Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38342 * 119.86151 * 2 1 4 4 C 1.37975 * 120.13391 * 180.02562 * 3 2 1 5 5 C 1.39490 * 119.86612 * 359.97438 * 4 3 2 6 6 C 1.48030 * 120.14123 * 179.97438 * 5 4 3 7 7 N 1.29302 * 122.91328 * 330.51572 * 6 5 4 8 8 C 1.46930 * 110.13416 * 179.97438 * 7 6 5 9 9 C 1.54153 * 104.07724 * 0.02562 * 8 7 6 10 10 N 1.37196 * 122.91267 * 150.48493 * 6 5 4 11 11 C 1.36884 * 125.84424 * 0.02562 * 10 6 5 12 12 H 1.08001 * 119.99916 * 342.94315 * 11 10 6 13 13 C 1.38931 * 120.00144 * 162.93282 * 11 10 6 14 14 N 1.31457 * 120.00276 * 4.99043 * 13 11 10 15 15 Si 1.86805 * 120.00022 * 184.98389 * 13 11 10 16 16 H 1.48498 * 109.47090 * 90.00552 * 15 13 11 17 17 H 1.48504 * 109.47056 * 210.00384 * 15 13 11 18 18 H 1.48506 * 109.47034 * 330.00335 * 15 13 11 19 19 C 1.39492 * 119.72387 * 0.27292 * 5 4 3 20 20 C 1.37983 * 119.86160 * 359.46670 * 19 5 4 21 21 H 1.09001 * 109.47028 * 89.99854 * 1 2 3 22 22 H 1.08997 * 109.47109 * 210.00170 * 1 2 3 23 23 H 1.09003 * 109.46679 * 329.99674 * 1 2 3 24 24 H 1.07996 * 119.93685 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.07077 * 179.97438 * 4 3 2 26 26 H 1.09001 * 110.50808 * 118.64711 * 8 7 6 27 27 H 1.08993 * 110.51198 * 241.34703 * 8 7 6 28 28 H 1.09000 * 110.65366 * 241.54284 * 9 8 7 29 29 H 1.08996 * 110.65695 * 118.45030 * 9 8 7 30 30 H 0.97001 * 120.00686 * 174.99780 * 14 13 11 31 31 H 1.08006 * 120.06810 * 179.72626 * 19 5 4 32 32 H 1.07994 * 119.93075 * 180.25230 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5756 1.2063 -0.0005 5 6 4.2760 0.0000 -0.0005 6 6 5.7563 -0.0001 -0.0017 7 7 6.4585 0.9445 -0.5369 8 6 7.8915 0.6619 -0.3774 9 6 7.9270 -0.6794 0.3815 10 7 6.5022 -1.0022 0.5656 11 6 6.0066 -2.1124 1.1946 12 1 4.9777 -2.1333 1.5222 13 6 6.8272 -3.2123 1.4115 14 7 8.1034 -3.1515 1.1021 15 14 6.1171 -4.7776 2.1429 16 1 5.6393 -5.6623 1.0500 17 1 7.1668 -5.4793 2.9246 18 1 4.9806 -4.4357 3.0356 19 6 3.5757 -1.2064 -0.0058 20 6 2.1959 -1.1998 0.0002 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6526 2.1331 0.0004 25 1 4.1124 2.1435 -0.0010 26 1 8.3718 0.5623 -1.3508 27 1 8.3724 1.4453 0.2083 28 1 8.4219 -0.5627 1.3456 29 1 8.4214 -1.4459 -0.2153 30 1 8.6911 -3.8918 1.3198 31 1 4.1123 -2.1437 -0.0103 32 1 1.6526 -2.1331 0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260093823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = 60.271707 kcal Electronic energy + Delta-G solvation = -15570.445010 eV Core-core repulsion = 13110.227816 eV Total energy + Delta-G solvation = -2460.217194 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.30833 -37.98268 -33.44561 -32.66255 -30.71887 -29.97181 -28.76317 -25.92539 -24.93588 -22.25949 -21.26668 -20.80239 -18.72248 -17.77507 -15.64102 -14.93790 -14.84974 -14.45241 -14.29989 -13.81783 -13.50239 -12.94824 -12.72968 -12.25093 -12.04533 -11.74967 -11.70142 -11.45846 -11.37876 -10.92224 -10.75689 -10.54446 -10.44159 -10.24225 -9.95013 -8.97649 -8.41577 -8.39276 -7.97697 -7.01168 -6.35631 -3.79691 1.62060 1.95246 3.07799 3.16277 3.18690 3.67629 4.02963 4.45439 4.85153 5.06028 5.19558 5.25956 5.48951 5.54678 5.71378 5.73971 5.95918 6.02328 6.07192 6.21465 6.37725 6.45978 6.55504 6.61001 6.75680 6.96310 7.03198 7.18826 7.28102 7.32432 7.47582 7.59928 7.63781 8.37127 8.97143 9.49958 9.80099 10.66937 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022376 B = 0.010019 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.039074 B = 2793.908358 C = 3965.153303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.079 4.079 5 C -0.016 4.016 6 C 0.362 3.638 7 N -0.645 5.645 8 C 0.027 3.973 9 C 0.109 3.891 10 N -0.459 5.459 11 C -0.303 4.303 12 H 0.105 0.895 13 C 0.029 3.971 14 N -0.880 5.880 15 Si 0.924 3.076 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.093 4.093 20 C -0.131 4.131 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.269 0.731 31 H 0.147 0.853 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 2.387 -0.567 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.099 4.099 5 C -0.018 4.018 6 C 0.091 3.909 7 N -0.388 5.388 8 C -0.104 4.104 9 C -0.016 4.016 10 N -0.163 5.163 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.175 4.175 14 N -0.518 5.518 15 Si 0.750 3.250 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.112 4.112 20 C -0.149 4.149 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.146 0.854 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.243 2.873 -0.965 9.727 hybrid contribution 0.381 -1.562 0.896 1.841 sum -8.863 1.310 -0.070 8.959 Atomic orbital electron populations 1.20746 0.91847 1.02233 1.01795 1.19907 0.95543 0.93435 1.00618 1.20833 0.93932 0.97092 1.03355 1.21202 0.93421 0.97798 0.97483 1.18171 0.89468 0.93367 1.00757 1.21076 0.90844 0.87509 0.91456 1.74366 1.01120 1.27567 1.35782 1.22904 0.93551 0.95596 0.98381 1.22458 0.83902 0.95404 0.99798 1.43864 1.03826 1.18666 1.49946 1.19625 0.98485 0.90078 1.35032 0.87735 1.25327 0.95546 0.98948 0.97729 1.69899 1.03516 1.32794 1.45640 0.85957 0.78723 0.81373 0.78904 1.20115 1.20758 1.19363 1.21835 0.93785 0.99218 0.96385 1.20907 0.94051 0.97142 1.02847 0.91630 0.91912 0.91981 0.86503 0.85444 0.92611 0.92908 0.92907 0.89375 0.92053 0.83536 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.84 16 2 C -0.09 -1.41 5.89 -104.54 -0.62 -2.02 16 3 C -0.13 -2.09 9.68 -39.64 -0.38 -2.47 16 4 C -0.08 -1.48 9.64 -39.21 -0.38 -1.86 16 5 C -0.02 -0.34 5.74 -104.95 -0.60 -0.94 16 6 C 0.36 8.90 7.30 -155.65 -1.14 7.76 16 7 N -0.65 -15.85 11.33 -57.94 -0.66 -16.51 16 8 C 0.03 0.61 8.04 -3.21 -0.03 0.58 16 9 C 0.11 2.73 5.90 -3.03 -0.02 2.71 16 10 N -0.46 -11.96 3.16 -112.16 -0.35 -12.32 16 11 C -0.30 -7.85 8.26 -15.04 -0.12 -7.98 16 12 H 0.11 2.57 5.56 -52.49 -0.29 2.28 16 13 C 0.03 0.74 5.49 -17.46 -0.10 0.65 16 14 N -0.88 -23.51 10.58 55.50 0.59 -22.92 16 15 Si 0.92 19.69 29.56 -169.99 -5.02 14.67 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 C -0.09 -1.83 8.16 -39.21 -0.32 -2.15 16 20 C -0.13 -2.15 9.68 -39.64 -0.38 -2.54 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 23 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 25 H 0.13 2.35 7.97 -52.49 -0.42 1.93 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.09 2.33 6.81 -51.93 -0.35 1.98 16 30 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 31 H 0.15 3.08 5.65 -52.48 -0.30 2.78 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 268.89 15.07 4.05 4.05 Total: -1.00 -28.58 268.89 -8.99 -37.57 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.87 Total: 4.56 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -3.72 Total: -9.11 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.42 Total: -51.75 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.58 -8.99 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260093823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.846 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds