Wall clock time and date at job start Mon Mar 30 2020 03:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.30244 * 126.11152 * 2 1 4 4 N 1.39872 * 110.08931 * 179.97438 * 3 2 1 5 5 H 0.96997 * 125.46276 * 179.97438 * 4 3 2 6 6 C 1.37034 * 109.07791 * 0.02562 * 4 3 2 7 7 C 1.39282 * 133.85498 * 180.29327 * 6 4 3 8 8 C 1.36594 * 119.85416 * 180.20565 * 7 6 4 9 9 C 1.50701 * 119.59138 * 179.73241 * 8 7 6 10 10 H 1.08998 * 109.47477 * 359.72846 * 9 8 7 11 11 C 1.53001 * 109.47098 * 119.72994 * 9 8 7 12 12 C 1.50694 * 109.47169 * 239.72696 * 9 8 7 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.38963 * 120.81543 * 359.45426 * 8 7 6 21 21 C 1.36457 * 120.62775 * 0.27817 * 20 8 7 22 22 C 1.39954 * 119.63615 * 359.97438 * 21 20 8 23 23 H 1.09011 * 109.47304 * 269.99492 * 1 2 3 24 24 H 1.08997 * 109.47361 * 29.99058 * 1 2 3 25 25 H 1.08998 * 109.47489 * 149.99425 * 1 2 3 26 26 H 1.08001 * 120.07894 * 359.95737 * 7 6 4 27 27 H 1.09000 * 109.47809 * 59.99661 * 11 9 8 28 28 H 1.09000 * 109.47703 * 180.02562 * 11 9 8 29 29 H 1.09007 * 109.47140 * 300.00103 * 11 9 8 30 30 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 31 31 H 1.07997 * 119.68988 * 180.25215 * 20 8 7 32 32 H 1.08001 * 120.18845 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6661 0.0006 5 1 4.3778 1.2702 0.0003 6 6 3.6919 -0.7023 0.0004 7 6 4.7463 -1.6123 0.0059 8 6 4.4870 -2.9534 -0.0004 9 6 5.6323 -3.9329 -0.0005 10 1 6.5764 -3.3880 0.0000 11 6 5.5508 -4.8131 1.2483 12 6 5.5527 -4.7987 -1.2313 13 1 4.7525 -4.6545 -1.9422 14 6 6.5008 -5.7757 -1.4495 15 7 7.4749 -5.9516 -0.5836 16 14 6.4017 -6.8495 -2.9748 17 1 5.5870 -8.0553 -2.6793 18 1 5.7698 -6.0836 -4.0790 19 1 7.7696 -7.2630 -3.3787 20 6 3.1801 -3.4258 -0.0009 21 6 2.1272 -2.5578 -0.0008 22 6 2.3669 -1.1790 0.0003 23 1 -0.3634 -0.0001 1.0278 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 5.7667 -1.2586 0.0111 27 1 4.6068 -5.3580 1.2479 28 1 6.3794 -5.5212 1.2486 29 1 5.6083 -4.1868 2.1387 30 1 8.1417 -6.6393 -0.7369 31 1 2.9959 -4.4899 -0.0018 32 1 1.1143 -2.9327 -0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:27 Heat of formation + Delta-G solvation = 48.806353 kcal Electronic energy + Delta-G solvation = -15290.076416 eV Core-core repulsion = 12829.362047 eV Total energy + Delta-G solvation = -2460.714369 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.14137 -38.84357 -35.70973 -34.21278 -32.94389 -30.88027 -29.47285 -28.51905 -27.18754 -24.22468 -23.59269 -21.40539 -20.79420 -18.75367 -18.13356 -17.32708 -16.66045 -16.00894 -15.94657 -15.13459 -14.71913 -14.58997 -14.02641 -13.81005 -13.60045 -13.33321 -13.13803 -13.03280 -12.80621 -12.37856 -12.23200 -12.09825 -11.95596 -11.62998 -11.30467 -11.00967 -10.86674 -10.45330 -9.29090 -8.82221 -8.08432 -6.22113 0.12489 0.68818 1.43741 1.44887 1.54040 1.57128 1.81506 2.44911 2.98256 3.20174 3.63412 3.69692 3.86837 4.24500 4.49206 4.55267 4.69783 4.82057 4.87507 4.91165 4.95689 5.09126 5.17543 5.23161 5.30516 5.52920 5.58478 5.62308 5.72325 6.02727 6.09263 6.14409 6.34982 6.45333 6.70874 6.86236 7.45743 8.96227 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041115 B = 0.006299 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.847273 B = 4443.986740 C = 4605.232825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.103 3.897 3 N -0.285 5.285 4 N -0.516 5.516 5 H 0.445 0.555 6 C 0.122 3.878 7 C -0.175 4.175 8 C 0.001 3.999 9 C 0.069 3.931 10 H 0.005 0.995 11 C -0.121 4.121 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.272 1.272 19 H -0.285 1.285 20 C -0.155 4.155 21 C -0.036 4.036 22 C -0.211 4.211 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.125 0.875 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 8.234 1.606 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 N -0.100 5.100 4 N -0.232 5.232 5 H 0.291 0.709 6 C 0.007 3.993 7 C -0.197 4.197 8 C -0.002 4.002 9 C 0.051 3.949 10 H 0.023 0.977 11 C -0.179 4.179 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.183 4.183 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.211 1.211 20 C -0.174 4.174 21 C -0.056 4.056 22 C -0.219 4.219 23 H 0.116 0.884 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.738 9.435 1.635 15.148 hybrid contribution 1.328 -1.140 -0.712 1.889 sum -10.410 8.295 0.923 13.343 Atomic orbital electron populations 1.20416 0.82710 1.05040 1.04763 1.24163 0.98325 0.87710 0.97292 1.76367 0.87621 1.24135 1.21883 1.45794 1.05849 1.03191 1.68390 0.70944 1.18909 0.96065 0.85247 0.99075 1.19735 0.96922 0.91700 1.11355 1.20051 0.96417 0.93162 0.90550 1.17821 0.90413 0.91827 0.94888 0.97714 1.21619 1.01211 0.99716 0.95370 1.21340 1.11099 1.16895 1.06411 0.92778 1.25695 0.94930 0.98495 0.99222 1.70014 1.14722 1.34061 1.36852 0.85610 0.77253 0.79188 0.79954 1.19722 1.19653 1.21078 1.20688 0.91638 1.00379 1.04724 1.20568 1.00101 0.89616 0.95330 1.20035 0.91700 0.95080 1.15048 0.88375 0.89451 0.88313 0.86457 0.94302 0.92118 0.95785 0.92918 0.85667 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.48 71.23 0.75 -0.43 16 2 C 0.10 2.85 7.43 44.78 0.33 3.18 16 3 N -0.28 -8.66 12.55 -43.70 -0.55 -9.20 16 4 N -0.52 -15.99 7.37 -51.54 -0.38 -16.37 16 5 H 0.44 11.16 8.96 -213.47 -1.91 9.24 16 6 C 0.12 4.37 7.34 39.21 0.29 4.66 16 7 C -0.17 -6.93 9.63 22.14 0.21 -6.72 16 8 C 0.00 0.04 4.71 -20.07 -0.09 -0.06 16 9 C 0.07 3.46 2.46 -12.29 -0.03 3.43 16 10 H 0.00 0.26 7.83 -2.39 -0.02 0.24 16 11 C -0.12 -5.80 8.78 71.98 0.63 -5.17 16 12 C -0.52 -28.05 8.22 25.60 0.21 -27.84 16 13 H 0.05 2.91 7.59 -2.91 -0.02 2.88 16 14 C 0.02 0.83 5.30 84.66 0.45 1.28 16 15 N -0.92 -52.03 11.32 21.45 0.24 -51.79 16 16 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 20 C -0.15 -5.86 8.60 22.03 0.19 -5.67 16 21 C -0.04 -1.13 10.07 22.27 0.22 -0.91 16 22 C -0.21 -6.91 6.33 -20.24 -0.13 -7.04 16 23 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.12 4.49 7.90 -2.91 -0.02 4.47 16 27 H 0.04 1.74 7.35 -2.39 -0.02 1.72 16 28 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 29 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 31 H 0.13 4.72 7.53 -2.91 -0.02 4.70 16 32 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -63.49 273.62 3.59 -59.90 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.78 Total: 13.78 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 3.03 Total: -41.30 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -0.69 Total: -77.36 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -63.49 3.59 -59.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.706 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds