3.6919 -0.7023 0.0004 7 6 4.7463 -1.6123 0.0059 8 6 4.4870 -2.9534 -0.0004 9 6 5.6323 -3.9329 -0.0005 10 1 6.5764 -3.3880 0.0000 11 6 5.5508 -4.8131 1.2483 12 6 5.5527 -4.7987 -1.2313 13 1 4.7525 -4.6545 -1.9422 14 6 6.5008 -5.7757 -1.4495 15 7 7.4749 -5.9516 -0.5836 16 14 6.4017 -6.8495 -2.9748 17 1 5.5870 -8.0553 -2.6793 18 1 5.7698 -6.0836 -4.0790 19 1 7.7696 -7.2630 -3.3787 20 6 3.1801 -3.4258 -0.0009 21 6 2.1272 -2.5578 -0.0008 22 6 2.3669 -1.1790 0.0003 23 1 -0.3634 -0.0001 1.0278 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 5.7667 -1.2586 0.0111 27 1 4.6068 -5.3580 1.2479 28 1 6.3794 -5.5212 1.2486 29 1 5.6083 -4.1868 2.1387 30 1 8.1417 -6.6393 -0.7369 31 1 2.9959 -4.4899 -0.0018 32 1 1.1143 -2.9327 -0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:28 Heat of formation + Delta-G solvation = 65.540440 kcal Electronic energy + Delta-G solvation = -15289.350772 eV Core-core repulsion = 12829.362047 eV Total energy + Delta-G solvation = -2459.988724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81440 -37.32780 -33.88563 -33.01040 -31.11948 -29.55312 -27.90755 -27.43322 -25.15518 -22.57930 -22.16316 -19.81374 -19.52893 -17.26199 -16.44563 -15.67104 -14.89554 -14.70837 -14.34383 -13.76808 -13.33996 -12.95615 -12.86464 -12.65383 -12.21010 -11.89336 -11.58488 -11.23372 -10.95695 -10.70698 -10.63567 -10.37738 -10.28413 -10.11478 -9.63830 -9.51490 -9.02199 -8.40886 -7.77537 -7.46683 -6.04537 -4.11415 1.50289 2.13481 2.84327 3.03924 3.28335 3.35365 3.39339 4.35331 4.49360 4.77311 4.90763 5.16084 5.27044 5.58798 5.68897 5.75467 5.77438 5.88870 6.02079 6.18601 6.50016 6.56437 6.80765 6.85338 6.94331 7.13751 7.16227 7.31380 7.48062 7.67130 7.74443 7.92095 7.95699 8.05796 8.34598 8.91202 9.53418 11.01174 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041115 B = 0.006299 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.847273 B = 4443.986740 C = 4605.232825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.095 3.905 3 N -0.272 5.272 4 N -0.519 5.519 5 H 0.435 0.565 6 C 0.133 3.867 7 C -0.165 4.165 8 C 0.022 3.978 9 C 0.069 3.931 10 H 0.036 0.964 11 C -0.132 4.132 12 C -0.508 4.508 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.287 1.287 20 C -0.136 4.136 21 C -0.056 4.056 22 C -0.198 4.198 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.030 0.970 28 H 0.086 0.914 29 H 0.009 0.991 30 H 0.261 0.739 31 H 0.128 0.872 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 7.709 2.014 12.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.082 4.082 3 N -0.087 5.087 4 N -0.234 5.234 5 H 0.278 0.722 6 C 0.019 3.981 7 C -0.187 4.187 8 C 0.020 3.980 9 C 0.050 3.950 10 H 0.054 0.946 11 C -0.190 4.190 12 C -0.546 4.546 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.155 4.155 21 C -0.077 4.077 22 C -0.206 4.206 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.137 0.863 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.256 8.886 2.040 12.992 hybrid contribution 0.608 -1.089 -0.866 1.518 sum -8.649 7.797 1.175 11.704 Atomic orbital electron populations 1.20166 0.86347 1.03374 1.02996 1.23407 0.96280 0.89251 0.99293 1.76341 0.87695 1.23570 1.21142 1.45713 1.05168 1.03780 1.68700 0.72188 1.18876 0.95865 0.84338 0.99039 1.19784 0.96336 0.91777 1.10839 1.20295 0.96529 0.93196 0.88026 1.17976 0.90336 0.91486 0.95194 0.94604 1.21784 1.02055 1.00175 0.94959 1.21077 1.11312 1.16506 1.05687 0.92292 1.24952 0.95181 0.97212 0.96549 1.69885 1.14128 1.33473 1.35341 0.86567 0.77283 0.80734 0.83306 1.20588 1.19882 1.21233 1.20702 0.91802 1.00018 1.02979 1.20257 0.98950 0.90254 0.98198 1.19617 0.91489 0.94082 1.15380 0.90373 0.90831 0.90208 0.86323 0.95038 0.89519 0.97193 0.92905 0.85393 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.48 36.00 0.38 -0.36 16 2 C 0.10 1.47 7.43 -80.19 -0.60 0.88 16 3 N -0.27 -4.45 12.55 34.84 0.44 -4.02 16 4 N -0.52 -8.36 7.37 32.36 0.24 -8.12 16 5 H 0.43 5.62 8.96 -182.77 -1.64 3.98 16 6 C 0.13 2.44 7.34 -84.18 -0.62 1.82 16 7 C -0.17 -3.23 9.63 -39.79 -0.38 -3.61 16 8 C 0.02 0.47 4.71 -104.95 -0.49 -0.02 16 9 C 0.07 1.66 2.46 -92.93 -0.23 1.43 16 10 H 0.04 0.93 7.83 -51.93 -0.41 0.53 16 11 C -0.13 -3.08 8.78 37.16 0.33 -2.76 16 12 C -0.51 -13.45 8.22 -34.44 -0.28 -13.73 16 13 H 0.06 1.56 7.59 -52.49 -0.40 1.17 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.14 -2.63 8.60 -39.95 -0.34 -2.97 16 21 C -0.06 -0.95 10.07 -39.58 -0.40 -1.35 16 22 C -0.20 -3.49 6.33 -105.20 -0.67 -4.15 16 23 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.12 2.17 7.90 -52.49 -0.41 1.76 16 27 H 0.03 0.69 7.35 -51.93 -0.38 0.31 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.13 2.45 7.53 -52.49 -0.40 2.05 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 273.62 15.07 4.12 4.12 Total: -1.00 -29.48 273.62 -8.20 -37.67 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.20 Total: 1.83 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -3.40 Total: -23.25 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 1.30 Total: -36.18 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.48 -8.20 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.214 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds